prot_Ecto-sp13_S_contig9321.20917.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9321.20917.1
Unique Nameprot_Ecto-sp13_S_contig9321.20917.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length272
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9321.20917.1 vs. uniprot
Match: A0A6H5KIA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.750e-15
Identity = 111/228 (48.68%), Postives = 119/228 (52.19%), Query Frame = 0 
Query:    1 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVPDRISFDCLMKAC--GNGGDWEQALV------GRAPSSS-----------------------------------VRRV----------------------------------RMPGLGIRPSVESYSIGLTXXXXXXXXXXXXVLLREMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPNV 151
            VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDV   ++F  ++ AC  G G DW  A+       G   SS                                    V+++                                  RMPGLG             XXXXXXXXXXXX    EMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPNV
Sbjct:  298 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDV---VTFSAVISACCGGGGSDWRVAMQILSEARGSGGSSDGANTDGGGMKLDVVIYNTVMSLCADAGEWKQVLHLVKQMSEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRMPGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPNV 522
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BLAST of mRNA_Ecto-sp13_S_contig9321.20917.1 vs. uniprot
Match: D7FKL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL0_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.490e-15
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 0 
Query:    1 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVPDRISFDCLMKAC--GNGGDWEQAL 57
            VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDV   ++F  ++ AC  G G DW  A+
Sbjct:  111 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDV---VTFSAVISACCGGGGSDWRVAM 166
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BLAST of mRNA_Ecto-sp13_S_contig9321.20917.1 vs. uniprot
Match: D7FKL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL1_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.490e-13
Identity = 69/81 (85.19%), Postives = 69/81 (85.19%), Query Frame = 0 
Query:   71 MPGLGIRPSVESYSIGLTXXXXXXXXXXXXVLLREMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPNV 151
            MPGLGIRPSVESYSIGLT            VLLREMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPNV
Sbjct:    1 MPGLGIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPNV 81
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9321.20917.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KIA5_9PHAE1.750e-1548.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKL0_ECTSI2.490e-1571.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKL1_ECTSI2.490e-1385.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 152..186
e-value: 1.2E-7
score: 29.4
coord: 1..34
e-value: 2.1E-5
score: 22.4
coord: 117..151
e-value: 3.0E-5
score: 21.9
coord: 187..221
e-value: 1.2E-6
score: 26.3
coord: 83..111
e-value: 3.6E-4
score: 18.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 184..231
e-value: 3.2E-11
score: 43.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 1..30
e-value: 9.3E-4
score: 19.3
coord: 259..272
e-value: 0.98
score: 9.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 102..163
e-value: 5.8E-12
score: 45.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 257..272
score: 6.785
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 185..219
score: 11.542
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 79..113
score: 8.912
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 220..256
score: 9.208
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 36..72
score: 5.086
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 115..149
score: 11.367
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 150..184
score: 11.016
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..32
score: 9.712
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..60
e-value: 1.8E-10
score: 42.4
coord: 68..159
e-value: 1.2E-24
score: 88.7
coord: 160..272
e-value: 1.1E-32
score: 114.9
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 71..168
coord: 1..56
coord: 138..272

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9321contigEcto-sp13_S_contig9321:3..5174 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9321.20917.1mRNA_Ecto-sp13_S_contig9321.20917.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9321 3..5174 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9321.20917.1 ID=prot_Ecto-sp13_S_contig9321.20917.1|Name=mRNA_Ecto-sp13_S_contig9321.20917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=272bp
VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVPDRISFDCLMKACGNG
GDWEQALVGRAPSSSVRRVRMPGLGIRPSVESYSIGLTACAKGGRWQEAL
VLLREMEEDDEIKLDVVAYSAAITACANGGRWQEAVAILSDMPNVGVRPN
VISCNAAIKACGEAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAG
QSEQASELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMS
LAGVTPDSVTYNSLIVACGKGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf