mRNA_Ecto-sp13_S_contig9539.21145.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9539.21145.1
Unique NamemRNA_Ecto-sp13_S_contig9539.21145.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9539.21145.1 vs. uniprot
Match: D8LN97_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN97_ECTSI)

HSP 1 Score: 461 bits (1186), Expect = 2.480e-155
Identity = 312/348 (89.66%), Postives = 319/348 (91.67%), Query Frame = 1 
Query:    1 MVACRHQGCAERASFGVEGGLVRAAKFCSGHAENGMVDFCKKTGGHPGCCMELPSCGMEGSKNCSRHGNPRTTVNFDVKRCGHPVCTKWPSYGVEGCKMAGLCPQLTKDRMAFVVEGRGQSPRQHADDNETLPFSVGGSKTAEFCSHE--ANTANAGQLRRKRSACGVEGTQTIKLGASNSKAGTASVVASKRRKLCNHPGCNTKPLFGEAGTEETKFCGHHSKPGMVNVTTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRRKRFKLTTASLAAKQTNKKRLCSE-NKEGKETKNARVDED 1035
            MVACRHQGCAERAS GVEGG VRAA+FCSGHAENGMVDFCKKTGG PGCCME PSCGMEGSKNCSRHGNP   VN DVKRCGHP CTKWPSYGVEGCKMAGLCPQLTKDRM +VVEGRGQSPRQHADDNETLPF VGG KTAEFCSH   ANTAN GQL RKR AC VEG  TIKLGASNSKAG A VVASKRRKLCNHPGCNTKPLFGE GT+ETKFC HHSKPGMVN+TTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF+RKRFKLTTASLAAKQ NKKRL  E NKEGK+T+NARVDED
Sbjct:    1 MVACRHQGCAERASSGVEGGRVRAAEFCSGHAENGMVDFCKKTGGRPGCCMEHPSCGMEGSKNCSRHGNPGMMVNLDVKRCGHPGCTKWPSYGVEGCKMAGLCPQLTKDRMTYVVEGRGQSPRQHADDNETLPFGVGGGKTAEFCSHAQAANTANVGQLGRKRPACVVEGAPTIKLGASNSKAGMADVVASKRRKLCNHPGCNTKPLFGEEGTDETKFCAHHSKPGMVNLTTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKRKRFKLTTASLAAKQANKKRLHYEKNKEGKKTENARVDED 348
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9539.21145.1 vs. uniprot
Match: A0A6H5K5F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F0_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 6.460e-77
Identity = 232/348 (66.67%), Postives = 241/348 (69.25%), Query Frame = 1 
Query:    1 MVACRHQGCAERASFGVEGGLVRAAKFCSGHAENGMVDFCKKTGGHPGCCMELPSCGMEGSKNCSRHGNPRTTVNFDVKRCGHPVCTKWPSYGVEGCKMAGLCPQLTKDRMAFVVEGRGQSPRQHADDNETLPFSVGGSKTAEFCSHEANTANAGQLRRKRSACGVEGTQTIKLGASNSKAGTASV--VASKRRKLCNHPGCNTKPLFGEAGTEETKFCGHHSKPGMVNVTTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRRKRFKLTTASLAAKQTNKKRLCSENK-EGKETKNARVDED 1035
            MVACRHQGCAERASFGVEGG VRAA+FCSGHAENGMVDFCKKTGGHPGCCME PSCGMEG   CSRHGNP   VNFDVKRCGHPV            KMAGLCPQL+KD M +VVEGRGQSPRQHADDNETLPF                                                      VASKR+KLCNHPGC                        MVN+TTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +RKRFKLT ASLAAKQTNKKRL SE K EGK T++A V+ED
Sbjct:    1 MVACRHQGCAERASFGVEGGRVRAAEFCSGHAENGMVDFCKKTGGHPGCCMEHPSCGMEGCTYCSRHGNPGMLVNFDVKRCGHPVXXXXXXXXXXXXKMAGLCPQLSKDGMTYVVEGRGQSPRQHADDNETLPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASKRKKLCNHPGCXXXXXXXXXXXXXXXXXXXXXXXXMVNLTTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKRFKLTVASLAAKQTNKKRLHSEKKKEGKGTESATVNED 348
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9539.21145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN97_ECTSI2.480e-15589.66EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K5F0_9PHAE6.460e-7766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9539contigEcto-sp13_S_contig9539:4243..6278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1035
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-04_004650.1
Cds size1035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464219.2437675-CDS-Ecto-sp13_S_contig9539:4242..52141681464219.2437675-CDS-Ecto-sp13_S_contig9539:4242..5214Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9539 4243..5214 +
1681464219.2538936-CDS-Ecto-sp13_S_contig9539:6215..62781681464219.2538936-CDS-Ecto-sp13_S_contig9539:6215..6278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9539 6216..6278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9539.21145.1prot_Ecto-sp13_S_contig9539.21145.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9539 4243..6278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9539.21145.1

>prot_Ecto-sp13_S_contig9539.21145.1 ID=prot_Ecto-sp13_S_contig9539.21145.1|Name=mRNA_Ecto-sp13_S_contig9539.21145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=345bp
MVACRHQGCAERASFGVEGGLVRAAKFCSGHAENGMVDFCKKTGGHPGCC
MELPSCGMEGSKNCSRHGNPRTTVNFDVKRCGHPVCTKWPSYGVEGCKMA
GLCPQLTKDRMAFVVEGRGQSPRQHADDNETLPFSVGGSKTAEFCSHEAN
TANAGQLRRKRSACGVEGTQTIKLGASNSKAGTASVVASKRRKLCNHPGC
NTKPLFGEAGTEETKFCGHHSKPGMVNVTTKRCGHSGCGATPSYGVEGCR
VREFCPRHAKPGMVDVVAKRCGNAGCATMPSHGVDGSKVAEFCPRHAKDG
MVDVFRRKRFKLTTASLAAKQTNKKRLCSENKEGKETKNARVDED
back to top

mRNA from alignment at Ecto-sp13_S_contig9539:4243..6278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9539.21145.1 ID=mRNA_Ecto-sp13_S_contig9539.21145.1|Name=mRNA_Ecto-sp13_S_contig9539.21145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2036bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9539:4243..6278+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGCATGTCGGCATCAAGGATGCGCCGAGCGTGCGTCGTTCGGCGT
TGAAGGGGGCCTTGTTAGGGCGGCAAAATTCTGCTCTGGGCACGCGGAAA
ACGGGATGGTAGACTTCTGCAAGAAGACCGGCGGCCATCCAGGCTGCTGC
ATGGAACTTCCGTCGTGCGGCATGGAGGGTTCGAAGAACTGCTCTCGTCA
CGGCAATCCGAGGACGACGGTGAACTTCGATGTGAAGAGGTGCGGCCATC
CGGTATGCACCAAGTGGCCGTCGTACGGCGTAGAGGGTTGCAAGATGGCG
GGTCTCTGCCCTCAGCTTACGAAGGACAGAATGGCCTTTGTAGTGGAGGG
GAGAGGGCAGAGCCCGCGGCAGCACGCAGACGACAACGAAACCCTGCCTT
TCAGCGTCGGCGGTAGCAAGACGGCGGAGTTCTGCTCACATGAGGCGAAT
ACGGCTAACGCCGGTCAGCTACGCCGAAAGCGCTCAGCTTGTGGGGTGGA
AGGCACGCAAACCATCAAGCTCGGTGCATCCAACTCCAAGGCTGGGACGG
CGAGCGTCGTAGCCAGCAAGAGGAGGAAGCTGTGCAACCATCCCGGGTGC
AACACGAAACCTCTGTTCGGGGAAGCGGGGACCGAGGAGACCAAGTTCTG
CGGGCATCACTCGAAGCCGGGTATGGTGAACGTGACCACCAAGAGGTGCG
GCCACAGCGGCTGCGGCGCGACGCCGTCCTACGGCGTGGAAGGCTGCAGG
GTTAGGGAGTTCTGTCCGCGTCATGCGAAGCCAGGCATGGTGGATGTCGT
CGCCAAGAGGTGCGGCAACGCCGGTTGCGCGACGATGCCGTCGCACGGAG
TCGATGGCAGCAAGGTGGCGGAGTTCTGCCCGCGGCACGCGAAGGACGGA
ATGGTAGATGTCTTCAGGAGGAAAAGGTTCAAGCTCACTACGGCGAGCTT
GGCAGCCAAGCAAACGAACAAGGTACTAACCCTCAGCCGTGTGACCGCTC
TCCCTCATATACTTGCTGCTGCTGTTCTTGTGTATATTTACCAGTCGGTT
GTCATCTATACAGGACCTTCTGTACCGGTCAAAAAAAAAATCACATCCCA
CTTGGCGTGGATGTAGTTGTTTTCCGCTGTACAGCAGTCGTGAAGAAGGC
AACAAAGGTAAAACTCCTCGAGACATTCAAGAGTGTGTTTCCCAAGAGAT
GCCGTGGAATGTACAAGCCGGCGGGATATACACCCTACTGTGCGGGCTTC
CGGGCTCTGTACGTACACCACTTTGGTCGCACAGCGCACGGCTGGAGACT
CACTCGTAGATTTACACGCCGGTAAATTGAATTTTGTTCGTGCGTAGCGG
TTCTCGCCCCCCTTCATAAACTTTCGTCGATTCATTGGTCAGACGGTCTG
AAGGTTCCCCTGCACTCTAGCATCACCACGGCCTTTGGGCGGAAGCGCGG
TGTAAAGCTTGTGGTTCGAACGAAGGTGTCACCTAACGGGCACCGACATT
GACGATGCGGTAGGTATCAACGGGTGCCTTGCCGACCACATGGCGTTTGT
GGTGTTTGAAGAGTTGTGCAACGTTCAACAGCTTGGCGCAGCTTGAGAAG
CCACGTTGCGATCTGTGTTTCCGTCCGTTCATGGCGTGAACGCCCCGTGC
CCGACGCGGCGCGCGTGTCGACGTGCAGAACAGCGCCACCGACCCTATGG
TAGTGAACTGTCGTTCTTTTGAGTCTCGGACACTCACTCACCAACCCTGG
AGACCTTCCTTTCCTTTGAATTAACTCCACGTGCGACGCCCCTAGCTAAC
ACGGGGACTAATGCTGCTGTGGGCCATGGTGTATTTTCACTTGGCGATTG
AGGATACGGACTCAAACGCGTCTGGCAGCAACACCTGGGGCCTCAATTTT
CGCTGGATTTTTTTCAGCCGCTCCTCTCACACGCTTGTTTTGGCCCCACC
GCTCCGCATCGTTCGCTTTCTAGAAGCGTTTATGTTCTGAGAACAAGGAG
GGCAAGGAGACAAAGAACGCTAGGGTGGACGAGGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9539:4243..6278+

>mRNA_Ecto-sp13_S_contig9539.21145.1 ID=mRNA_Ecto-sp13_S_contig9539.21145.1|Name=mRNA_Ecto-sp13_S_contig9539.21145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1035bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9539:4243..6278+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGCATGTCGGCATCAAGGATGCGCCGAGCGTGCGTCGTTCGGCGT
TGAAGGGGGCCTTGTTAGGGCGGCAAAATTCTGCTCTGGGCACGCGGAAA
ACGGGATGGTAGACTTCTGCAAGAAGACCGGCGGCCATCCAGGCTGCTGC
ATGGAACTTCCGTCGTGCGGCATGGAGGGTTCGAAGAACTGCTCTCGTCA
CGGCAATCCGAGGACGACGGTGAACTTCGATGTGAAGAGGTGCGGCCATC
CGGTATGCACCAAGTGGCCGTCGTACGGCGTAGAGGGTTGCAAGATGGCG
GGTCTCTGCCCTCAGCTTACGAAGGACAGAATGGCCTTTGTAGTGGAGGG
GAGAGGGCAGAGCCCGCGGCAGCACGCAGACGACAACGAAACCCTGCCTT
TCAGCGTCGGCGGTAGCAAGACGGCGGAGTTCTGCTCACATGAGGCGAAT
ACGGCTAACGCCGGTCAGCTACGCCGAAAGCGCTCAGCTTGTGGGGTGGA
AGGCACGCAAACCATCAAGCTCGGTGCATCCAACTCCAAGGCTGGGACGG
CGAGCGTCGTAGCCAGCAAGAGGAGGAAGCTGTGCAACCATCCCGGGTGC
AACACGAAACCTCTGTTCGGGGAAGCGGGGACCGAGGAGACCAAGTTCTG
CGGGCATCACTCGAAGCCGGGTATGGTGAACGTGACCACCAAGAGGTGCG
GCCACAGCGGCTGCGGCGCGACGCCGTCCTACGGCGTGGAAGGCTGCAGG
GTTAGGGAGTTCTGTCCGCGTCATGCGAAGCCAGGCATGGTGGATGTCGT
CGCCAAGAGGTGCGGCAACGCCGGTTGCGCGACGATGCCGTCGCACGGAG
TCGATGGCAGCAAGGTGGCGGAGTTCTGCCCGCGGCACGCGAAGGACGGA
ATGGTAGATGTCTTCAGGAGGAAAAGGTTCAAGCTCACTACGGCGAGCTT
GGCAGCCAAGCAAACGAACAAGAAGCGTTTATGTTCTGAGAACAAGGAGG
GCAAGGAGACAAAGAACGCTAGGGTGGACGAGGAC
back to top