mRNA_Ecto-sp13_S_contig10192.213.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10192.213.1
Unique NamemRNA_Ecto-sp13_S_contig10192.213.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10192.213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10192contigEcto-sp13_S_contig10192:610..997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size376
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_001640.2
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462513.6409142-UTR-Ecto-sp13_S_contig10192:609..6541681462513.6409142-UTR-Ecto-sp13_S_contig10192:609..654Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10192 610..654 +
1681462513.6695611-UTR-Ecto-sp13_S_contig10192:933..9971681462513.6695611-UTR-Ecto-sp13_S_contig10192:933..997Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10192 934..997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462513.6528003-CDS-Ecto-sp13_S_contig10192:654..6621681462513.6528003-CDS-Ecto-sp13_S_contig10192:654..662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10192 655..662 +
1681462513.6613858-CDS-Ecto-sp13_S_contig10192:674..9331681462513.6613858-CDS-Ecto-sp13_S_contig10192:674..933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10192 675..933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10192.213.1prot_Ecto-sp13_S_contig10192.213.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10192 655..933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10192.213.1

>prot_Ecto-sp13_S_contig10192.213.1 ID=prot_Ecto-sp13_S_contig10192.213.1|Name=mRNA_Ecto-sp13_S_contig10192.213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MPCSLSLSLSLSNVCCACVCWVLVWCLVLFLVYRSFDVGAVDGSKTNYSR
LIKRRFGSLFPRSVFLCWFCGCRVRSGFCAGKPMGAVH*
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mRNA from alignment at Ecto-sp13_S_contig10192:610..997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10192.213.1 ID=mRNA_Ecto-sp13_S_contig10192.213.1|Name=mRNA_Ecto-sp13_S_contig10192.213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=388bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10192:610..997+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTACATTTGTTGCGTTTCGTGCGGCACCCTGGTTATGCTCTTCGTATGCC
GTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAATGTCT
GTTGTGCGTGCGTGTGTTGGGTGTTGGTGTGGTGTTTGGTGCTCTTCTTA
GTTTATCGTTCTTTCGATGTCGGAGCTGTTGATGGGAGCAAAACGAATTA
CTCAAGACTCATCAAGCGACGATTTGGTTCTTTGTTTCCTCGCTCTGTTT
TTCTCTGCTGGTTTTGCGGTTGTCGTGTTCGGTCGGGCTTTTGTGCGGGG
AAGCCAATGGGTGCGGTACACTAGGTGATGAACGACAGAGTGTGTGATCC
GGCTCAAGTATTGTACCGTGGTAGTTGTTTGAGGGAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10192:610..997+

>mRNA_Ecto-sp13_S_contig10192.213.1 ID=mRNA_Ecto-sp13_S_contig10192.213.1|Name=mRNA_Ecto-sp13_S_contig10192.213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10192:610..997+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTGCTCTCTCTCTCTCTCTCTCTCTCTCTCCAATGTCTGTTGTGC
GTGCGTGTGTTGGGTGTTGGTGTGGTGTTTGGTGCTCTTCTTAGTTTATC
GTTCTTTCGATGTCGGAGCTGTTGATGGGAGCAAAACGAATTACTCAAGA
CTCATCAAGCGACGATTTGGTTCTTTGTTTCCTCGCTCTGTTTTTCTCTG
CTGGTTTTGCGGTTGTCGTGTTCGGTCGGGCTTTTGTGCGGGGAAGCCAA
TGGGTGCGGTACACTAG
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