mRNA_Ecto-sp13_S_contig10183.209.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10183.209.1
Unique NamemRNA_Ecto-sp13_S_contig10183.209.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10183.209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10183contigEcto-sp13_S_contig10183:2374..5359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size726
Hectar predicted targeting categorysignal peptide
Exons6
Cds size726
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10183.209.1prot_Ecto-sp13_S_contig10183.209.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10183 2374..5359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462513.3801339-CDS-Ecto-sp13_S_contig10183:2373..24491681462513.3801339-CDS-Ecto-sp13_S_contig10183:2373..2449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10183 2374..2449 +
1681462513.3931022-CDS-Ecto-sp13_S_contig10183:3034..31881681462513.3931022-CDS-Ecto-sp13_S_contig10183:3034..3188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10183 3035..3188 +
1681462513.405703-CDS-Ecto-sp13_S_contig10183:3688..38211681462513.405703-CDS-Ecto-sp13_S_contig10183:3688..3821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10183 3689..3821 +
1681462513.4155252-CDS-Ecto-sp13_S_contig10183:4436..45001681462513.4155252-CDS-Ecto-sp13_S_contig10183:4436..4500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10183 4437..4500 +
1681462513.425622-CDS-Ecto-sp13_S_contig10183:4766..49411681462513.425622-CDS-Ecto-sp13_S_contig10183:4766..4941Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10183 4767..4941 +
1681462513.4348607-CDS-Ecto-sp13_S_contig10183:5235..53591681462513.4348607-CDS-Ecto-sp13_S_contig10183:5235..5359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10183 5236..5359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10183.209.1

>prot_Ecto-sp13_S_contig10183.209.1 ID=prot_Ecto-sp13_S_contig10183.209.1|Name=mRNA_Ecto-sp13_S_contig10183.209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
VNVLFLVLSHTLCLLIQGPLLHRMEAVPAHVTLTVGGLLLSLRLTAKDED
ENSTAQLLLLVFFVMLSASDLWEAWFFFSSPGDGPVPSLAFLSVPFLIAG
ITSIVTARRNFPSNVRQDPKKTAAYEMLLTHGCCVFFPSASFWHAYPVPD
RAMAHWATCSAGLLVSAWLLAADRRNVPVGLPTVFCCVLVAMADAGAAFW
SVMAPPPTVYAPSPAILVVPYLAAAVACLGTASRVMRGAYR*
back to top

mRNA from alignment at Ecto-sp13_S_contig10183:2374..5359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10183.209.1 ID=mRNA_Ecto-sp13_S_contig10183.209.1|Name=mRNA_Ecto-sp13_S_contig10183.209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2986bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10183:2374..5359+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAACGTGCTGTTCCTAGTGTTGAGTCACACTCTGTGCTTGTTAATCCA
GGGCCCACTGCTTCACCGCATGGAAGGTACTGTTGTATCACCTGTACTCA
CATAGTATCATGATATTTGTAGGTATTCCATGCCTGTTGTTCAGAGTGCC
TGTGGCCCCGTTTGACCCAGGGTGTTGCATTCGCTTGTCGTCTCGTTGCG
ACATGATAGCACCCTGTGCTCGTGATTCGGGTTGAAAGGAGGCGAGACGC
CTCGGCGTGTCATCCGCTTGAAAGGAGGTACACACGGGGTCAGTGCACCG
TACAGATAACCGACGATCTCTAGCAAATGATATCAACCCGTCACCGGTGG
TGTTACGGTTTGTCCGAGGATACCAAAGCTGATACGGTGCGTGTTGTCCC
GAAAGGCGATTGCGGGAGTACTTCCGTTGGCACACGCCGGAACCATCCCT
CCTCTTGCTTGGTAGTCATTTTGCGGCCTCATTTCTTCATCCGTTGCTAG
CCTATTCTACTCCGCGCGAAAACAATCTTTGAGTGCCTCACCCCCTTGCC
AAAACCATCGCCCGCCAGCTATCCTTCCTCCGCGCGAAACCAACGAGTGT
AGCAGTTAGCACATGGTGACGGTTGTCGCCTACACTTCCTCTCCACACGC
GACTTGCTCAGCTGTGCCAGCGCACGTGACCTTGACGGTGGGAGGTCTTC
TTCTTTCCCTAAGACTCACGGCGAAGGATGAGGACGAGAACTCCACCGCT
CAATTGCTCTTATTGGTATTCTTCGTCATGTTGTCTGCTAGCGACCTGTG
GGAGGCGTGGTTTTTGTAAGTTTTCTTTCGCTTTTGGTTTGTTGGAAACA
CTCGCAAGACTTTCCTGTCGTCCATTTATATTTTTCTTTGTTTCTAGAGA
GGTGTGCTCCTTTTTGGGGTTGGTGGCTTGTGACCACGGAAGGCGTCCGC
GTCAGTTGAAACAGTACCGACAGTAGGAGGTACTGAGCGGAGACCAAGAC
GGTTTTTAATGTCAAGACAACAACAACAACAACAACAACTTGGTAGGTTT
GTTGGCGAAAGCGTCACCCCGTTCGACTGGCAAAAAGTTGTCCATCGTAT
GCAAAGTCGCCCGCGTCCACCCACCCTAGCTCTCTCCGCCACTTCAAAAA
TCCAAACAACCACGCCACCGTGCGAACGCGGTTTAAACATGTACCCTCTT
GATCGGTTCCACAGACGACGTACACTTCCCTCACCGCTGCCTCCTTCATG
GAACATGTGTACGGTGTATTCCGTGAGAGCGTCACACACCCCCTTCGCGC
GTATGTAACCGTCAGTTTCTCCTCGCCGGGGGACGGGCCCGTTCCGAGCC
TCGCATTCTTGAGCGTGCCCTTCTTGATTGCTGGGATCACCAGCATCGTC
ACGGCGAGAAGGAACTTTCCCTCCAACGTGCGGCAAGACCCGAAAAAAGT
GAGTGGGTCCGCGCATACATGATGCTGCAACGAGCACAACCGGCTGTTTT
TTCCTCGGGGGGGCGGGCGTTCGGCAAAGGCGCCGGCCTGGCGTTTGGGG
CTGAGGTCCTACAACCGTCAGGGTCTGGCCGCGCCGAAAGGGAAAGCGTC
AGCGACCGGCATAGTTGGCAGTGTTTCGTGTCGTGTTCTTAGCGGTAATT
TTGTTTTTTCGATCTGACAGCGGGTGGAGCTTCGCCCGCCAGGTTGTTGG
CAAGATACACGGCCGATCTTCGGGCTTGACACGGCACTCCACGAGGCGAG
GCAGTCTTCATCAACCTCTATAGTCGTGAAGCCTCGTCGCGGTACCGTAC
CGGCAGAGTATATCGCCTGTTCACGTACACCCCGTAAAGCGATGTGTCCC
TTACAAGAGAACTTAGCTTTTAGTATCGGCTTGGGTGATAATTTGGTGCA
TAAATCACGGTACGTTGGCATCACACACATGCGCTCACACACCTAACAGC
TTGTTCCGAACGGGTCCTCTGCTCTTATCCCAGCCTTTTGCGTCTGCCGC
CACCCCCGCGGTATCCCTTGCTCTCGCCCCACTCCCTCTCACGTTACCTC
CTTAATGCTGCAGACGGCCGCATACGAGATGCTGCTGACGCACGGCTGTT
GCGTTTTTTTCCCGTCGGCAAGCTTCTGTGAGTCCTATTTAGGTTGTTCA
TGCCCGCCGACTATGTATCGACTCCACCGTCGGCCCTGTTGCATGCCTCT
GCCTTGACCCTGTGGATAAAGGGACATCACTGCAGCGTGTACCGGTCGGG
GCGACTGCCCCTCCAAGTCCGGCAGCACTGTACGATGTACCATGGCATAA
AAACCGACTACGATGGTGATGCAGTTTTTGGTGGCATGGGTCATAGGCCA
TCTCACTCCTCACCCCATGCACCCGTCGGCTGCTACTATACAGGGCACGC
CTATCCCGTGCCGGATCGGGCAATGGCCCACTGGGCTACCTGCTCCGCAG
GGTTGCTTGTCTCGGCGTGGCTCCTCGCTGCTGATCGACGAAACGTTCCT
GTTGGCTTACCAACGGTGTTCTGCTGTGTACTCGTGGCTATGGCAGACGC
AGGGGCAGCGTTTTGGAGGTAAGTGTGGTTTGTCTGGAGGCTTGGCCGAG
CTGGTCCGTTCATGAATCATTGCCCACCACTCCCAAGAGCTAAGCTTGGA
CGGGTGTGCCGCGCAGTAAGCAACACCCGTCTGTTTTAACCAACAGCAGC
CAGGACCTGACTAGGTGTTGTTTCTGCGCTGGATTTTTTCTTCCTTTGCG
GTGCGTTCCTCCGTTTGACCGTGTCGCACGCGCCCCTCCAACTCACACCC
TCCCCCGCCACCCTCGGTTATGCTGTTTCTGTGTGGTTCCTGTGCGAATG
GCACATATGTAGTGTCATGGCACCACCGCCTACCGTGTATGCTCCGTCCC
CGGCAATACTTGTGGTCCCCTACTTAGCGGCGGCGGTCGCGTGCCTGGGA
ACGGCTTCTCGCGTGATGCGCGGTGCCTACCGATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10183:2374..5359+

>mRNA_Ecto-sp13_S_contig10183.209.1 ID=mRNA_Ecto-sp13_S_contig10183.209.1|Name=mRNA_Ecto-sp13_S_contig10183.209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10183:2374..5359+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAACGTGCTGTTCCTAGTGTTGAGTCACACTCTGTGCTTGTTAATCCA
GGGCCCACTGCTTCACCGCATGGAAGCTGTGCCAGCGCACGTGACCTTGA
CGGTGGGAGGTCTTCTTCTTTCCCTAAGACTCACGGCGAAGGATGAGGAC
GAGAACTCCACCGCTCAATTGCTCTTATTGGTATTCTTCGTCATGTTGTC
TGCTAGCGACCTGTGGGAGGCGTGGTTTTTTTTCTCCTCGCCGGGGGACG
GGCCCGTTCCGAGCCTCGCATTCTTGAGCGTGCCCTTCTTGATTGCTGGG
ATCACCAGCATCGTCACGGCGAGAAGGAACTTTCCCTCCAACGTGCGGCA
AGACCCGAAAAAAACGGCCGCATACGAGATGCTGCTGACGCACGGCTGTT
GCGTTTTTTTCCCGTCGGCAAGCTTCTGGCACGCCTATCCCGTGCCGGAT
CGGGCAATGGCCCACTGGGCTACCTGCTCCGCAGGGTTGCTTGTCTCGGC
GTGGCTCCTCGCTGCTGATCGACGAAACGTTCCTGTTGGCTTACCAACGG
TGTTCTGCTGTGTACTCGTGGCTATGGCAGACGCAGGGGCAGCGTTTTGG
AGTGTCATGGCACCACCGCCTACCGTGTATGCTCCGTCCCCGGCAATACT
TGTGGTCCCCTACTTAGCGGCGGCGGTCGCGTGCCTGGGAACGGCTTCTC
GCGTGATGCGCGGTGCCTACCGATAA
back to top