mRNA_Ecto-sp13_S_contig12532.2098.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12532.2098.1
Unique NamemRNA_Ecto-sp13_S_contig12532.2098.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12532.2098.1 vs. uniprot
Match: D7FLT9_ECTSI (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT9_ECTSI)

HSP 1 Score: 383 bits (983), Expect = 2.190e-125
Identity = 285/291 (97.94%), Postives = 287/291 (98.63%), Query Frame = 1 
Query:    1 GGSRLVRWAAALAGAKKPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LSEGGLFTSSPLRHRFRSARRGLTSSGWSXXXXXXXXXXXXXXXXXXXXXDREGGASTLLGKVFKGPLAMYVIRQAKMAAALAALAVSGLGALLMGLCLYFTVRPWGRATYRRLLCSQLAGPLVDSASLLLPRTRVRVTGDSDMLDGLCPCVIVSNTLPGNAFQGLDWWTILQVARAVGAHGYTKVLVSQRLNNTPVLGWILRMLEFPGLGDCYQ 870
            GGSRLVRWAAALAGAKKPD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LSEGGLFTSSPLRHRFRSARRGLTSSGWSXXXXXXXXXXXXXXXXXXXXXDREGGASTLLGKVFKGPLAMYVIRQ KMAAALAALAV GLGALLMGLCLYFTVRPWGRATYRRLLCSQLAGPLVDSASLLLPRTRVRVTGDSDMLDGLCPCVIVSNTLPG+AFQGLDWWTILQVARAVGAHGYTKVLVSQRLN+TPVLGWILRMLEFPGLGDCYQ
Sbjct:   14 GGSRLVRWAAALAGAKKPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEGGLFTSSPLRHRFRSARRGLTSSGWSXXXXXXXXXXXXXXXXXXXXXDREGGASTLLGKVFKGPLAMYVIRQVKMAAALAALAVCGLGALLMGLCLYFTVRPWGRATYRRLLCSQLAGPLVDSASLLLPRTRVRVTGDSDMLDGLCPCVIVSNTLPGDAFQGLDWWTILQVARAVGAHGYTKVLVSQRLNSTPVLGWILRMLEFPGLGDCYQ 304
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12532.2098.1 vs. uniprot
Match: A0A6H5LET2_9PHAE (Acyltransf_C domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LET2_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.810e-40
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 1 
Query:  655 MLDGLCPCVIVSNTLPGNAFQGLDWWTILQVARAVGAHGYTKVLVSQRLNNTPVLGWILRMLEFPGLGDCYQ 870
            MLDGLCPCVIVSNTLPGNAFQGLDWWTILQVARAVGAHGYTKVL SQRLNNTPVLGWILRMLEFPGLGDCYQ
Sbjct:    1 MLDGLCPCVIVSNTLPGNAFQGLDWWTILQVARAVGAHGYTKVLASQRLNNTPVLGWILRMLEFPGLGDCYQ 72
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12532.2098.1 vs. uniprot
Match: A0A4D9D063_9STRA (PlsC domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D063_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.620e-29
Identity = 59/136 (43.38%), Postives = 90/136 (66.18%), Query Frame = 1 
Query:  475 ALAVSGLGALLMGLCLYFTVRPWGRATYRRLLCSQLAGPLVDSASLLLPRTRVRVTGDSDMLDGLCPCVIVSNTLPGNAFQGLDWWTILQVARAVGAHGYTKVLVSQRLNNTPVLGWILRMLEFPGLGDCYQVSNA 882
            AL VS LGA LM L L+  +RP+ R+ YRRL+   +A   +D+ SLLLP T++ +TGDSDM DG+   ++V+N    + ++G DWW +L VAR +G HG  K++V + L   P+LGW++R++E+P +   +  S A
Sbjct:   19 ALVVSSLGANLMALALFLVIRPFSRSLYRRLVSQYVACMWIDALSLLLPGTQIHITGDSDMPDGITAGIVVAN----HQYEG-DWWFMLMVARFLGLHGNVKIIVREGLRRIPLLGWLIRLVEYPTISSSWSHSRA 149
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12532.2098.1 vs. uniprot
Match: A0A1Q2U6T5_9STRA (Lysophosphatidate acyltransferase 3 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1Q2U6T5_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.750e-23
Identity = 52/134 (38.81%), Postives = 85/134 (63.43%), Query Frame = 1 
Query:  478 LAVSGLGALLMGLCLYFTVRPWGRATYRRLLCSQLAGPLVDSASLLLPRTRVRVTGDSDMLDGLCPCVIVSNTLPGNAFQGLDWWTILQVARAVGAHGYTKVLVSQRLNNTPVLGWILRMLEFPGLGDCYQVSN 879
            L  S +GA +M L L+  +RP+ R+ YRRL+   +A   +D+ SLLLP T + +  DSDM DG+   ++V+N    + ++G DWW +L VAR +G HG  K++V + L   P+LGW++R++E+P +   + +S 
Sbjct:   20 LVTSSIGANMMALALFLVIRPFSRSLYRRLVSQCVACMWIDALSLLLPGTNIHIAADSDMPDGITAGIVVAN----HQYEG-DWWFMLMVARFLGLHGNVKIIVREGLKKIPLLGWLVRLVEYPFISSSWSLSR 148
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12532.2098.1 vs. uniprot
Match: A0A7S1FRJ7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRJ7_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.130e-19
Identity = 47/120 (39.17%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:  490 GLGALLMGLCLYFTVRPWGRATYRRLLCSQLAGPLVDSASLLLPRTRVRVTGDSDMLDGLCPCVIVSNTLPGNAFQGLDWWTILQVARAVGAHGYTKVLVSQRLNNTPVLGWILRMLEFP 849
            G G  L+   LY  VRP+ RA+YRR+  S  A   +D+  L+LP  R+RVTGDSD+  G+   V+V+N       +  DWW +L + R VG  G  K+ + + +   P++G+++R+LEFP
Sbjct:   32 GTGLSLLLTLLYLLVRPFSRASYRRVAASYAAAMFLDAMGLVLPNVRIRVTGDSDVPAGMGTSVVVANRQ-----RECDWWVLLMMGRCVGLQGSIKIFLKEEMAKLPLVGYVVRLLEFP 146
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12532.2098.1 vs. uniprot
Match: A0A7S1FRI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRI0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 9.510e-19
Identity = 47/120 (39.17%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:  490 GLGALLMGLCLYFTVRPWGRATYRRLLCSQLAGPLVDSASLLLPRTRVRVTGDSDMLDGLCPCVIVSNTLPGNAFQGLDWWTILQVARAVGAHGYTKVLVSQRLNNTPVLGWILRMLEFP 849
            G G  L+   LY  VRP+ RA+YRR+  S  A   +D+  L+LP  R+RVTGDSD+  G+   V+V+N       +  DWW +L + R VG  G  K+ + + +   P++G+++R+LEFP
Sbjct:   32 GTGLSLLLTLLYLLVRPFSRASYRRVAASYAAAMFLDAMGLVLPNVRIRVTGDSDVPAGMGTSVVVANRQ-----RECDWWVLLMMGRCVGLQGSIKIFLKEEMAKLPLVGYVVRLLEFP 146
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12532.2098.1 vs. uniprot
Match: A0A6H5KZR1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZR1_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 8.280e-15
Identity = 88/104 (84.62%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 GGSRLVRWAAALAGAKKPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEGGLFTSSPLRHRFRSARRGLTSSGWS 312
            GGSRLVRWAAALAGAKKPDSXXXXXXXXXXXXXXXX              XXXXXXXXXXXXXXXXXXXXXXX  LSEGGLFTSSPLRHRFRSARRGLTSSGWS
Sbjct:   10 GGSRLVRWAAALAGAKKPDSXXXXXXXXXXXXXXXXEAGSNAVEPSMHTPXXXXXXXXXXXXXXXXXXXXXXXGGLSEGGLFTSSPLRHRFRSARRGLTSSGWS 113
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12532.2098.1 vs. uniprot
Match: A0A7S1UM42_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UM42_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.390e-11
Identity = 51/142 (35.92%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:  472 AALAVSGLGALLMGLC-LYFTVRPWGRATYRRLLCSQLAGPLVDSASLLLPRTRVRVTGDSDMLDGLCPCVIVSNTLPGNAFQGLDWWTILQVARAVGAHGYTKVLVSQRLNNTPVLGWILRMLEFPGLGDCYQVSNAAHTE 894
            A++A+  +G LL+ L  LY  VRP+  + YRRL         +D+ +LLLP TR+ +TGDSD+   +   V+VSN L     +  DWW++L + R VG  G  KV + Q      VL W    L  P  G     S++A  +
Sbjct:   77 ASIAMVCVGGLLITLTILYVVVRPFSLSVYRRLAAQWGEAAFLDAMALLLPNTRLYLTGDSDVPPPVGVSVLVSNHL----MEVGDWWSLLMLGRVVGLRGSMKVFMRQE-----VLQWSKTKLPSPSTGTNGSNSSSATAQ 209
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12532.2098.1 vs. uniprot
Match: A0A7S1YRE0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YRE0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 9.770e-10
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:  463 AALAALAVSGLGAL-LMGLCLYFTVRPWGRATYRRLLCSQLAGPLVDSASLLLPRTRVRVTGDSDMLDGLCPCVIVSNTLPGNAFQGLDWWTILQVARAVGAHGYTKVLV 789
            A L ALA S LG   L+GL LY  VRP+    YRRL  S  A  ++D+ SL+LP TR+ +TGDSD+   +   ++V N    + + G DWW+IL + R +G  G  K  +
Sbjct:   56 AVLCALAQSVLGLFTLLGL-LYLVVRPFSSTVYRRLAASIGASYMIDALSLILPNTRLYLTGDSDIPSPVGTSLLVCN----HVWDG-DWWSILMLGRCIGLRGTIKAFL 159
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12532.2098.1 vs. uniprot
Match: A0A7S4QH82_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QH82_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.640e-9
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:  463 AALAALAVSGLGAL-LMGLCLYFTVRPWGRATYRRLLCSQLAGPLVDSASLLLPRTRVRVTGDSDMLDGLCPCVIVSNTLPGNAFQGLDWWTILQVARAVGAHGYTKVLV 789
            A L ALA S LG   L+GL LY  VRP+    YRRL  S  A  ++D+ SL+LP TR+ +TGDSD+   +   ++V N    + + G DWW+IL + R +G  G  K  +
Sbjct:   56 AVLCALAQSVLGLFTLLGL-LYLVVRPFSSTVYRRLAASIGASYMIDALSLILPNTRLYLTGDSDIPSPVGTSLLVCN----HVWDG-DWWSILMLGRCIGLRGTIKAFL 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12532.2098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FLT9_ECTSI2.190e-12597.941-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A6H5LET2_9PHAE1.810e-4098.61Acyltransf_C domain-containing protein (Fragment) ... [more]
A0A4D9D063_9STRA2.620e-2943.38PlsC domain-containing protein n=1 Tax=Nannochloro... [more]
A0A1Q2U6T5_9STRA2.750e-2338.81Lysophosphatidate acyltransferase 3 n=1 Tax=Nannoc... [more]
A0A7S1FRJ7_9STRA3.130e-1939.17Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1FRI0_9STRA9.510e-1939.17Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A6H5KZR1_9PHAE8.280e-1584.62Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1UM42_9STRA3.390e-1135.92Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S1YRE0_9STRA9.770e-1041.82Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4QH82_9STRA1.640e-941.82Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12532contigEcto-sp13_S_contig12532:662..4505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score385.2
Seed ortholog evalue2.8e-104
Seed eggNOG ortholog2880.D7FLT9
Preferred nameLPGAT1
Model size900
KEGG rclassRC00004,RC00037
KEGG koko:K13514,ko:K15176
KEGG ReactionR09036
KEGG Pathwayko00564,map00564
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0003841,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0012505,GO:0016020,GO:0016021,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0019216,GO:0019217,GO:0019222,GO:0019637,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0036148,GO:0036149,GO:0042171,GO:0042175,GO:0042304,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045723,GO:0045834,GO:0045923,GO:0046471,GO:0046486,GO:0046488,GO:0046889,GO:0046890,GO:0047144,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0062012,GO:0062013,GO:0065007,GO:0071617,GO:0071704,GO:0080090,GO:0090407,GO:0098827,GO:1901576
Exons5
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0204@1,KOG1505@2759
Cds size900
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462668.2073596-CDS-Ecto-sp13_S_contig12532:661..7811681462668.2073596-CDS-Ecto-sp13_S_contig12532:661..781Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12532 662..781 -
1681462668.22017-CDS-Ecto-sp13_S_contig12532:1172..13021681462668.22017-CDS-Ecto-sp13_S_contig12532:1172..1302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12532 1173..1302 -
1681462668.2296348-CDS-Ecto-sp13_S_contig12532:1969..20881681462668.2296348-CDS-Ecto-sp13_S_contig12532:1969..2088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12532 1970..2088 -
1681462668.2381861-CDS-Ecto-sp13_S_contig12532:2919..30301681462668.2381861-CDS-Ecto-sp13_S_contig12532:2919..3030Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12532 2920..3030 -
1681462668.246843-CDS-Ecto-sp13_S_contig12532:4085..45051681462668.246843-CDS-Ecto-sp13_S_contig12532:4085..4505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12532 4086..4505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12532.2098.1prot_Ecto-sp13_S_contig12532.2098.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12532 662..4505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12532.2098.1

>prot_Ecto-sp13_S_contig12532.2098.1 ID=prot_Ecto-sp13_S_contig12532.2098.1|Name=mRNA_Ecto-sp13_S_contig12532.2098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=300bp
GGSRLVRWAAALAGAKKPDSPPPRAASSGTKQHRRAEAGSKAVEPSMLTP
PIDGGGTDHDGGGGADSGDPPPAGGLSEGGLFTSSPLRHRFRSARRGLTS
SGWSSSSTSSAAGWVGGGGGSGAGGDREGGASTLLGKVFKGPLAMYVIRQ
AKMAAALAALAVSGLGALLMGLCLYFTVRPWGRATYRRLLCSQLAGPLVD
SASLLLPRTRVRVTGDSDMLDGLCPCVIVSNTLPGNAFQGLDWWTILQVA
RAVGAHGYTKVLVSQRLNNTPVLGWILRMLEFPGLGDCYQVSNAAHTER*
back to top

mRNA from alignment at Ecto-sp13_S_contig12532:662..4505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12532.2098.1 ID=mRNA_Ecto-sp13_S_contig12532.2098.1|Name=mRNA_Ecto-sp13_S_contig12532.2098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3844bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12532:662..4505- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGGAGCCGTCTAGTCCGCTGGGCGGCCGCTCTTGCAGGCGCCAAGAA
GCCCGACTCTCCTCCCCCCCGCGCTGCGTCCTCCGGCACCAAGCAACACC
GACGCGCCGAGGCCGGCAGCAAGGCCGTTGAACCATCGATGCTCACGCCT
CCCATCGACGGAGGCGGGACCGACCACGACGGTGGCGGCGGGGCGGACAG
CGGCGACCCCCCCCCTGCTGGCGGCCTATCGGAAGGGGGCCTGTTCACGT
CCTCCCCGCTGCGGCATCGGTTTCGTTCGGCCAGGCGAGGGTTGACCAGC
AGCGGGTGGTCTTCGTCGTCTACTTCGTCCGCGGCAGGGTGGGTCGGCGG
GGGCGGGGGCTCCGGGGCGGGAGGAGACCGGGAAGGGGGGGCTTCGACGT
TACTCGGAAAGGTTTTCAAGGTGACGACTACAGAACCAGAAGTAGACTTT
TGGGGGGGGGGGGGGGGTGCGTACATGATACACATTTTCACACGGCAGTA
TGTTTGGCTTTGCGTAGGTCAGCAGAGGATACATTGGAGAGGCAGATCTG
TTCATGTTTCTGTTGGTGTTGGTGTGGGCGTATGTGTTCAGCACGAAACT
AAGGCGTGACTAGAGCTGCCCGCCGTCCCTTTACACCACCCACAAGAATT
GAAATCGTGCACCTATTCACAGACGACGTATTCGTGACAACGACTTTCAA
GGTTGGCCGGTGTTCCCCATCACAGCCAGTAGTGGTCTGTGTTCACTATA
AGGCCGCATAGTTAAGGACGGTCGCACTGATCAAGGCAGGTGACATTGCA
CGTCACTGATGGAAAACTCGAGTTGTCTTGTGCTGCTCTGAATTGTGACG
AGTGCCCGGTGTAAGGATGGCCGAATCCCTCGACGCCACCGTGGGGCCTT
TGTCAGGGACCACTACCACGGTGTAAAGAACGCCGCAACCCTCACACAAC
TCGCTCGCTCACACGTGAACCACCAGGCTACAACGCGTCATTTCGTCCAG
CACCATCCCTTTGCATCGCTGATATTCTTCCCGCGAAACACTGTCGAAGT
CTCTGCTTTTCCCGGGGGGCCTACGGCAGCGCTGGCGTTTGGGTTTTGAC
GCAAGTCACGGCTGATGTATGAAAACACGTGCATAGATGAGGGCCAATCT
TGGTAGGGAAGTGCAACAGTATGAATGTGACAGCATAACTTGAATTCCTG
TTCGAACCTCAAGAACTTACGCTGATATTTCCCGGAGAACGCTACGTGTC
GGTGGCACTCCTTCTTGGTAGACGGGCCTACCGGCAAGACCGAGGTAGTC
TTTCTGTCCAAGGAGGTCTATTTAGGCTTTCTAAAGGTAGGCGTCAAGTG
ATGCCGCCTTTGTCTTGACCCGGCGTTAGCCTTGGTCATGTCATTCGGCA
ACGTGTTCATTCTCGTTTTTGTCCGTTTTCTTTTCATTCTTGTCCCTCTC
TGATTGTTTCTTGCTTCTTGGCCAGGGTCCTCTGGCCATGTACGTAATCC
GGCAAGCGAAAATGGCTGCCGCCTTGGCTGCCCTTGCCGTCTCTGGGCTG
GGGGCCCTGCTGATGGGACTCTGCCTCTACTTCACGGTACGTACGTTCGA
GCGACTCGCTTCTGGTGTTTGTTGGGGTTGCGTTTTAGGTTTGGAGAATA
GTCGGGAGGGAAACAGAGTGGTACAGCAGAGCAGAGACTTTGTGAGTGTG
GCTTAAGTCGAGCTAGGTCCGCGGGGCTTGGGTACGGTGCACCCCACGAG
ATACGGCACCCTCTGAACCGATTCTCGAAACTAGATTTCTTCACAACAAC
GAGAGAAAACAATACCCAAACGGGTAAACAATATAGCACTTGAACAGGTA
CACATCATGAAAGCCTTTCCAAGGACGTGAGGGTCGGGACTATCGGTCAC
CCTCCCCGCTGCTCTATGGAGAAAACGAGACACAATAAACGGACGGATCG
GTCGATGTTGTCCGTCACCTTCACTTTGCTGTGGAGATATCGAGAAATTC
GAAGATGACGGTCCAAACGGGGTGTGGTGTCTTGTGTGGAGTATGCGACA
CCTCGTGCCGCCACAGCAGTACGGTACGTGTGTGGACGCAGTGTTGGTCG
TGTTGTGGTGCGCTGCTCCTACTTCCGTTCTCGCTCCGGGGGTCCACGCA
GACAGAGATCAGAGAGTGCCGGGGGCAGGGGGTGTTGGCAAGGCTTCGCT
ACTACTGTAGACAGCTGTACGATCTTGCCTCATCTCCCGAGAGCAAAAGG
CCACGATACGGGGCCACGCAGAGTGTTCATCTCATGCCTTCGACATTTTG
TGAAGTTCTCGCACTCCCCGTGTGGAGGTCGTATTTGGTTGCGATACGTT
GATGATGCTGACGTCTATTCGGCCGCGCGTGTTACTGGATCATGATGCGG
GCTGTTGGATCGAAAAGGTGCGGCCTTGGGGACGGGCGACCTACCGGCGC
CTTCTCTGTTCTCAACTGGCGGGGCCCCTCGTGGATTCGGCGTCGCTGCT
TCTTCCGCGCACAAGGGTCAGGGTGACGGGTGACAGGTGGGTGCTCTGTT
TTTATTTTTTTTCTTGCATCCGATTTTAGCCAGTCGCTGGTAGTGTCATG
GTGTAGTTCTGTACCGCGAAAGTGTAGGTGATTGTACATCCCCCAGACCG
ACTTTGAAAGCTCGATTGCTCCTCAGCCAAGAGGCTGCCAGTCACGAAAA
GGGTGACGTGGGGAGAATATATCGTCGTTCGAAAGGCGTCTTTCCTTGCA
TCATGCATGCGTCCCTTGGTGTGGACGCCCTCGTGGTTGCCGAGTTATTG
GTTCTTTGGAATCAATTCCGTGTAAAGTGTGGGCCGTGTGCAATCACTCG
CGCACGGTTGTGTCGGATGATTCCTCTCCGTGCACAGGGCTATCATCGAT
ATCCTGCTGGATGGATGCGCGCTCTGCGTTCGAGTGTTTTGTCCTGGTGT
GGAAGGAAGTCGCTGCTCGTTTAGTTCCAAACAAGATTTTGAGGAGCATC
GAGAAAGGTCCTAATAACTTATGGCAACTTATGGCCCCTCGTGTATCTCT
CTCCCACGTGCGTGCTTGAATTTGTAGTTGCACCACATTCCTCGCAGAAA
TCCGGACAATTAGTTGACAAAAAACAAACCCACACACTTTTTTCTCTGTC
ACGACGATACATTCGCGCGGGGTGGCGCACCCAACCGCATAACACAACCG
CAGCGACATGCTGGACGGACTATGCCCGTGCGTGATCGTGTCCAACACAC
TTCCTGGCAACGCCTTCCAAGGGCTTGACTGGTGGACCATCCTACAGGTG
GCCAGGGCTGTAGGCGCGCACGGCTACACCAAGGTTAGTCAAGGTTTTGA
TGCCACTGCAACGTGCTGCTGCCTGCTGCTTGCTGATGACGATGATGATG
ATGATGATGCTGGTACTGCTGTATTTGAGTACTTTGTCTTATCCATCTGC
CTTCTGCTGTACTTAAGCGTTGAGTGCGCTTTTTTTTGTCATTGCCTTTT
TTTGACGCACTATATTTTTTTCGCAGTCCCTCGTAGATCCACCTGCCCTG
CGGCCTTGCCTCTCTCGGCCGCCTTCAGCGCTCTTGCCTTCATTCATTTG
CCGCTGCGCGCCACTTCTGCCCCCTAGTACGTGCCACACAGCAGTCACAA
CACCAACAGCCACGCATACACGATCACCTCCCTCCCTCGACTTTCTGCCG
TGCGTTGCGTACGCTTTTTTTCAGGTCCTGGTTAGCCAACGGCTCAACAA
CACCCCAGTATTGGGCTGGATCTTGAGGATGTTAGAGTTTCCAGGGTTGG
GCGACTGCTATCAGGTGAGCAATGCGGCGCATACGGAGAGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12532:662..4505-

>mRNA_Ecto-sp13_S_contig12532.2098.1 ID=mRNA_Ecto-sp13_S_contig12532.2098.1|Name=mRNA_Ecto-sp13_S_contig12532.2098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12532:662..4505- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGGAGCCGTCTAGTCCGCTGGGCGGCCGCTCTTGCAGGCGCCAAGAA
GCCCGACTCTCCTCCCCCCCGCGCTGCGTCCTCCGGCACCAAGCAACACC
GACGCGCCGAGGCCGGCAGCAAGGCCGTTGAACCATCGATGCTCACGCCT
CCCATCGACGGAGGCGGGACCGACCACGACGGTGGCGGCGGGGCGGACAG
CGGCGACCCCCCCCCTGCTGGCGGCCTATCGGAAGGGGGCCTGTTCACGT
CCTCCCCGCTGCGGCATCGGTTTCGTTCGGCCAGGCGAGGGTTGACCAGC
AGCGGGTGGTCTTCGTCGTCTACTTCGTCCGCGGCAGGGTGGGTCGGCGG
GGGCGGGGGCTCCGGGGCGGGAGGAGACCGGGAAGGGGGGGCTTCGACGT
TACTCGGAAAGGTTTTCAAGGGTCCTCTGGCCATGTACGTAATCCGGCAA
GCGAAAATGGCTGCCGCCTTGGCTGCCCTTGCCGTCTCTGGGCTGGGGGC
CCTGCTGATGGGACTCTGCCTCTACTTCACGGTGCGGCCTTGGGGACGGG
CGACCTACCGGCGCCTTCTCTGTTCTCAACTGGCGGGGCCCCTCGTGGAT
TCGGCGTCGCTGCTTCTTCCGCGCACAAGGGTCAGGGTGACGGGTGACAG
CGACATGCTGGACGGACTATGCCCGTGCGTGATCGTGTCCAACACACTTC
CTGGCAACGCCTTCCAAGGGCTTGACTGGTGGACCATCCTACAGGTGGCC
AGGGCTGTAGGCGCGCACGGCTACACCAAGGTCCTGGTTAGCCAACGGCT
CAACAACACCCCAGTATTGGGCTGGATCTTGAGGATGTTAGAGTTTCCAG
GGTTGGGCGACTGCTATCAGGTGAGCAATGCGGCGCATACGGAGAGGTGA
back to top