mRNA_Ecto-sp13_S_contig9331.20931.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9331.20931.1
Unique NamemRNA_Ecto-sp13_S_contig9331.20931.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9331.20931.1 vs. uniprot
Match: D7FIM3_ECTSI (Reelin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIM3_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.260e-37
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 2 
Query:    2 GLPITPRFHLTTISRGVMLRVHRRVVCPCERRLEHCGGMHSRDELVCVFVRDALTFNEMLRGDDTVE 202
            GLPITPRFHLTTISRGVMLRVHRRVVCPCERRLE CGGMHSRDELVCVFVRDALTFNEMLRGDDTV+
Sbjct:  934 GLPITPRFHLTTISRGVMLRVHRRVVCPCERRLEQCGGMHSRDELVCVFVRDALTFNEMLRGDDTVD 1000
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BLAST of mRNA_Ecto-sp13_S_contig9331.20931.1 vs. uniprot
Match: A0A836CJ23_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ23_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.380e-23
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:    2 GLPITPRFHLTTISRGVMLRVHRRVVCPCERRLEHCGGMHSRDELVCVFVRDALTFNEMLRGDDTVE 202
            GLP+TPRF LTTI  G+ LRVHR+  CPC+ R EHC  MHSRDE+V +FVRD  TF E+L GDD+++
Sbjct:  848 GLPVTPRFLLTTIQSGLYLRVHRQAYCPCDARFEHCSAMHSRDEVVSIFVRDVSTFRELLEGDDSIQ 914
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BLAST of mRNA_Ecto-sp13_S_contig9331.20931.1 vs. uniprot
Match: A0A8J2SRH3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRH3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.710e-10
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 2 
Query:    2 GLPITPRFHLTTISRGVMLRVHRRVVCPCERRLEHCGGMHSRDELVCVFVRDALTFNEMLRGDD 193
            GLP+TP   LT ++ G  +   RR  CPC  R   C  MHSR ++V +FV D  TF   LRG++
Sbjct: 1112 GLPVTPAIRLTKVAGGHYVTYMRRTQCPCFHRFTECSTMHSRRQIVVLFVEDVTTFIGTLRGEN 1175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9331.20931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FIM3_ECTSI1.260e-3797.01Reelin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A836CJ23_9STRA1.380e-2362.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SRH3_9STRA4.710e-1043.75Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9331contigEcto-sp13_S_contig9331:3368..5050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size267
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_000290.2
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464202.1813745-CDS-Ecto-sp13_S_contig9331:3367..34121681464202.1813745-CDS-Ecto-sp13_S_contig9331:3367..3412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9331 3368..3412 +
1681464202.1924005-CDS-Ecto-sp13_S_contig9331:3837..40171681464202.1924005-CDS-Ecto-sp13_S_contig9331:3837..4017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9331 3838..4017 +
1681464202.202513-CDS-Ecto-sp13_S_contig9331:5010..50161681464202.202513-CDS-Ecto-sp13_S_contig9331:5010..5016Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9331 5011..5016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464202.213065-UTR-Ecto-sp13_S_contig9331:5016..50501681464202.213065-UTR-Ecto-sp13_S_contig9331:5016..5050Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9331 5017..5050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9331.20931.1prot_Ecto-sp13_S_contig9331.20931.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9331 3368..5016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9331.20931.1

>prot_Ecto-sp13_S_contig9331.20931.1 ID=prot_Ecto-sp13_S_contig9331.20931.1|Name=mRNA_Ecto-sp13_S_contig9331.20931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
RVANNAEIPPHHYQQGSDAPSSPASRLSMRAAPRALRWHAQPRRACLRLR
PRCLNLQRDAPGGRHRRVATALHGEG*
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mRNA from alignment at Ecto-sp13_S_contig9331:3368..5050+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9331.20931.1 ID=mRNA_Ecto-sp13_S_contig9331.20931.1|Name=mRNA_Ecto-sp13_S_contig9331.20931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1683bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9331:3368..5050+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTTGCCAATAACGCCGAGATTCCACCTCACCACTATCAGCAGGTTAG
TCATGCCGGGTACAGCGGCAGGCTTTGTGTGTATACATCCAGGCAGGCTA
TGTCTGGTATTGCCATTTGGTGCGTAGCAATATTTTTTCAACGTTGATAT
TGTGGTTATTGCATAAGCAACACCGAACAAATCCTCTGGATGAAACGTGC
TACGGTAAGAGGTAGTGGGGTCTCGTCGGCGGGGCGTCATCGGTGCTGTT
CCCTCGTGTTTGTCGTACGTACCGGTACGCACATGATGTAAAACGGATGC
AGCAGTGCGTCGCCTGATACTTCCTCGCCAACCTCGCTGATGCACGTGGC
CCATTTCTGGGGGTTGTTCCTGCGACCTTCACTGATTTAGGTCGCCGAAA
GTCTAACTAAAACACCTGGCTATGGGTTCCTGTGGTTGCGTTGTGTTGCA
TCTGAAATGATCGAAACCAGGGGAGTGATGCTCCGAGTTCACCGGCGAGT
CGTTTGTCCATGCGAGCGGCGCCTAGAGCATTGCGGTGGCATGCACAGCC
GCGACGAGCTTGTCTGCGTCTTCGTCCGAGATGCCTTAACCTTCAACGAG
ATGCTCCGGGGGGACGACACCGTAGAGTAGCAACCGCACTACATGGAGAG
GTAATCAACTGTCTGAAAACGTTTCAACCCTTCCAGACCAATAGAACACT
ATTTGGTGCGTGCAAGCCACAATGATGGCAATGACAACATGACCCAACCT
TGTAGATAGTGATTCAATAAGCACCTCTTCTTCAGTTTGGCACGATTGGA
TGCACCGTTTTGTTGAAGCAGAGACCGATAGACGGCCATCGAGAATCTGG
ATGTGTAAACGCTCCGCCATGCGGATATAGCAGCGAATAGAGTCACCGCC
GAAGTCGTCATTCAGCCGCCAAAGTACTGGCAAGTTGTGATCCAGTCGGG
AACCGCGAGCGTGCGTTAGCAAGAGCGAACCAAACGTGTAGCTGAGGCGA
TCAACAATCCTATCGTTTTTGGCGAGGTCTTCGGCGCTGTTTGAGCCACA
TCGACAACCCCGGCGGGCTTCCTCCTTGCTACTGCAGTATTGTCATCCCT
CCTACTTCCAGGCTTGTGTGACCCCCATCCTCGAAAGGGGCAGTGGGGTA
TTCCGTTGGTTTACACTCGGTGAAAGTGTTGTACGACCAATAAAACACGG
GACAAAGCGGAGAAAATCAAGCTACCCACACACGACCAAAGCGCCGCAGC
TTTCCTCTCACCGGTGCGTCAAGCATCCACCGAAAGGTGTAGACTGATCG
ACAGATTAGCTAGAACAAAACTCCCCGACATGCTGGTCATCTTTGGTGCC
ATCAATAGCCGTGTTGGTGACGCCAGGAGAAACTGAACGCACATGAGAGT
AATCCTGACCCAGGCGCTACGCTGTGACCCAACGAAAACCCAGCGTTGAT
CAGTCTTGCACGTGGACAGCCTACCTGTGCCAACAGGGAAGAACGCCAGG
TGCGGGGAGTGGTATACGGTGTCCCCTGAAAAGACGACGTCAGTCTACCC
TTCCCGAAAACAACAGCAATTTATTCGGCAGGCCGGTCTATCCCACGAAA
GAGAACGTACCCTACGCACGGTAATCCTGCCCGACCTACGCAGGGGTGAT
AGTTGCCTGCCTCCCTTTGCAATGGGATAAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9331:3368..5050+

>mRNA_Ecto-sp13_S_contig9331.20931.1 ID=mRNA_Ecto-sp13_S_contig9331.20931.1|Name=mRNA_Ecto-sp13_S_contig9331.20931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9331:3368..5050+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTTGCCAATAACGCCGAGATTCCACCTCACCACTATCAGCAGGGGAG
TGATGCTCCGAGTTCACCGGCGAGTCGTTTGTCCATGCGAGCGGCGCCTA
GAGCATTGCGGTGGCATGCACAGCCGCGACGAGCTTGTCTGCGTCTTCGT
CCGAGATGCCTTAACCTTCAACGAGATGCTCCGGGGGGACGACACCGTAG
AGTAGCAACCGCACTACATGGAGAGGGGTGA
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