mRNA_Ecto-sp13_S_contig93102.20904.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig93102.20904.1
Unique NamemRNA_Ecto-sp13_S_contig93102.20904.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig93102.20904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig93102contigEcto-sp13_S_contig93102:235..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size269
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size129
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464200.6475368-UTR-Ecto-sp13_S_contig93102:234..3521681464200.6475368-UTR-Ecto-sp13_S_contig93102:234..352Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig93102 235..352 +
1681464200.6744573-UTR-Ecto-sp13_S_contig93102:481..5031681464200.6744573-UTR-Ecto-sp13_S_contig93102:481..503Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig93102 482..503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464200.6614656-CDS-Ecto-sp13_S_contig93102:352..4811681464200.6614656-CDS-Ecto-sp13_S_contig93102:352..481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93102 353..481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig93102.20904.1prot_Ecto-sp13_S_contig93102.20904.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig93102 353..481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig93102.20904.1

>prot_Ecto-sp13_S_contig93102.20904.1 ID=prot_Ecto-sp13_S_contig93102.20904.1|Name=mRNA_Ecto-sp13_S_contig93102.20904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
MTPSSCDSERCRMQQHNVCTRGLSVCILISSVLSTCSTTSSE*
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mRNA from alignment at Ecto-sp13_S_contig93102:235..503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig93102.20904.1 ID=mRNA_Ecto-sp13_S_contig93102.20904.1|Name=mRNA_Ecto-sp13_S_contig93102.20904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=269bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93102:235..503+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCCATACCGCGGTCATCTTGCACATACATGTTTCCCCGCAAGGTTATT
CCGCCGCGTTTTCGGCGGGAACAAACACAAGTGTACGCGCGTATTTTATC
TGATCAGTGCCCCCGCGGATGACGCCTTCATCCTGTGACAGTGAGCGCTG
CAGGATGCAGCAACACAACGTTTGCACTCGGGGATTGTCTGTGTGCATCT
TAATCTCGTCTGTGCTCTCTACCTGCTCTACTACATCGAGTGAGTAGGCC
ATCGCTGTTCCGCGTTGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig93102:235..503+

>mRNA_Ecto-sp13_S_contig93102.20904.1 ID=mRNA_Ecto-sp13_S_contig93102.20904.1|Name=mRNA_Ecto-sp13_S_contig93102.20904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93102:235..503+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCCTTCATCCTGTGACAGTGAGCGCTGCAGGATGCAGCAACACAA
CGTTTGCACTCGGGGATTGTCTGTGTGCATCTTAATCTCGTCTGTGCTCT
CTACCTGCTCTACTACATCGAGTGAGTAG
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