mRNA_Ecto-sp13_S_contig9270.20861.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9270.20861.1
Unique NamemRNA_Ecto-sp13_S_contig9270.20861.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9270.20861.1 vs. uniprot
Match: A0A6H5L6K6_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K6_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 1.870e-76
Identity = 238/365 (65.21%), Postives = 244/365 (66.85%), Query Frame = 1 
Query:  211 GSGGGGSVVSGFGXXXXXXXXXXXXXXXXVKADGVXXXXXTSGGGVGGRDGGVEKDCNDGAPVSPAAATEAKAKREDYSGSXXXXXXXXXXXXXXXXXDGDHERSDVLGDLRGEEDNSAXXXXXXXXXXXDNDYEDKDEXKXDNDESSDVLGDLRRREDAKDAKQKNNXXXXXXXXS--TPPSPLSVLEKDKSEVFVPAPQAPSLSTQYSPFSVDDXXXXXXXXXGYERKKADRAPETAGAGGANNSGDEGGFSSVNPMFRGVAGPREGDGNISSSSGSLSXXXXXXXXXVAGVDLLPGTGAGXXXXXXXXXXSASRFFDHDVGRTVMMGDGSPLTSEEVASALAAATAAVLPKGGKQEEVTATV 1299
            GSGGGGSVVSGFG    XXXXXXXXXXXX      XXXXX     V G+DG V+K C+DGA VSPAAATE KAKREDYSGS XXXXXXXXXXXX    DGDHE SDVLGD R       XXXXX      D D EDKD X X                 AKDAKQKNN        S  T PSPLSVLEKDK EVFVPA QAPSLSTQYSPFSVD           YE+K+AD APETAGAGGANNSGDEGGF SVNPM RG AGPRE             XXXXXXXXXVAGVDLLP               SASRFFD +VGRTVM GDGSPLTSEEVASALAAATAAVLPKG KQ EVTATV
Sbjct: 1399 GSGGGGSVVSGFGVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXSVFGQDGEVDKYCSDGASVSPAAATEEKAKREDYSGSGXXXXXXXXXXXXGEDDDGDHESSDVLGDRRXXX-XXXXXXXXEQKKDGDKDGEDKDXXXXXXXXXXXXXXXXXXXXXAKDAKQKNNKRGGRSSSSLTTTPSPLSVLEKDKGEVFVPASQAPSLSTQYSPFSVDGDDDDEDGDDVYEQKEADCAPETAGAGGANNSGDEGGFRSVNPMLRGGAGPREXXXXXXXXXXXXXXXXXXXXXXVAGVDLLPAA------------CSASRFFDQNVGRTVMRGDGSPLTSEEVASALAAATAAVLPKGRKQREVTATV 1750
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9270.20861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6K6_9PHAE1.870e-7665.21Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9270contigEcto-sp13_S_contig9270:2938..4246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1310
Hectar predicted targeting categoryother localisation
Exons1
Cds size1308
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464197.7798135-CDS-Ecto-sp13_S_contig9270:2937..42451681464197.7798135-CDS-Ecto-sp13_S_contig9270:2937..4245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9270 2938..4245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9270.20861.1prot_Ecto-sp13_S_contig9270.20861.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9270 2938..4245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9270.20861.1

>prot_Ecto-sp13_S_contig9270.20861.1 ID=prot_Ecto-sp13_S_contig9270.20861.1|Name=mRNA_Ecto-sp13_S_contig9270.20861.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=436bp
FFAIGFGSGGGKTDGAGGGNSFFGKGFVSSGAKADGAGGGGGFFGNGFSN
SGVKADFGTSGSSGFFANGLGSGGGGSVVSGFGGASADNGFFANGFGNGV
KADGVSGVSGTSGGGVGGRDGGVEKDCNDGAPVSPAAATEAKAKREDYSG
SGATEEKGKEKDDNGGGGDGDHERSDVLGDLRGEEDNSAAAAAAEQKKDE
DNDYEDKDEDKDDNDESSDVLGDLRRREDAKDAKQKNNKRGGRSSSSTPP
SPLSVLEKDKSEVFVPAPQAPSLSTQYSPFSVDDDEEEENGDDGYERKKA
DRAPETAGAGGANNSGDEGGFSSVNPMFRGVAGPREGDGNISSSSGSLSS
SGSLSSSGVAGVDLLPGTGAGGGAAAAAAAGSASRFFDHDVGRTVMMGDG
SPLTSEEVASALAAATAAVLPKGGKQEEVTATVAEA
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mRNA from alignment at Ecto-sp13_S_contig9270:2938..4246+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9270.20861.1 ID=mRNA_Ecto-sp13_S_contig9270.20861.1|Name=mRNA_Ecto-sp13_S_contig9270.20861.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9270:2938..4246+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTTTGCCATCGGCTTCGGTAGCGGCGGCGGTAAGACTGACGGCGCTGG
CGGGGGTAACAGCTTCTTTGGCAAAGGCTTCGTCAGCAGCGGCGCTAAGG
CTGACGGCGCTGGCGGCGGTGGCGGCTTCTTTGGCAACGGCTTCAGCAAC
AGCGGTGTAAAGGCTGACTTCGGCACCAGCGGGAGTAGCGGCTTCTTTGC
TAACGGACTCGGCAGCGGCGGCGGCGGCAGCGTCGTTAGCGGGTTTGGGG
GCGCCAGCGCCGACAACGGCTTCTTTGCGAACGGCTTCGGCAACGGCGTC
AAGGCTGACGGCGTCAGCGGCGTTAGCGGCACTAGTGGTGGCGGCGTGGG
CGGTCGGGACGGGGGGGTAGAGAAAGATTGCAACGACGGTGCCCCCGTCT
CCCCCGCTGCCGCCACCGAGGCGAAGGCAAAGCGAGAGGACTACAGCGGC
AGCGGCGCAACCGAGGAGAAGGGCAAGGAGAAGGATGACAACGGCGGGGG
CGGCGACGGTGATCACGAGAGATCTGACGTGCTCGGAGACCTGCGTGGCG
AAGAAGACAACTCCGCCGCCGCCGCCGCCGCTGAGCAGAAGAAGGATGAG
GACAACGATTACGAAGACAAAGACGAAGACAAAGACGATAATGACGAAAG
CTCCGATGTGCTCGGAGACCTACGTCGGCGCGAGGACGCGAAGGACGCGA
AGCAGAAGAACAACAAGCGCGGCGGCCGATCGTCGTCGTCGACGCCTCCG
TCGCCGCTCTCCGTCCTGGAGAAAGACAAGAGCGAGGTATTCGTCCCCGC
CCCTCAGGCTCCGTCCCTGTCGACCCAATACTCCCCGTTCAGCGTCGACG
ACGACGAGGAGGAGGAGAACGGGGACGACGGCTACGAAAGAAAGAAGGCG
GACCGCGCCCCCGAGACAGCGGGGGCGGGCGGCGCCAACAATAGCGGCGA
CGAGGGGGGGTTCAGCAGTGTCAACCCCATGTTTAGGGGGGTTGCTGGTC
CTCGGGAAGGAGACGGCAACATCAGCAGCAGCAGCGGCAGCCTCAGCAGC
AGCGGCAGCCTTAGCAGCAGCGGCGTCGCCGGCGTCGATCTGCTCCCCGG
CACAGGTGCAGGCGGCGGTGCCGCCGCCGCCGCCGCCGCCGGTAGCGCTA
GCCGCTTCTTCGACCACGACGTCGGCAGGACCGTGATGATGGGCGACGGA
AGCCCGCTCACGTCGGAGGAGGTCGCCTCCGCGCTGGCAGCAGCGACGGC
GGCCGTGCTGCCGAAGGGGGGGAAGCAGGAGGAGGTCACGGCGACGGTGG
CCGAAGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9270:2938..4246+

>mRNA_Ecto-sp13_S_contig9270.20861.1 ID=mRNA_Ecto-sp13_S_contig9270.20861.1|Name=mRNA_Ecto-sp13_S_contig9270.20861.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1308bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9270:2938..4246+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTTTGCCATCGGCTTCGGTAGCGGCGGCGGTAAGACTGACGGCGCTGG
CGGGGGTAACAGCTTCTTTGGCAAAGGCTTCGTCAGCAGCGGCGCTAAGG
CTGACGGCGCTGGCGGCGGTGGCGGCTTCTTTGGCAACGGCTTCAGCAAC
AGCGGTGTAAAGGCTGACTTCGGCACCAGCGGGAGTAGCGGCTTCTTTGC
TAACGGACTCGGCAGCGGCGGCGGCGGCAGCGTCGTTAGCGGGTTTGGGG
GCGCCAGCGCCGACAACGGCTTCTTTGCGAACGGCTTCGGCAACGGCGTC
AAGGCTGACGGCGTCAGCGGCGTTAGCGGCACTAGTGGTGGCGGCGTGGG
CGGTCGGGACGGGGGGGTAGAGAAAGATTGCAACGACGGTGCCCCCGTCT
CCCCCGCTGCCGCCACCGAGGCGAAGGCAAAGCGAGAGGACTACAGCGGC
AGCGGCGCAACCGAGGAGAAGGGCAAGGAGAAGGATGACAACGGCGGGGG
CGGCGACGGTGATCACGAGAGATCTGACGTGCTCGGAGACCTGCGTGGCG
AAGAAGACAACTCCGCCGCCGCCGCCGCCGCTGAGCAGAAGAAGGATGAG
GACAACGATTACGAAGACAAAGACGAAGACAAAGACGATAATGACGAAAG
CTCCGATGTGCTCGGAGACCTACGTCGGCGCGAGGACGCGAAGGACGCGA
AGCAGAAGAACAACAAGCGCGGCGGCCGATCGTCGTCGTCGACGCCTCCG
TCGCCGCTCTCCGTCCTGGAGAAAGACAAGAGCGAGGTATTCGTCCCCGC
CCCTCAGGCTCCGTCCCTGTCGACCCAATACTCCCCGTTCAGCGTCGACG
ACGACGAGGAGGAGGAGAACGGGGACGACGGCTACGAAAGAAAGAAGGCG
GACCGCGCCCCCGAGACAGCGGGGGCGGGCGGCGCCAACAATAGCGGCGA
CGAGGGGGGGTTCAGCAGTGTCAACCCCATGTTTAGGGGGGTTGCTGGTC
CTCGGGAAGGAGACGGCAACATCAGCAGCAGCAGCGGCAGCCTCAGCAGC
AGCGGCAGCCTTAGCAGCAGCGGCGTCGCCGGCGTCGATCTGCTCCCCGG
CACAGGTGCAGGCGGCGGTGCCGCCGCCGCCGCCGCCGCCGGTAGCGCTA
GCCGCTTCTTCGACCACGACGTCGGCAGGACCGTGATGATGGGCGACGGA
AGCCCGCTCACGTCGGAGGAGGTCGCCTCCGCGCTGGCAGCAGCGACGGC
GGCCGTGCTGCCGAAGGGGGGGAAGCAGGAGGAGGTCACGGCGACGGTGG
CCGAAGCC
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