mRNA_Ecto-sp13_S_contig12541.2106.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12541.2106.1
Unique NamemRNA_Ecto-sp13_S_contig12541.2106.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12541.2106.1 vs. uniprot
Match: D8LCW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW9_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 2.950e-70
Identity = 139/170 (81.76%), Postives = 141/170 (82.94%), Query Frame = 1 
Query:    1 PMAFEFSSLMYLTGLKIYYEVYLGNVAPPEELPSLFDASRSG----------RIGRMPSKLSLDAIXXXXXXXXXXXXXXXSSFRDASSNRGVHPQGQPGVVGIASLHLPRPLVMGRTRSRPHSPDAVSGGGTEVGSGAIPRHEQRAHEAKEAQASAVAADDGIHVPPSE 480
            PMAFEFSSLMYLTGLKIYYEV LGNVAPPEELPSL +A+RSG          RIGRMPSKLSLDAI XXXXXXXXXXXXXX S RDASSN  V PQGQP V G  SL LPRP VMGRTRSRPHSPDAVSG GTEVG GAIPRHEQRA EAKEAQASAVAADD IHV PSE
Sbjct:   69 PMAFEFSSLMYLTGLKIYYEVCLGNVAPPEELPSLLEANRSGPXXXXXXXXGRIGRMPSKLSLDAIDXXXXXXXXXXXXXXXSLRDASSNGVVCPQGQPSVSGTTSLDLPRPPVMGRTRSRPHSPDAVSGAGTEVGGGAIPRHEQRADEAKEAQASAVAADDSIHVLPSE 238
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12541.2106.1 vs. uniprot
Match: A0A6H5JYM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYM3_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.300e-8
Identity = 33/56 (58.93%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:  139 MPSKLSLDAIXXXXXXXXXXXXXXXSSFRDASSNRGVHPQGQPGVVGIASLHLPRP 306
            MPSKLSLDAI               SSFRDAS+N  V PQGQP VVG ASL LP P
Sbjct:    1 MPSKLSLDAIDDASKSGRRRTMLSKSSFRDASNNSVVCPQGQPSVVGTASLDLPAP 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12541.2106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCW9_ECTSI2.950e-7081.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYM3_9PHAE1.300e-858.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12541contigEcto-sp13_S_contig12541:51..1025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size483
Hectar predicted targeting categoryother localisation
Exons2
Cds size480
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462668.7721055-UTR-Ecto-sp13_S_contig12541:50..531681462668.7721055-UTR-Ecto-sp13_S_contig12541:50..53Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12541 51..53 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462668.7850008-CDS-Ecto-sp13_S_contig12541:53..1101681462668.7850008-CDS-Ecto-sp13_S_contig12541:53..110Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12541 54..110 +
1681462668.792554-CDS-Ecto-sp13_S_contig12541:602..10251681462668.792554-CDS-Ecto-sp13_S_contig12541:602..1025Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12541 603..1025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12541.2106.1prot_Ecto-sp13_S_contig12541.2106.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12541 54..1025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12541.2106.1

>prot_Ecto-sp13_S_contig12541.2106.1 ID=prot_Ecto-sp13_S_contig12541.2106.1|Name=mRNA_Ecto-sp13_S_contig12541.2106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
MAFEFSSLMYLTGLKIYYEVYLGNVAPPEELPSLFDASRSGRIGRMPSKL
SLDAIDDGSKSGRRSRMLSKSSFRDASSNRGVHPQGQPGVVGIASLHLPR
PLVMGRTRSRPHSPDAVSGGGTEVGSGAIPRHEQRAHEAKEAQASAVAAD
DGIHVPPSE*
back to top

mRNA from alignment at Ecto-sp13_S_contig12541:51..1025+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12541.2106.1 ID=mRNA_Ecto-sp13_S_contig12541.2106.1|Name=mRNA_Ecto-sp13_S_contig12541.2106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12541:51..1025+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGATGGCCTTCGAATTCTCCAGCTTGATGTATCTGACGGGCCTCAAGAT
CTACTACGAGGTGAGGCTTTACGCCACGGTAGAAGGCAAGAGTCCCCAAC
AAGAGCCCTTCCCAAGAATCCGACTACTTGAGACATGGCACGGGGGGGCC
GAGGGACATCGGAGGGACACTGGGTTTGAAACGCTCTCCCTTGCGGTGTT
TAATGTCTGTTGGTTTGTCATGCACACCTACATCTCTTTTCGAACGGAGC
GAACGCAATCCTGCTGCGTTCTTGGGCTATTCACGAGGAACGGTTAGGTC
GTCAAACTTGACACCTCGAGGTGGCAGTACGCACCGCATCCAGGCAGTTC
AAGGGGTGACACCTTGTCTCCCTCCCGTGGGCCAACGCCCCCAAAAACCC
GAAGCATGGCCAAATTCCACACACCATCTCGTCTAACCCCTTCTATTGCC
CGAAAAAACAACGCCACAAGGCATCGTGTCTTGTTTCCTCTTTCCGGCCC
GAGACCATATGGTTCATCATGAACGCTCTCCCTTTGACTCCCGGCTTCCA
AGGTTTACCTGGGAAACGTGGCCCCGCCGGAAGAGCTGCCGTCACTGTTT
GACGCCAGCCGTAGCGGCCGCATCGGTAGGATGCCGTCTAAGTTGAGCCT
AGACGCCATCGATGATGGTAGCAAGAGCGGGAGGAGGAGTAGGATGCTGT
CAAAATCGTCCTTCAGGGATGCCAGCAGCAACCGCGGAGTACACCCGCAA
GGTCAGCCTGGCGTTGTGGGGATTGCTAGCCTTCACCTTCCGCGCCCCCT
CGTCATGGGGAGAACGCGCAGCCGTCCCCACTCCCCCGACGCAGTGAGTG
GCGGCGGCACCGAAGTGGGAAGTGGCGCTATTCCCCGGCACGAGCAGAGG
GCGCACGAAGCCAAGGAAGCTCAAGCCTCTGCAGTTGCGGCGGACGACGG
CATCCACGTGCCGCCCAGTGAATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12541:51..1025+

>mRNA_Ecto-sp13_S_contig12541.2106.1 ID=mRNA_Ecto-sp13_S_contig12541.2106.1|Name=mRNA_Ecto-sp13_S_contig12541.2106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12541:51..1025+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTTCGAATTCTCCAGCTTGATGTATCTGACGGGCCTCAAGATCTA
CTACGAGGTTTACCTGGGAAACGTGGCCCCGCCGGAAGAGCTGCCGTCAC
TGTTTGACGCCAGCCGTAGCGGCCGCATCGGTAGGATGCCGTCTAAGTTG
AGCCTAGACGCCATCGATGATGGTAGCAAGAGCGGGAGGAGGAGTAGGAT
GCTGTCAAAATCGTCCTTCAGGGATGCCAGCAGCAACCGCGGAGTACACC
CGCAAGGTCAGCCTGGCGTTGTGGGGATTGCTAGCCTTCACCTTCCGCGC
CCCCTCGTCATGGGGAGAACGCGCAGCCGTCCCCACTCCCCCGACGCAGT
GAGTGGCGGCGGCACCGAAGTGGGAAGTGGCGCTATTCCCCGGCACGAGC
AGAGGGCGCACGAAGCCAAGGAAGCTCAAGCCTCTGCAGTTGCGGCGGAC
GACGGCATCCACGTGCCGCCCAGTGAATAG
back to top