mRNA_Ecto-sp13_S_contig9328.20924.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9328.20924.1
Unique NamemRNA_Ecto-sp13_S_contig9328.20924.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9328.20924.1 vs. uniprot
Match: A0A6H5JP10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP10_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.840e-21
Identity = 50/59 (84.75%), Postives = 52/59 (88.14%), Query Frame = 2 
Query:   23 MFSLCAISKLLRPLALCARGSFGLCLLSTPVSRRIAEEGAVRGQAPLRIGTTAIMSYGG 199
            MFSLC+ SKLL PLALC RGSFGL +L TPVSRRIA EGAVRGQAP RIGTTAIMSYGG
Sbjct:    1 MFSLCSTSKLLLPLALCVRGSFGLRVLLTPVSRRIAGEGAVRGQAPFRIGTTAIMSYGG 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9328.20924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JP10_9PHAE3.840e-2184.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9328contigEcto-sp13_S_contig9328:2497..3235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size271
Hectar predicted targeting categorysignal peptide
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464201.819854-CDS-Ecto-sp13_S_contig9328:2496..26011681464201.819854-CDS-Ecto-sp13_S_contig9328:2496..2601Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9328 2497..2601 -
1681464201.8318403-CDS-Ecto-sp13_S_contig9328:3070..32351681464201.8318403-CDS-Ecto-sp13_S_contig9328:3070..3235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9328 3071..3235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9328.20924.1prot_Ecto-sp13_S_contig9328.20924.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9328 2497..3235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9328.20924.1

>prot_Ecto-sp13_S_contig9328.20924.1 ID=prot_Ecto-sp13_S_contig9328.20924.1|Name=mRNA_Ecto-sp13_S_contig9328.20924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
GRRWLPPHVLPLCDQQASPTASLVCAWILRFVSSLDARVPKNSRRRSCQR
TGTFADWHHSNHELRRRRRERRVLQEQVRRWRERRGRRAR
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mRNA from alignment at Ecto-sp13_S_contig9328:2497..3235-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9328.20924.1 ID=mRNA_Ecto-sp13_S_contig9328.20924.1|Name=mRNA_Ecto-sp13_S_contig9328.20924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=739bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9328:2497..3235- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCGGCGCTGGCTTCCACCGCATGTTCTCCCTTTGTGCGATCAGCAAGC
TTCTCCGACCGCTAGCCTTGTGTGCGCGTGGATCCTTCGGTTTGTGTCTT
CTCTCGACGCCCGTGTCCCGAAGAATAGCAGAAGAAGGAGCTGTCAGAGG
ACAGGCACCTTTGCGGTGAGATCTTCTTACAGCAATGAGTGCGAGTGTGC
GGTGTACGTTGGGTACCCATCAATGGTGGGTATGACGTGGGTACAGCTAG
TGCTTTGGAGAGTGGGTACCGGCTGGTTGGGCCGGTTGTATGCAGTAGCA
CACGCTTGTTGTATGTCACATGCACGCTTTCGAAGCGATCGGTAAGATTT
TATTGAATGTGGTGTGTATGATACCGCTTGTTGTGCAGCCACCGAGGTTT
TTAATGTTGTGTCCGCCAATGGGTAATGAAAAGCTGAGAAGTATACGCCG
TAGGTGCCTACTTACTCTGCTGTACGTATGCACCCCGCTCTCTTTGTCGT
ACATGTTTGTGCTGCACCTCGCATGCGCTGACCTCCACGACGAAAAATGC
GACAGGATACCTTACGCATGCGTTCAACACTACAGTTGATCCTATGCATA
ACCTCCCGCCCATGTATTTGTATCTTCGCGTTAGGATTGGCACCACAGCA
ATCATGAGCTACGGCGGCGGCGGCGGGAGAGGAGAGTTTTACAAGAACAA
GTACGGCGGTGGAGGGAGAGGAGGGGGCGGCGGGCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9328:2497..3235-

>mRNA_Ecto-sp13_S_contig9328.20924.1 ID=mRNA_Ecto-sp13_S_contig9328.20924.1|Name=mRNA_Ecto-sp13_S_contig9328.20924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9328:2497..3235- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCGGCGCTGGCTTCCACCGCATGTTCTCCCTTTGTGCGATCAGCAAGC
TTCTCCGACCGCTAGCCTTGTGTGCGCGTGGATCCTTCGGTTTGTGTCTT
CTCTCGACGCCCGTGTCCCGAAGAATAGCAGAAGAAGGAGCTGTCAGAGG
ACAGGCACCTTTGCGGATTGGCACCACAGCAATCATGAGCTACGGCGGCG
GCGGCGGGAGAGGAGAGTTTTACAAGAACAAGTACGGCGGTGGAGGGAGA
GGAGGGGGCGGCGGGCGAGG
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