mRNA_Ecto-sp13_S_contig913.20696.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig913.20696.1
Unique NamemRNA_Ecto-sp13_S_contig913.20696.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig913.20696.1 vs. uniprot
Match: D7G8Y0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Y0_ECTSI)

HSP 1 Score: 402 bits (1034), Expect = 5.970e-131
Identity = 370/386 (95.85%), Postives = 371/386 (96.11%), Query Frame = 1 
Query:   22 GPGGAGGGRAPSRWDALKPDRERDRGYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLHDGGLGAHDRAVAHEKAIAAGGAXXXXXXXXXXXXXXXXXXXXXXRYGGTSEADIWDMPTTLPGDGGATKEPPKNTRAAGLRSADRERREENRKKDEAAAFERERLEFERERAKVLQGRDGGKANGGPAEFPDMGGGFLGGGIGXXXXXXXXXXXXXXXXXXXXXXXXGGSGSGSQDQPQQLGKNQSVLDRLFGAGAGAPAAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPGGGLFSFMAPGNSISTIDKFTEATRGKGNAKIFSPGTKPAATPWGKVDKKPAANVVNG 1179
            GPGGAGGGRAPSRWDALKPDRERDRGYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    DGLHDGGLGAHDRAVAHEKAIAAGGAXXXXXXXXXXXXXXXXXXXXXXRYGGTSEADIWDMPTTLPGDGGATKEPPKNTRAAGLRSADRERREENRKKDEAAAFERERLEFERERAKVLQGRDGGKANGGPAEFPDMGGGFLGGGIG XXXXXXXXXXXXXXXXXXXXXXX GSGSGSQDQPQ L KNQSVLDR+FGAGAGA      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPGGGLFSFMAPGNSISTIDKFTEATRGKGNAKIFSPGTKPAATPWGKVDKKP ANVVNG
Sbjct:  183 GPGGAGGGRAPSRWDALKPDRERDRGYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----DGLHDGGLGAHDRAVAHEKAIAAGGAXXXXXXXXXXXXXXXXXXXXXXRYGGTSEADIWDMPTTLPGDGGATKEPPKNTRAAGLRSADRERREENRKKDEAAAFERERLEFERERAKVLQGRDGGKANGGPAEFPDMGGGFLGGGIGDXXXXXXXXXXXXXXXXXXXXXXXXGSGSGSQDQPQ-LVKNQSVLDRVFGAGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPGGGLFSFMAPGNSISTIDKFTEATRGKGNAKIFSPGTKPAATPWGKVDKKPTANVVNG 563
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig913.20696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Y0_ECTSI5.970e-13195.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig913contigEcto-sp13_S_contig913:16093..20356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1494
Hectar predicted targeting categoryother localisation
Exons5
Cds size1494
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464184.8625956-CDS-Ecto-sp13_S_contig913:16092..165151681464184.8625956-CDS-Ecto-sp13_S_contig913:16092..16515Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig913 16093..16515 -
1681464184.8796854-CDS-Ecto-sp13_S_contig913:17366..177961681464184.8796854-CDS-Ecto-sp13_S_contig913:17366..17796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig913 17367..17796 -
1681464184.890319-CDS-Ecto-sp13_S_contig913:18207..183731681464184.890319-CDS-Ecto-sp13_S_contig913:18207..18373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig913 18208..18373 -
1681464184.9004583-CDS-Ecto-sp13_S_contig913:19137..194301681464184.9004583-CDS-Ecto-sp13_S_contig913:19137..19430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig913 19138..19430 -
1681464184.9094152-CDS-Ecto-sp13_S_contig913:20174..203561681464184.9094152-CDS-Ecto-sp13_S_contig913:20174..20356Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig913 20175..20356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig913.20696.1prot_Ecto-sp13_S_contig913.20696.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig913 16093..20356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig913.20696.1

>prot_Ecto-sp13_S_contig913.20696.1 ID=prot_Ecto-sp13_S_contig913.20696.1|Name=mRNA_Ecto-sp13_S_contig913.20696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=498bp
RRDRPRDGPGGAGGGRAPSRWDALKPDRERDRGYNNRNNRDDEDGGGRGG
VGQDARAGGGRDRDRRNGRDRDRDRDRDRDVGDRDRGGGGDGLHDGGLGA
HDRAVAHEKAIAAGGAGAAAAAAAAAGTNRDRAGAGRGRYGGTSEADIWD
MPTTLPGDGGATKEPPKNTRAAGLRSADRERREENRKKDEAAAFERERLE
FERERAKVLQGRDGGKANGGPAEFPDMGGGFLGGGIGDDNDDNGLLGGIE
DDQPPSPPPRKGGSGSGSQDQPQQLGKNQSVLDRLFGAGAGAPAAVDGGG
GSDSGGQKGGTGPAETGGGGGGGGAAAGGGGGGFPGGGLFSFMAPGNSIS
TIDKFTEATRGKGNAKIFSPGTKPAATPWGKVDKKPAANVVNGGGGGDGG
GGGGGGGGGGDAPPAAALTAAEKGALLKRMIMVGVVIVLLVAPPLSWLGY
PLCWVRVLLLMLLMSRVCVCVCVCVVFERVRFCSQRCSYSALSHGSF*
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mRNA from alignment at Ecto-sp13_S_contig913:16093..20356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig913.20696.1 ID=mRNA_Ecto-sp13_S_contig913.20696.1|Name=mRNA_Ecto-sp13_S_contig913.20696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig913:16093..20356- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGCGACAGGCCTAGAGATGGACCGGGCGGCGCAGGCGGGGGTCGTGC
CCCGTCCCGCTGGGATGCCCTCAAGCCCGACCGAGAGAGGGACAGGGGCT
ACAACAACCGCAACAACCGCGATGACGAAGACGGGGGCGGGAGGGGGGGG
GTAGGGCAGGATGCGCGGGCTGGCGGCGGAAGGTATGTGGTGGTACCGTT
ACCGTACCGTTGGTTGTGGTGGTTGTAGTGGCGGTCATGTTGAGCGGCGT
GCTGATATTAGCGGTAGGTTGAAAAAAGGGGGGTAGAGGATAGGAGGTAG
GACGCAAGGTTCGGTCGGTAGCGTTTTTACTCCTGTTCTGTGCGGATCGC
TGCTCAATCTGGAGGCATTGTGCTCTACCACAGACAGCAGTAGATATTCG
TTTCACCTCTCTGTTTTTGTTTGATCCGTCAGCCGGTCACCACCCTAAAG
TTTGTGGCGCCCTGATTGCGCCAGGAATACACGACATATCTACCCTTACG
CGTCTTTGCCCCTCGGTGGTTCCATCCCCTCCTAGGCCCTACATTGCATT
GTACTTCTCTACCAGGAAGTCTTTTTGGGGAGTCCCTTAGTTTTCTTTAT
AAGCAGTACAACGGTTTTGATCTCGTCGCGTATTATCCTCTTCCGTCCTC
ACGTTTGTTAATCTTTTCTCGTTCCGACACGGCGGCTCCATGTCACACGA
AGCGTGTTACGTTTCGCGTTCATGTCGTAGGTGTGACGCCGCATCATCAC
TCCCCCCCCCCGCCTCTATATCCCCGACATGCACTTCACGCACTCATCTC
ATGTCATCGCTCACTACTCCCTTCGTTATCATCCCTTGCCGTGTATGGCC
ACCGCATCCTCCTCCTTCTTACCCTCCCTACCGCACGCATCGGTTGCACA
ACAACGTGAACTATATATCGGGACAGAGACCGAGACAGGCGGAACGGCAG
AGACAGGGACAGGGACAGGGACAGGGACAGGGACGTAGGGGACAGGGATA
GGGGCGGCGGCGGCGACGGCCTCCATGACGGGGGGCTTGGGGCCCACGAC
CGGGCCGTAGCACACGAGAAGGCGATCGCTGCTGGCGGTGCCGGTGCTGC
TGCTGCCGCCGCCGCCGCCGCTGGTACCAACAGAGACAGGGCGGGGGCGG
GGAGGGGGCGGTACGGGGGGACTAGCGAGGCGGATATCTGGGACATGCCG
ACCACGCTGCCCGGTGACGGTGAGAGAGCGAGAGAGAGAGACACTTGTTT
TTGCGTACAATTTCTTGCTGCTGCTTTTGTTGCCTTGACGTTTTTTTTGC
TGCCGCTGTTGTGTGGTTGTCATGAATGGTGATGGTGGCGGTTTGCGGCG
TGTCAGTGTTGAGGAACATGACCGTTCTTGTGCCTGTGTGCTTGTCATGT
TGAGTCCCCGTCACCTCTTAGTTCTACTATTTTTAACCAGTCGTCTGTAC
GTGGATGTGTATGTGTATCGTAAATTTTCTGTGTAGCAGGTAGATTACGC
GGTCCGTGCATGTGCACGCGTTGTGACCGTTCTCAAGGAACCCAGGCCCC
CCGTGCAAATCCCTTGCCAACAACAAGCAAACGTATGGGCTTCCTCACAT
CTCATTACCATATGGGGAGGTACGTCGACAGCTTCGACCACAAGGTCAAG
AGGGCGTAAACGATGACAATGTTATTTATGTAAAAAAATTGTCTTACCCC
ATCACCAGGCAGAGGAAGACGCCCACTCTTCACAAGTTATGATTCGCGAC
AAATCTACTGCCACGCGCCCAACCCTAGCCAGGGATGAACAGAAAATCGT
CGTCTGCGGGGTCTGTGTGTGTTGGTCCTATCATCTGCACATTCACCTTC
GGTGTATAGGTACATGGTTGATGTGTCACCCGGGGTCATCCCGGAGGAAC
GTCGGACAGGATTATTTTGTCATGTTTTCCGTGCTCAATGTATATATGCA
TTGATGTCGCTTGCGTCGAAACTTGTCTGTCAGGGGGCGCAACGAAAGAG
CCGCCGAAGAACACAAGGGCCGCTGGCCTCCGCAGCGCGGACCGTGAGCG
TCGGGAGGAGAACCGCAAGAAGGACGAGGCGGCGGCGTTCGAACGGGAGA
GGCTGGAGTTCGAGAGGGAGAGGGCCAAGGTTCTGCAAGGACGCGATGGG
TAGGGAGAGTTGATGCTGTAGTGTCTGTCTGCCTGTCTGTCTGTCTGTCT
TGTCTGTTATCATTGTCGTCGTTATCCCTCTGGCTGTCTGTCTGTCTTTC
TGTCCATATTTTGTGGTTGCTGGTGATGTAGATTTTGTTGCTTATTGGTG
TTGCGTTGAGGGTTGAAACCCCCGGAGGCCATCCTTGCCGTACCTGTGTG
ACATCAATCATCAATCATCGATGCGCTCGCCGAAGAAGCGAGAAAAGCTT
GGGGTGGATAGGAGTAGCATACCCATGCGATTAACTCGTTCTTTTGTTCG
TTGCGTACGCGTCGACCGTTATCCTCTGTTGACTTGTAGAGTACGCCCGT
CTCACAGTCCCATCATACCCCCCCCCCCCGCCCCCCGTTGATGACGTCGA
ACTTGTGCAGGGGCAAAGCCAACGGGGGCCCCGCCGAATTCCCCGACATG
GGGGGTGGCTTCCTGGGCGGGGGCATCGGAGACGACAACGACGACAACGG
TCTTCTGGGCGGTATCGAAGACGACCAGCCTCCCTCCCCGCCCCCTCGCA
AGGGCGGTAGCGGTAGCGGCAGCCAGGACCAACCGCAACAACTTGGCAAG
AACCAGTCCGTGCTTGATAGGCTCTTCGGCGCCGGAGCCGGAGCTCCCGC
TGCCGTCGACGGCGGCGGTGGGAGTGATAGTGGGGGTCAGAAAGGAGGTA
CTGGCCCCGCGGAGACCGGGGGGGGGGGGGGTGGCGGGGGCGCCGCGGCT
GGAGGGGGGGGAGGGGGGTTCCCTGGGGGGGGTCTGTTCTCCTTCATGGC
CCCCGGGAACAGCATCTCCACGATCGACAAGTTTACGGAGGTGAGTGAGG
CAAAGGAGGCCAGGGTAAGGGGAGAGCGAGAGAGGACGTGGGGTCAGGCG
TTTTTTTGGTGACATGCACGTGGGTTGTGAGTCTGTATTGGAAGGTTCTG
TGAGATTCGTGGGCGTAGTAATGTTCGCGCTGCTTCTTGTGTTGTTGCTG
GTCTTGCGAGTCAATGCTGCCGTCATGTTGTCTTGTGTTTGCCTTCTGTG
TGTGGTAGCCAGCTCTGCCCCGTTTACTCATGTACGGCGAAGGTAACCCA
ACCAATCATTGCGATCAACCACCCTCCACCAACGCCTGTGTTAACCGTCG
TTGTCGCTTGGCTTCCTACATCGTGCCGTTCATGCTGTACATGCTTAACT
GGCTCTCTTAACCATGAGGTACAGTGGTTTCGCTTGATCGAGGGGCGGGG
GACGATACCTGTCGGTGGTGTGTGCGTGCCAGTCTATTGATCTTGTACAC
GGTACCCTACCTGCTCAAGGTGTTACACCCGTCCCCTCCCTTTTGTCGTC
AACAGTAGGCGAAACCCTGGGAACTAAATAGCTGTTTTCTTTTGAGAGGA
ACACATCCGCAGTCCTCCTCCGCAGTTCGATTTTGTATTTTTGGGCCGTC
GGCAGAGTGAATCTTTCATGTTACGAGAGAAAACCACCCCTGGAGGCAAA
ACCAAGGGTAGCACTGTACTCTACTCTGATGTGCGTACGAGATGATCTTG
TTTCGTTTTTGCTAGAAGAAGACACAAGACAGTACTGCCAGATACTCCCG
CCCTCCCGATTCGATTCATTTTTGCCCGACATCGTGTAGAGACGAAAAAA
CAAACAAACGCCTCCTCTGTGTACCGAAAATCCCACCGCAGGCAACGCGG
GGGAAAGGAAACGCCAAGATTTTCTCACCCGGCACCAAGCCCGCGGCAAC
TCCTTGGGGAAAAGTCGACAAGAAGCCTGCTGCCAACGTGGTTAACGGTG
GCGGTGGCGGTGATGGGGGTGGCGGGGGTGGTGGGGGTGGGGGGGGAGGG
GACGCGCCCCCGGCGGCGGCTTTGACGGCTGCCGAGAAGGGCGCTCTGCT
GAAGCGCATGATCATGGTGGGTGTCGTGATTGTCTTGTTGGTAGCCCCCC
CTCTTTCTTGGCTCGGCTATCCGTTGTGTTGGGTTCGAGTGTTGTTGCTG
ATGCTGCTCATGTCACGTGTATGTGTATGTGTATGTGTATGTGTGGTTTT
CGAAAGGGTGCGGTTTTGTTCCCAACGGTGTTCGTACAGTGCCCTTTCGC
ATGGTTCCTTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig913:16093..20356-

>mRNA_Ecto-sp13_S_contig913.20696.1 ID=mRNA_Ecto-sp13_S_contig913.20696.1|Name=mRNA_Ecto-sp13_S_contig913.20696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1494bp|location=Sequence derived from alignment at Ecto-sp13_S_contig913:16093..20356- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGCGACAGGCCTAGAGATGGACCGGGCGGCGCAGGCGGGGGTCGTGC
CCCGTCCCGCTGGGATGCCCTCAAGCCCGACCGAGAGAGGGACAGGGGCT
ACAACAACCGCAACAACCGCGATGACGAAGACGGGGGCGGGAGGGGGGGG
GTAGGGCAGGATGCGCGGGCTGGCGGCGGAAGAGACCGAGACAGGCGGAA
CGGCAGAGACAGGGACAGGGACAGGGACAGGGACAGGGACGTAGGGGACA
GGGATAGGGGCGGCGGCGGCGACGGCCTCCATGACGGGGGGCTTGGGGCC
CACGACCGGGCCGTAGCACACGAGAAGGCGATCGCTGCTGGCGGTGCCGG
TGCTGCTGCTGCCGCCGCCGCCGCCGCTGGTACCAACAGAGACAGGGCGG
GGGCGGGGAGGGGGCGGTACGGGGGGACTAGCGAGGCGGATATCTGGGAC
ATGCCGACCACGCTGCCCGGTGACGGGGGCGCAACGAAAGAGCCGCCGAA
GAACACAAGGGCCGCTGGCCTCCGCAGCGCGGACCGTGAGCGTCGGGAGG
AGAACCGCAAGAAGGACGAGGCGGCGGCGTTCGAACGGGAGAGGCTGGAG
TTCGAGAGGGAGAGGGCCAAGGTTCTGCAAGGACGCGATGGGGGCAAAGC
CAACGGGGGCCCCGCCGAATTCCCCGACATGGGGGGTGGCTTCCTGGGCG
GGGGCATCGGAGACGACAACGACGACAACGGTCTTCTGGGCGGTATCGAA
GACGACCAGCCTCCCTCCCCGCCCCCTCGCAAGGGCGGTAGCGGTAGCGG
CAGCCAGGACCAACCGCAACAACTTGGCAAGAACCAGTCCGTGCTTGATA
GGCTCTTCGGCGCCGGAGCCGGAGCTCCCGCTGCCGTCGACGGCGGCGGT
GGGAGTGATAGTGGGGGTCAGAAAGGAGGTACTGGCCCCGCGGAGACCGG
GGGGGGGGGGGGTGGCGGGGGCGCCGCGGCTGGAGGGGGGGGAGGGGGGT
TCCCTGGGGGGGGTCTGTTCTCCTTCATGGCCCCCGGGAACAGCATCTCC
ACGATCGACAAGTTTACGGAGGCAACGCGGGGGAAAGGAAACGCCAAGAT
TTTCTCACCCGGCACCAAGCCCGCGGCAACTCCTTGGGGAAAAGTCGACA
AGAAGCCTGCTGCCAACGTGGTTAACGGTGGCGGTGGCGGTGATGGGGGT
GGCGGGGGTGGTGGGGGTGGGGGGGGAGGGGACGCGCCCCCGGCGGCGGC
TTTGACGGCTGCCGAGAAGGGCGCTCTGCTGAAGCGCATGATCATGGTGG
GTGTCGTGATTGTCTTGTTGGTAGCCCCCCCTCTTTCTTGGCTCGGCTAT
CCGTTGTGTTGGGTTCGAGTGTTGTTGCTGATGCTGCTCATGTCACGTGT
ATGTGTATGTGTATGTGTATGTGTGGTTTTCGAAAGGGTGCGGTTTTGTT
CCCAACGGTGTTCGTACAGTGCCCTTTCGCATGGTTCCTTCTGA
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