prot_Ecto-sp13_S_contig9490.21110.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9490.21110.1
Unique Nameprot_Ecto-sp13_S_contig9490.21110.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length107
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9490.21110.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 3.840e-56
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 
Query:    1 SSGALSCIVSTRGRGPELAVFTPDGVYLSSRVRYSWSCAARVPLSPLHKGGGSDRILLSWSCRGPLVVADQAISVWSNNPAVPSANANTFSSDESD 96
            SSGALSCIVSTRGRGPELAVFTPDGVYLSSRVRYSWSCAARVPLSPLHKGGGSDRILLSWSCRGPLVVADQAISVWSNNPAVPSANANTFSSDESD
Sbjct:   62 SSGALSCIVSTRGRGPELAVFTPDGVYLSSRVRYSWSCAARVPLSPLHKGGGSDRILLSWSCRGPLVVADQAISVWSNNPAVPSANANTFSSDESD 157
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BLAST of mRNA_Ecto-sp13_S_contig9490.21110.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.080e-51
Identity = 96/118 (81.36%), Postives = 96/118 (81.36%), Query Frame = 0 
Query:    1 SSGALSCIVSTR----------------------GRGPELAVFTPDGVYLSSRVRYSWSCAARVPLSPLHKGGGSDRILLSWSCRGPLVVADQAISVWSNNPAVPSANANTFSSDESD 96
            SSGALSCIVSTR                      GRGPELAVFTPDGVYLSSRVRYSWSCAARVPLSPLHKGGGSDRILLSWSCRGPLVVADQAISVWSNNPAVPSANANTFSSDESD
Sbjct:   62 SSGALSCIVSTRACSCLCFVAIVRLPPPSPSNPAGRGPELAVFTPDGVYLSSRVRYSWSCAARVPLSPLHKGGGSDRILLSWSCRGPLVVADQAISVWSNNPAVPSANANTFSSDESD 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9490.21110.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G824_ECTSI3.840e-56100.00PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K928_9PHAE1.080e-5181.36PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9490contigEcto-sp13_S_contig9490:4770..6181 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9490.21110.1mRNA_Ecto-sp13_S_contig9490.21110.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9490 4770..6181 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9490.21110.1 ID=prot_Ecto-sp13_S_contig9490.21110.1|Name=mRNA_Ecto-sp13_S_contig9490.21110.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
SSGALSCIVSTRGRGPELAVFTPDGVYLSSRVRYSWSCAARVPLSPLHKG
GGSDRILLSWSCRGPLVVADQAISVWSNNPAVPSANANTFSSDESDSSGG
GGSGSSD
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