mRNA_Ecto-sp13_S_contig931.20902.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig931.20902.1
Unique NamemRNA_Ecto-sp13_S_contig931.20902.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig931.20902.1 vs. uniprot
Match: D8LQN6_ECTSI (2-oxoisovalerate dehydrogenase subunit alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQN6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 5.200e-10
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = -2 
Query:  273 YSYLEGKGWWDSAKDRVLRDRERRSVLIV 359
            YSYLEGKGWWDSAKDRVLRDRERRSVLI 
Sbjct:  368 YSYLEGKGWWDSAKDRVLRDRERRSVLIA 396
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig931.20902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQN6_ECTSI5.200e-1096.552-oxoisovalerate dehydrogenase subunit alpha n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig931contigEcto-sp13_S_contig931:2774..3133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size360
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464200.5418441-UTR-Ecto-sp13_S_contig931:2773..28001681464200.5418441-UTR-Ecto-sp13_S_contig931:2773..2800Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig931 2774..2800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464200.5541875-CDS-Ecto-sp13_S_contig931:2800..31331681464200.5541875-CDS-Ecto-sp13_S_contig931:2800..3133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig931 2801..3133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig931.20902.1prot_Ecto-sp13_S_contig931.20902.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig931 2801..3133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig931.20902.1

>prot_Ecto-sp13_S_contig931.20902.1 ID=prot_Ecto-sp13_S_contig931.20902.1|Name=mRNA_Ecto-sp13_S_contig931.20902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MEPTGKFKVQEARTRRPRTCVGRVEHMWRKTGVASRRPKDRPDNRQDTPR
SCKDAAKTWGADYCGHANVCVAHVENSQVGELTISTDRLSLSLRTRSFAE
SHQPLPSKYE*
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mRNA from alignment at Ecto-sp13_S_contig931:2774..3133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig931.20902.1 ID=mRNA_Ecto-sp13_S_contig931.20902.1|Name=mRNA_Ecto-sp13_S_contig931.20902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig931:2774..3133+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGACCTTCCGCACAGACGCAACAGATGGAGCCGACCGGCAAATTCAA
AGTGCAGGAAGCTCGCACCAGAAGGCCACGAACATGTGTAGGTAGGGTTG
AGCATATGTGGCGCAAGACCGGAGTTGCAAGCAGACGACCAAAGGACCGG
CCAGACAACCGCCAAGACACGCCACGGAGCTGCAAAGATGCGGCCAAAAC
TTGGGGTGCAGACTACTGTGGTCACGCCAACGTGTGCGTCGCTCACGTTG
AGAACTCACAAGTAGGAGAACTCACAATTAGCACCGACCGCCTTTCCCTG
TCCCTCAGGACTCGGTCTTTCGCGGAATCCCACCAGCCCTTACCCTCCAA
GTACGAATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig931:2774..3133+

>mRNA_Ecto-sp13_S_contig931.20902.1 ID=mRNA_Ecto-sp13_S_contig931.20902.1|Name=mRNA_Ecto-sp13_S_contig931.20902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig931:2774..3133+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCCGACCGGCAAATTCAAAGTGCAGGAAGCTCGCACCAGAAGGCC
ACGAACATGTGTAGGTAGGGTTGAGCATATGTGGCGCAAGACCGGAGTTG
CAAGCAGACGACCAAAGGACCGGCCAGACAACCGCCAAGACACGCCACGG
AGCTGCAAAGATGCGGCCAAAACTTGGGGTGCAGACTACTGTGGTCACGC
CAACGTGTGCGTCGCTCACGTTGAGAACTCACAAGTAGGAGAACTCACAA
TTAGCACCGACCGCCTTTCCCTGTCCCTCAGGACTCGGTCTTTCGCGGAA
TCCCACCAGCCCTTACCCTCCAAGTACGAATAA
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