mRNA_Ecto-sp13_S_contig12549.2112.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12549.2112.1
Unique NamemRNA_Ecto-sp13_S_contig12549.2112.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12549.2112.1 vs. uniprot
Match: D7G4N3_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4N3_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 7.650e-47
Identity = 92/107 (85.98%), Postives = 96/107 (89.72%), Query Frame = -3 
Query:    2 MSSQQICQKRIRGSAMAGSARIMGALACLVSISAAASTAAQQAFLSPASSWFTARRPERHSAMMTRKGTSMMSAVASETAVADAASGVETRMWKWKGYNIRYKVAAE 322
            M S Q  Q RIRGSAMAGS RI+GALACLVSISAAAST  QQAFL+PASSWFTA RP+RHSAMM RKGTSMMSAVASETAVADAA GVETRMWKWKGY+IRYKVAAE
Sbjct:    1 MFSHQERQNRIRGSAMAGSTRIVGALACLVSISAAASTTGQQAFLAPASSWFTAGRPDRHSAMMARKGTSMMSAVASETAVADAAGGVETRMWKWKGYDIRYKVAAE 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12549.2112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4N3_ECTSI7.650e-4785.98AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12549contigEcto-sp13_S_contig12549:252..818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size567
Hectar predicted targeting categoryother localisation
Exons1
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462669.227733-UTR-Ecto-sp13_S_contig12549:251..2741681462669.227733-UTR-Ecto-sp13_S_contig12549:251..274Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12549 252..274 +
1681462669.2468688-UTR-Ecto-sp13_S_contig12549:751..8181681462669.2468688-UTR-Ecto-sp13_S_contig12549:751..818Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12549 752..818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462669.237801-CDS-Ecto-sp13_S_contig12549:274..7511681462669.237801-CDS-Ecto-sp13_S_contig12549:274..751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12549 275..751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12549.2112.1prot_Ecto-sp13_S_contig12549.2112.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12549 275..751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12549.2112.1

>prot_Ecto-sp13_S_contig12549.2112.1 ID=prot_Ecto-sp13_S_contig12549.2112.1|Name=mRNA_Ecto-sp13_S_contig12549.2112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MLYPFHFHMRVSTPLAASATAVSDATADIIEVPFLVIMAECRSGRRAVNQ
DDAGERNACCAAVDAAAEMDTRHASAPIILADPAIALPRILFWQICCEDI
NRMRWVSGALQAVHTAVRHTQQRAELMMPVSLCCSFRARGVWPTHQATHV
RRSRTRPC*
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mRNA from alignment at Ecto-sp13_S_contig12549:252..818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12549.2112.1 ID=mRNA_Ecto-sp13_S_contig12549.2112.1|Name=mRNA_Ecto-sp13_S_contig12549.2112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12549:252..818+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCGGCTGCGACCTTGTATCGAATGTTGTACCCTTTCCATTTCCACATG
CGAGTCTCCACGCCGCTCGCCGCGTCTGCTACGGCTGTCTCCGACGCCAC
GGCCGACATCATAGAAGTACCCTTCCTGGTCATCATGGCCGAATGCCGTT
CAGGTCGTCGAGCGGTGAACCAAGACGATGCGGGTGAAAGGAACGCTTGC
TGCGCTGCTGTCGATGCTGCTGCCGAGATGGACACCAGGCATGCCAGCGC
ACCCATAATCCTGGCCGACCCTGCCATCGCGCTCCCGCGTATTCTCTTTT
GGCAAATTTGTTGTGAAGACATCAATCGGATGAGGTGGGTGTCAGGTGCT
TTGCAAGCAGTGCACACAGCAGTACGTCACACGCAACAGAGGGCAGAGCT
GATGATGCCAGTATCGCTCTGTTGTTCTTTTCGTGCACGTGGAGTTTGGC
CGACACACCAGGCCACCCACGTCAGGCGCTCAAGAACCAGGCCTTGCTAG
GCTTTCTGGTCGTGTGCTGGCTGTGGTAAGAGCTGTGAGGCCTGTGGCGC
GTGTTGCCTGTGACTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12549:252..818+

>mRNA_Ecto-sp13_S_contig12549.2112.1 ID=mRNA_Ecto-sp13_S_contig12549.2112.1|Name=mRNA_Ecto-sp13_S_contig12549.2112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12549:252..818+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGTACCCTTTCCATTTCCACATGCGAGTCTCCACGCCGCTCGCCGC
GTCTGCTACGGCTGTCTCCGACGCCACGGCCGACATCATAGAAGTACCCT
TCCTGGTCATCATGGCCGAATGCCGTTCAGGTCGTCGAGCGGTGAACCAA
GACGATGCGGGTGAAAGGAACGCTTGCTGCGCTGCTGTCGATGCTGCTGC
CGAGATGGACACCAGGCATGCCAGCGCACCCATAATCCTGGCCGACCCTG
CCATCGCGCTCCCGCGTATTCTCTTTTGGCAAATTTGTTGTGAAGACATC
AATCGGATGAGGTGGGTGTCAGGTGCTTTGCAAGCAGTGCACACAGCAGT
ACGTCACACGCAACAGAGGGCAGAGCTGATGATGCCAGTATCGCTCTGTT
GTTCTTTTCGTGCACGTGGAGTTTGGCCGACACACCAGGCCACCCACGTC
AGGCGCTCAAGAACCAGGCCTTGCTAG
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