prot_Ecto-sp13_S_contig93287.20926.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig93287.20926.1
Unique Nameprot_Ecto-sp13_S_contig93287.20926.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length59
Homology
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BLAST of mRNA_Ecto-sp13_S_contig93287.20926.1 vs. uniprot
Match: D7G1I2_ECTSI (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I2_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 6.360e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 
Query:    1 KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKK 47
            KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKK
Sbjct:  455 KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKK 501
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BLAST of mRNA_Ecto-sp13_S_contig93287.20926.1 vs. uniprot
Match: A0A6H5L0Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.210e-19
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 
Query:    1 KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKK 47
            KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSK+
Sbjct:  534 KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKE 580
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig93287.20926.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1I2_ECTSI6.360e-20100.00PsbB mRNA maturation factor Mbb1, chloroplast n=1 ... [more]
A0A6H5L0Y9_9PHAE2.210e-1997.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13414TPR_11coord: 1..24
e-value: 1.3E-6
score: 28.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..53
e-value: 7.7E-8
score: 34.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..38
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..22
score: 11.214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig93287contigEcto-sp13_S_contig93287:290..466 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig93287.20926.1mRNA_Ecto-sp13_S_contig93287.20926.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig93287 290..466 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig93287.20926.1 ID=prot_Ecto-sp13_S_contig93287.20926.1|Name=mRNA_Ecto-sp13_S_contig93287.20926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
KLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKKVRG
IVFWVVVQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom