mRNA_Ecto-sp13_S_contig93.20885.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig93.20885.1
Unique NamemRNA_Ecto-sp13_S_contig93.20885.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig93.20885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig93contigEcto-sp13_S_contig93:3832..4463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size245
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.9399624-CDS-Ecto-sp13_S_contig93:3831..39171681464198.9399624-CDS-Ecto-sp13_S_contig93:3831..3917Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 3832..3917 +
1681464198.9507737-CDS-Ecto-sp13_S_contig93:4306..44631681464198.9507737-CDS-Ecto-sp13_S_contig93:4306..4463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93 4307..4463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig93.20885.1prot_Ecto-sp13_S_contig93.20885.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig93 3832..4463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig93.20885.1

>prot_Ecto-sp13_S_contig93.20885.1 ID=prot_Ecto-sp13_S_contig93.20885.1|Name=mRNA_Ecto-sp13_S_contig93.20885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
PSSATRGCHQTATTNARSTRPRGALVSSRQSIVPGKPSAPRMGAKRGSRP
QSAGLLYFRAHLQRHSKSGDNPWRGETLVRG
back to top

mRNA from alignment at Ecto-sp13_S_contig93:3832..4463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig93.20885.1 ID=mRNA_Ecto-sp13_S_contig93.20885.1|Name=mRNA_Ecto-sp13_S_contig93.20885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=632bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93:3832..4463+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAAGCTCTGCAACGAGAGGGTGTCATCAAACTGCGACGACAAATGCGAG
GTCAACTCGACCTCGCGGTGCTTTAGTATCCTCGAGGTGGGCCAGGCGTC
GTTGTACTGCGCGGCGCATCAAAAACACCGTGCGACAGGCTTCTTGCGTT
AGATGTGCCACAAATTTCATGCCATGCTTCATTAGTGTATGGTAGATATT
TTCCCACGTAGGGGGCACTAGCCAGCACAACACACCTTTAATCGCGACGC
CCTGAGTGGACGCCGGCAAACAATCAGCGCTTGAACATGTCCATCATATT
CTCTACCGTACCTTACCCTTCCCGCCCATTTATGACCCATGGGCCTTTAC
CAAGCCGGGCGTGAAACGGTACCGACAAACTGTAGACCACTGTGTACGCA
CTGTTGGACCGATATCGGCTTCAACGCCGTGATTCTTGCGTCTTCGCCGT
CCCCTGTGGATGCCGTTCTCCACAGGCAAAGCATCGTCCCTGGCAAACCG
TCGGCGCCTCGAATGGGCGCAAAGCGCGGGTCAAGGCCACAGTCGGCCGG
TCTGTTGTACTTTCGAGCACACCTACAACGACACAGCAAGAGCGGTGACA
ATCCGTGGCGCGGTGAAACGCTGGTGAGAGGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig93:3832..4463+

>mRNA_Ecto-sp13_S_contig93.20885.1 ID=mRNA_Ecto-sp13_S_contig93.20885.1|Name=mRNA_Ecto-sp13_S_contig93.20885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93:3832..4463+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAAGCTCTGCAACGAGAGGGTGTCATCAAACTGCGACGACAAATGCGAG
GTCAACTCGACCTCGCGGTGCTTTAGTATCCTCGAGGCAAAGCATCGTCC
CTGGCAAACCGTCGGCGCCTCGAATGGGCGCAAAGCGCGGGTCAAGGCCA
CAGTCGGCCGGTCTGTTGTACTTTCGAGCACACCTACAACGACACAGCAA
GAGCGGTGACAATCCGTGGCGCGGTGAAACGCTGGTGAGAGGA
back to top