mRNA_Ecto-sp13_S_contig12557.2118.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12557.2118.1
Unique NamemRNA_Ecto-sp13_S_contig12557.2118.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12557.2118.1 vs. uniprot
Match: A0A6H5K9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X3_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.290e-28
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    7 VRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKV 162
            VRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKV
Sbjct:  140 VRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKV 191
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12557.2118.1 vs. uniprot
Match: D8LC82_ECTSI (Haloacid dehalogenase (HAD) superfamily protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC82_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.890e-27
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    7 VRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKV 162
            VRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKV
Sbjct:  213 VRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKV 264
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12557.2118.1 vs. uniprot
Match: A0A835Z207_9STRA (Mitochondrial PGP phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z207_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.040e-16
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   19 ELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKV 162
            +LC +GDRLLTDVVFGNLHGMLTVHT+PLTL+GDN+ A V RY+E ++
Sbjct:  147 DLCVIGDRLLTDVVFGNLHGMLTVHTKPLTLQGDNKVALVARYIESRI 194
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12557.2118.1 vs. uniprot
Match: A0A7S1ISK9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ISK9_9EUGL)

HSP 1 Score: 74.7 bits (182), Expect = 8.040e-15
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    7 VRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKV 162
            VR  EL  VGDRLLTDVVFGNL+GMLTVHT+PLTL+GDN+ A V R LE  V
Sbjct:  172 VRPTELVMVGDRLLTDVVFGNLYGMLTVHTRPLTLEGDNKVARVIRPLETAV 223
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12557.2118.1 vs. uniprot
Match: A0A0L0G5Q0_9EUKA (HAD superfamily (Subfamily IIIA) phosphatase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G5Q0_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 1.700e-14
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 RQVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLE 153
            + V+L+EL FVGDRLLTDVVFGNL GMLT+HTQP +LK DNR A   R +E
Sbjct:  135 KDVKLEELAFVGDRLLTDVVFGNLGGMLTIHTQPFSLKRDNRVAKSVRTME 185
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12557.2118.1 vs. uniprot
Match: A0A4D9CSW1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSW1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.160e-12
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   16 DELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVSRTI 174
            ++LC +GDRLLTDV++GN  GMLTVHTQ LT +GDN+ AA+ R LE   SR +
Sbjct:  101 EDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLENGFSRIL 153
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12557.2118.1 vs. uniprot
Match: W7U306_9STRA (Haloacid dehalogenase superfamily protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U306_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.930e-12
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   16 DELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVSRTI 174
            ++LC +GDRLLTDV++GN  GMLTVHTQ LT +GDN+ AA+ R LE   SR +
Sbjct:  220 EDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLENGFSRIL 272
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12557.2118.1 vs. uniprot
Match: R1BPW3_EMIHU (Uncharacterized protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BPW3_EMIHU)

HSP 1 Score: 64.7 bits (156), Expect = 1.260e-11
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   22 LCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLE 153
            L  VGDR LTDVVFGN+HGMLTVHTQ LT +GDNR A   R  E
Sbjct:   99 LLMVGDRYLTDVVFGNMHGMLTVHTQQLTTEGDNRVAQAMRRAE 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12557.2118.1 vs. uniprot
Match: A0A448ZEQ0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEQ0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.060e-11
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   22 LCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNR----PAAVFRYLERK 159
            LC VGDRLLTDVVFGNLH MLT+HT PL    +NR    P+ + RY+E K
Sbjct:  140 LCMVGDRLLTDVVFGNLHSMLTIHTLPLCKGAENRQDNTPSKIIRYIENK 189
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12557.2118.1 vs. uniprot
Match: R1CM78_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CM78_EMIHU)

HSP 1 Score: 64.7 bits (156), Expect = 3.340e-11
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   22 LCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLE 153
            L  VGDR LTDVVFGN+HGMLTVHTQ LT +GDNR A   R  E
Sbjct:  139 LLMVGDRYLTDVVFGNMHGMLTVHTQQLTTEGDNRVAQAMRRAE 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12557.2118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9X3_9PHAE4.290e-28100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC82_ECTSI1.890e-27100.00Haloacid dehalogenase (HAD) superfamily protein n=... [more]
A0A835Z207_9STRA1.040e-1672.92Mitochondrial PGP phosphatase-domain-containing pr... [more]
A0A7S1ISK9_9EUGL8.040e-1573.08Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0L0G5Q0_9EUKA1.700e-1468.63HAD superfamily (Subfamily IIIA) phosphatase n=1 T... [more]
A0A4D9CSW1_9STRA1.160e-1260.38Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U306_9STRA4.930e-1260.38Haloacid dehalogenase superfamily protein n=1 Tax=... [more]
R1BPW3_EMIHU1.260e-1170.45Uncharacterized protein (Fragment) n=2 Tax=Emilian... [more]
A0A448ZEQ0_9STRA3.060e-1162.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
R1CM78_EMIHU3.340e-1170.45Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12557contigEcto-sp13_S_contig12557:4781..4954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score110.5
Seed ortholog evalue2.6e-22
Seed eggNOG ortholog2880.D8LC82
Preferred nameGEP4
Model size174
KEGG rclassRC00017
KEGG koko:K01094
KEGG ReactionR02029
KEGG Pathwayko00564,ko01100,map00564,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008962,GO:0009058,GO:0009987,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0031974,GO:0032048,GO:0032049,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044262,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0046838,GO:0061024,GO:0070013,GO:0071704,GO:0071840,GO:0090407,GO:1901576
Exons1
EggNOG free text desc.phosphatase
EggNOG OGsCOG1011@1,KOG2961@2759
EC3.1.3.27
Cds size174
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462669.6154299-CDS-Ecto-sp13_S_contig12557:4780..49541681462669.6154299-CDS-Ecto-sp13_S_contig12557:4780..4954Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12557 4781..4954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12557.2118.1prot_Ecto-sp13_S_contig12557.2118.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12557 4781..4954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12557.2118.1

>prot_Ecto-sp13_S_contig12557.2118.1 ID=prot_Ecto-sp13_S_contig12557.2118.1|Name=mRNA_Ecto-sp13_S_contig12557.2118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
RQVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYL
ERKVSRTI
back to top

mRNA from alignment at Ecto-sp13_S_contig12557:4781..4954-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12557.2118.1 ID=mRNA_Ecto-sp13_S_contig12557.2118.1|Name=mRNA_Ecto-sp13_S_contig12557.2118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12557:4781..4954- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCAGGTGCGACTGGACGAGCTGTGCTTCGTAGGCGACCGACTCCTCAC
GGACGTGGTTTTCGGCAACCTGCACGGTATGCTCACGGTGCACACCCAGC
CGCTGACGCTCAAGGGGGACAACCGGCCAGCGGCTGTCTTCCGCTACTTG
GAGCGGAAGGTAAGCCGTACAATC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12557:4781..4954-

>mRNA_Ecto-sp13_S_contig12557.2118.1 ID=mRNA_Ecto-sp13_S_contig12557.2118.1|Name=mRNA_Ecto-sp13_S_contig12557.2118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12557:4781..4954- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCAGGTGCGACTGGACGAGCTGTGCTTCGTAGGCGACCGACTCCTCAC
GGACGTGGTTTTCGGCAACCTGCACGGTATGCTCACGGTGCACACCCAGC
CGCTGACGCTCAAGGGGGACAACCGGCCAGCGGCTGTCTTCCGCTACTTG
GAGCGGAAGGTAAGCCGTACAATC
back to top