mRNA_Ecto-sp13_S_contig9412.21009.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9412.21009.1
Unique NamemRNA_Ecto-sp13_S_contig9412.21009.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9412.21009.1 vs. uniprot
Match: D7FSI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI0_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 6.020e-31
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 SAPRPSVCVIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKPEPEARAPM 165
            SAP PSVCVIGAGAAGLAA RCLRDEGCRVT+LEKSHDVGGVWRYKPEPEARAPM
Sbjct:   16 SAPPPSVCVIGAGAAGLAASRCLRDEGCRVTVLEKSHDVGGVWRYKPEPEARAPM 70          
BLAST of mRNA_Ecto-sp13_S_contig9412.21009.1 vs. uniprot
Match: A0A6H5JZC1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZC1_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.360e-28
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1
Query:    1 SAPRPSVCVIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKPEPEARAPM 165
            SAP PSVCVIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKPEPEARAPM
Sbjct:   16 SAPPPSVCVIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKPEPEARAPM 70          
BLAST of mRNA_Ecto-sp13_S_contig9412.21009.1 vs. uniprot
Match: A0A183HQN1_9BILA (Flavin-containing monooxygenase n=1 Tax=Onchocerca flexuosa TaxID=387005 RepID=A0A183HQN1_9BILA)

HSP 1 Score: 57.0 bits (136), Expect = 1.800e-9
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   19 VCVIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKPEP 147
            +CVIGAGA+GLAA +   + G +V   EKS D+GG+WRYKP+P
Sbjct:    5 ICVIGAGASGLAATKTCLEYGFQVVCFEKSCDIGGLWRYKPDP 47          
BLAST of mRNA_Ecto-sp13_S_contig9412.21009.1 vs. uniprot
Match: D8U4T5_VOLCA (Flavin-containing monooxygenase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U4T5_VOLCA)

HSP 1 Score: 59.7 bits (143), Expect = 5.090e-9
Identity = 31/42 (73.81%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   25 VIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKPEPE 150
            VIGAGAAGLAA R LRDEG  VT+LE+S  VGGVWRY P  E
Sbjct:  356 VIGAGAAGLAAARELRDEGHDVTVLEQSPYVGGVWRYDPRTE 397          
BLAST of mRNA_Ecto-sp13_S_contig9412.21009.1 vs. uniprot
Match: A0A1Y1HVH2_KLENI (Flavin-containing monooxygenase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HVH2_KLENI)

HSP 1 Score: 59.3 bits (142), Expect = 6.900e-9
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1
Query:   16 SVCVIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKPEPE 150
            SVCVIGAGAAGL A + LR+EG +VT  E++ D+GGVW+Y P+ +
Sbjct:   20 SVCVIGAGAAGLVALKELREEGHQVTAFEQNEDIGGVWKYDPDTD 64          
BLAST of mRNA_Ecto-sp13_S_contig9412.21009.1 vs. uniprot
Match: A0A3B6LXU4_WHEAT (Flavin-containing monooxygenase n=5 Tax=Triticum TaxID=4564 RepID=A0A3B6LXU4_WHEAT)

HSP 1 Score: 59.3 bits (142), Expect = 6.910e-9
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   16 SVCVIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKPEPEARAPM 165
            SVCV+GAG AGLAA R LR EG  VT++E+S DVGG W Y P  +   P+
Sbjct:   14 SVCVVGAGMAGLAAARELRREGHAVTVMEQSSDVGGQWLYDPRTDVVDPL 63          
BLAST of mRNA_Ecto-sp13_S_contig9412.21009.1 vs. uniprot
Match: A0A3P6TTX4_LITSI (Flavin-containing monooxygenase n=1 Tax=Litomosoides sigmodontis TaxID=42156 RepID=A0A3P6TTX4_LITSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.910e-9
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   19 VCVIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKPEP 147
            +CV+GAGA+GLAA +   + G +V   EKS D+GG+WRYKPEP
Sbjct:    5 ICVVGAGASGLAATKICLENGLKVVCFEKSCDIGGLWRYKPEP 47          
BLAST of mRNA_Ecto-sp13_S_contig9412.21009.1 vs. uniprot
Match: UPI001AACB95A (flavin-containing monooxygenase 5-like isoform X1 n=3 Tax=Rana temporaria TaxID=8407 RepID=UPI001AACB95A)

HSP 1 Score: 58.9 bits (141), Expect = 9.450e-9
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   19 VCVIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKPEPE 150
            V VIGAGA+GL A +C  DEG   T  EK+ D+GG+WRYK EPE
Sbjct:   12 VAVIGAGASGLTAIKCCLDEGLEPTCFEKTDDIGGLWRYKDEPE 55          
BLAST of mRNA_Ecto-sp13_S_contig9412.21009.1 vs. uniprot
Match: A0A6I8RVH1_XENTR (Flavin-containing monooxygenase n=2 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A6I8RVH1_XENTR)

HSP 1 Score: 58.5 bits (140), Expect = 1.290e-8
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   16 SVCVIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKPEPE 150
            +V V+GAGA+GLAA +C  DEG   T  E+S D+GG+WRYK  PE
Sbjct:   29 TVAVVGAGASGLAAIKCCVDEGLEPTCFERSEDIGGLWRYKDNPE 73          
BLAST of mRNA_Ecto-sp13_S_contig9412.21009.1 vs. uniprot
Match: UPI00188F3552 (senecionine N-oxygenase-like n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI00188F3552)

HSP 1 Score: 55.5 bits (132), Expect = 1.440e-8
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   19 VCVIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKP 141
            VCVIGAG AGLA+ R L++EG   T+LE +  VGG WRY P
Sbjct:   25 VCVIGAGVAGLASARYLKEEGINFTVLESTRYVGGTWRYDP 65          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9412.21009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSI0_ECTSI6.020e-3194.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZC1_9PHAE3.360e-2898.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A183HQN1_9BILA1.800e-958.14Flavin-containing monooxygenase n=1 Tax=Onchocerca... [more]
D8U4T5_VOLCA5.090e-973.81Flavin-containing monooxygenase n=1 Tax=Volvox car... [more]
A0A1Y1HVH2_KLENI6.900e-960.00Flavin-containing monooxygenase n=1 Tax=Klebsormid... [more]
A0A3B6LXU4_WHEAT6.910e-958.00Flavin-containing monooxygenase n=5 Tax=Triticum T... [more]
A0A3P6TTX4_LITSI6.910e-958.14Flavin-containing monooxygenase n=1 Tax=Litomosoid... [more]
UPI001AACB95A9.450e-961.36flavin-containing monooxygenase 5-like isoform X1 ... [more]
A0A6I8RVH1_XENTR1.290e-857.78Flavin-containing monooxygenase n=2 Tax=Xenopus tr... [more]
UPI00188F35521.440e-860.98senecionine N-oxygenase-like n=1 Tax=Manduca sexta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9412contigEcto-sp13_S_contig9412:5958..6122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score110.9
Seed ortholog evalue1.9e-22
Seed eggNOG ortholog2880.D7FSI0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.N,N-dimethylaniline monooxygenase activity
EggNOG OGsCOG2072@1,KOG1399@2759
Ec32 ortholog descriptionsimilar to flavin-containing monooxygenase family protein
Ec32 orthologEc-11_003800.2
Cds size165
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464208.8744893-CDS-Ecto-sp13_S_contig9412:5957..61221681464208.8744893-CDS-Ecto-sp13_S_contig9412:5957..6122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9412 5958..6122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9412.21009.1prot_Ecto-sp13_S_contig9412.21009.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9412 5958..6122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9412.21009.1

>prot_Ecto-sp13_S_contig9412.21009.1 ID=prot_Ecto-sp13_S_contig9412.21009.1|Name=mRNA_Ecto-sp13_S_contig9412.21009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
SAPRPSVCVIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKPEPE
ARAPM
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mRNA from alignment at Ecto-sp13_S_contig9412:5958..6122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9412.21009.1 ID=mRNA_Ecto-sp13_S_contig9412.21009.1|Name=mRNA_Ecto-sp13_S_contig9412.21009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9412:5958..6122+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTGCACCACGACCATCAGTCTGTGTCATCGGCGCAGGTGCAGCTGGTTT GGCAGCTGGTCGGTGTCTCCGGGACGAGGGGTGTCGAGTGACGATTCTCG AAAAGTCACACGATGTCGGAGGGGTGTGGAGGTACAAGCCGGAGCCGGAA GCTCGGGCTCCAATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9412:5958..6122+

>mRNA_Ecto-sp13_S_contig9412.21009.1 ID=mRNA_Ecto-sp13_S_contig9412.21009.1|Name=mRNA_Ecto-sp13_S_contig9412.21009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9412:5958..6122+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTGCACCACGACCATCAGTCTGTGTCATCGGCGCAGGTGCAGCTGGTTT
GGCAGCTGGTCGGTGTCTCCGGGACGAGGGGTGTCGAGTGACGATTCTCG
AAAAGTCACACGATGTCGGAGGGGTGTGGAGGTACAAGCCGGAGCCGGAA
GCTCGGGCTCCAATG
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