mRNA_Ecto-sp13_S_contig12510.2090.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12510.2090.1
Unique NamemRNA_Ecto-sp13_S_contig12510.2090.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12510.2090.1 vs. uniprot
Match: A0A6H5K2H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H3_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.110e-14
Identity = 67/92 (72.83%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:  109 PLFLKRNVRRVEGLKPLARFPRNDDDDIDNGPGKNRNAKRAGGXXXXXXXXXXXXXXXXXXGGGGGGGC-----RSGAQFAALPSTVASPPT 369
            PLFLKRNVRRVEGLKP ARFPRNDDD     P K R A+RAGG  XXXXXXXXXXXXXXXX  GG GGC     R GA   ALPSTVAS PT
Sbjct:  634 PLFLKRNVRRVEGLKPPARFPRNDDDXXXXXPRKKRTARRAGGGLXXXXXXXXXXXXXXXXXVGGVGGCSDGGRRPGAHSTALPSTVASAPT 725
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12510.2090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2H3_9PHAE4.110e-1472.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12510contigEcto-sp13_S_contig12510:467..887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size422
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.596395-CDS-Ecto-sp13_S_contig12510:466..8861681462667.596395-CDS-Ecto-sp13_S_contig12510:466..886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12510 467..886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12510.2090.1prot_Ecto-sp13_S_contig12510.2090.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12510 467..886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12510.2090.1

>prot_Ecto-sp13_S_contig12510.2090.1 ID=prot_Ecto-sp13_S_contig12510.2090.1|Name=mRNA_Ecto-sp13_S_contig12510.2090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
RGKGSANGNAPAVVTAAAAGDDGEKKKNAAADTGGPPLFLKRNVRRVEGL
KPLARFPRNDDDDIDNGPGKNRNAKRAGGGLKPLAWRPRNDIDDNDNGGG
GGGGCRSGAQFAALPSTVASPPTSTVADAAAATAAAAAAA
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mRNA from alignment at Ecto-sp13_S_contig12510:467..887+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12510.2090.1 ID=mRNA_Ecto-sp13_S_contig12510.2090.1|Name=mRNA_Ecto-sp13_S_contig12510.2090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=421bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12510:467..887+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGGAAAGGGAAGCGCGAACGGGAACGCGCCGGCGGTGGTGACCGCCGC
GGCTGCCGGCGACGACGGGGAGAAGAAGAAGAACGCGGCGGCGGACACCG
GCGGGCCTCCGCTGTTCCTGAAGAGAAATGTGAGGCGGGTGGAAGGACTC
AAGCCGCTGGCACGGTTTCCCCGGAACGATGATGATGACATTGACAACGG
CCCTGGAAAGAACAGAAACGCGAAGCGAGCGGGAGGAGGACTCAAGCCGC
TGGCATGGCGTCCCCGGAACGATATTGATGACAACGACAACGGCGGTGGC
GGTGGTGGTGGGTGTCGATCTGGGGCCCAGTTTGCCGCCCTGCCTTCCAC
TGTTGCTTCCCCACCGACCTCAACCGTTGCCGATGCCGCCGCCGCCACAG
CAGCAGCAGCAGCAGCAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12510:467..887+

>mRNA_Ecto-sp13_S_contig12510.2090.1 ID=mRNA_Ecto-sp13_S_contig12510.2090.1|Name=mRNA_Ecto-sp13_S_contig12510.2090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12510:467..887+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGGAAAGGGAAGCGCGAACGGGAACGCGCCGGCGGTGGTGACCGCCGC
GGCTGCCGGCGACGACGGGGAGAAGAAGAAGAACGCGGCGGCGGACACCG
GCGGGCCTCCGCTGTTCCTGAAGAGAAATGTGAGGCGGGTGGAAGGACTC
AAGCCGCTGGCACGGTTTCCCCGGAACGATGATGATGACATTGACAACGG
CCCTGGAAAGAACAGAAACGCGAAGCGAGCGGGAGGAGGACTCAAGCCGC
TGGCATGGCGTCCCCGGAACGATATTGATGACAACGACAACGGCGGTGGC
GGTGGTGGTGGGTGTCGATCTGGGGCCCAGTTTGCCGCCCTGCCTTCCAC
TGTTGCTTCCCCACCGACCTCAACCGTTGCCGATGCCGCCGCCGCCACAG
CAGCAGCAGCAGCAGCAGCA
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