mRNA_Ecto-sp13_S_contig1249.2067.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1249.2067.1 vs. uniprot
Match: D8LRD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD0_ECTSI) HSP 1 Score: 278 bits (710), Expect = 1.250e-87 Identity = 155/181 (85.64%), Postives = 158/181 (87.29%), Query Frame = 1
Query: 1 VLSAVAFKSQVVVRSLMAFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQMVVFYTVYNACLLAWSYWLYGKTMTTSLQQGRVRAWAGSFNTSRSSSCGRGRASSSSLERPRCPSWRSTCTSTTSRWGSSVWLRGRPS 543
VLSAVAFKSQV+VRSL+AFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQMVVFYTVYNACLLAWSYWLYGKTMTTSLQ G W S NT RSS G G SSSS RPRCPSWRS CTSTT + G S W RG PS
Sbjct: 38 VLSAVAFKSQVLVRSLVAFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQMVVFYTVYNACLLAWSYWLYGKTMTTSLQGGST-GWGSSTNTFRSSFWGGGPTSSSSPGRPRCPSWRSPCTSTTFQRGFSGWGRGPPS 217
BLAST of mRNA_Ecto-sp13_S_contig1249.2067.1 vs. uniprot
Match: A0A6H5JH19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH19_9PHAE) HSP 1 Score: 226 bits (577), Expect = 1.910e-64 Identity = 118/122 (96.72%), Postives = 122/122 (100.00%), Query Frame = 1
Query: 1 VLSAVAFKSQVVVRSLMAFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQMVVFYTVYNACLLAWSYWLYGKTMTTSLQ 366
VLSAVAFKSQVVVRSLMAF+LMSTVTALTVRTLLSSGVVI+FP+VMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGH+MQMVVFYTVYNACLLAWSYWLYGKTMTTSLQ
Sbjct: 402 VLSAVAFKSQVVVRSLMAFLLMSTVTALTVRTLLSSGVVIIFPVVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHVMQMVVFYTVYNACLLAWSYWLYGKTMTTSLQ 523
BLAST of mRNA_Ecto-sp13_S_contig1249.2067.1 vs. uniprot
Match: A0A7S3Y6C3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6C3_HETAK) HSP 1 Score: 125 bits (313), Expect = 1.070e-29 Identity = 63/117 (53.85%), Postives = 86/117 (73.50%), Query Frame = 1
Query: 16 AFKSQVVVRSLMAFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQMVVFYTVYNACLLAWSYWLYGKTMTTSLQ 366
A K ++ SL+AF LMS+VTAL VR L+SSGVV MFP+ LER GL+G + Q++L LSYPWLG P+E L+ R KP GPF+ GH++++VV+Y +Y A +AW+ WLYGK+ L+
Sbjct: 59 ALKPLALLSSLLAFFLMSSVTALIVRVLISSGVVFMFPLFSALERAGLRGFN-QRLLRLSYPWLGAPMEELQRRGKPTGPFVAGHLLKVVVYYALYEAAQVAWAQWLYGKSTPAGLE 174
BLAST of mRNA_Ecto-sp13_S_contig1249.2067.1 vs. uniprot
Match: A0A7S2AJJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AJJ9_9STRA) HSP 1 Score: 123 bits (308), Expect = 6.590e-29 Identity = 67/125 (53.60%), Postives = 89/125 (71.20%), Query Frame = 1
Query: 22 KSQVVVRSLMAFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQMVVFYTVYNACLLAWSYWLYGKTMTTSLQ---QGRVRAW 387
K+ VV+RSL+AF STVTAL VR L+SSGVVIMFP++ L +G +DMQ +L +SYPWLGLP+E LR +NKPV P I+ H++++VV Y++Y AC LAW WLY K + + L+ G V W
Sbjct: 54 KAIVVLRSLLAFFFTSTVTALIVRMLISSGVVIMFPLLTGLRYLGCSAIDMQ-ILNMSYPWLGLPVERLRAQNKPVTPLIVAHMVRVVVLYSMYEACQLAWGIWLYDKPLPSGLELWIYGIVMIW 177
BLAST of mRNA_Ecto-sp13_S_contig1249.2067.1 vs. uniprot
Match: A0A7S4DCY7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCY7_HETAK) HSP 1 Score: 125 bits (313), Expect = 1.740e-28 Identity = 63/117 (53.85%), Postives = 86/117 (73.50%), Query Frame = 1
Query: 16 AFKSQVVVRSLMAFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQMVVFYTVYNACLLAWSYWLYGKTMTTSLQ 366
A K ++ SL+AF LMS+VTAL VR L+SSGVV MFP+ LER GL+G + Q++L LSYPWLG P+E L+ R KP GPF+ GH++++VV+Y +Y A +AW+ WLYGK+ L+
Sbjct: 247 ALKPLALLSSLLAFFLMSSVTALIVRVLISSGVVFMFPLFSALERAGLRGFN-QRLLRLSYPWLGAPMEELQRRGKPTGPFVAGHLLKVVVYYALYEAAQVAWAQWLYGKSTPAGLE 362
BLAST of mRNA_Ecto-sp13_S_contig1249.2067.1 vs. uniprot
Match: A0A835YR56_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR56_9STRA) HSP 1 Score: 117 bits (293), Expect = 3.010e-27 Identity = 58/103 (56.31%), Postives = 78/103 (75.73%), Query Frame = 1
Query: 40 RSLMAFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQMVVFYTVYNACLLAWSYWLYGKT 348
R+L+ F ++S+VTAL VR LLSSGV MFP LL RMG +D ++LA SYPW+G P++ LR +NKP GPFIM H++Q+VV+YT+YNA +AW+ WLY K+
Sbjct: 15 RALLTFAVLSSVTALVVRMLLSSGVAAMFPFFALLRRMGFTDLD-DRVLAASYPWIGRPMQALRRQNKPTGPFIMAHLVQVVVYYTLYNAVQVAWTMWLYDKS 116
BLAST of mRNA_Ecto-sp13_S_contig1249.2067.1 vs. uniprot
Match: A0A7S2SN08_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SN08_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 4.480e-19 Identity = 48/109 (44.04%), Postives = 72/109 (66.06%), Query Frame = 1
Query: 43 SLMAFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQMVVFYTVYNACLLAWSYWLYGKTMTTSLQQ 369
S+++F L+S +TAL VR L++SGV I FP+ L +R+GL +Q+L+LSYPWLG IE L N+ P + H+ ++++YT+Y AC + WS+WLY K+M Q
Sbjct: 261 SILSFALVSQITALLVRVLVTSGVAITFPLFNLFQRLGLNQ-HRRQLLSLSYPWLGAQIELLHTSNQSSNPLVSAHLFNVLLYYTMYEACQIVWSFWLYNKSMPAGQMQ 368
BLAST of mRNA_Ecto-sp13_S_contig1249.2067.1 vs. uniprot
Match: A0A7S0XCD7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCD7_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 4.770e-19 Identity = 48/109 (44.04%), Postives = 79/109 (72.48%), Query Frame = 1
Query: 13 VAFKSQVVVRSLMAFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQMVVFYTVYNACLLAWSYWLY 339
+ F+ V+ S +F ++ST++AL VR L+SSGVV++FP+ +++R G+ + +++LSYPW+G+PIE LR+RN+ + PFI+ HI ++VV+Y +Y A LA+S W Y
Sbjct: 138 ITFRLMVLFVSFFSFFMLSTISALLVRILISSGVVLLFPLFWIVQRFTSHGISWR-IISLSYPWIGIPIEVLRSRNQSIEPFIIAHICRIVVYYVLYEAAQLAFSVWFY 245
BLAST of mRNA_Ecto-sp13_S_contig1249.2067.1 vs. uniprot
Match: A0A4D9D9V5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9V5_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.610e-14 Identity = 44/114 (38.60%), Postives = 75/114 (65.79%), Query Frame = 1
Query: 22 KSQVVVRSLMAFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQMVVFYTVYNACLLAWSYWLYGKTMTTSL 363
K +++SL AF +S TA+ VR L++SGV +M+P L R+G +G+ + +LA SY WLG+P++ L+ R KP+ PF++ H+ +++V Y++Y AC + + LY K+ + L
Sbjct: 228 KLSALLQSLSAFFFLSGTTAIVVRMLMTSGVALMYPCFFCLRRLGARGLSLG-VLARSYAWLGVPMQRLQARGKPLAPFLLAHLCKVLVLYSMYEACQVFFVETLYAKSGASGL 340
BLAST of mRNA_Ecto-sp13_S_contig1249.2067.1 vs. uniprot
Match: W7UBT1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBT1_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.650e-14 Identity = 44/114 (38.60%), Postives = 75/114 (65.79%), Query Frame = 1
Query: 22 KSQVVVRSLMAFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQMVVFYTVYNACLLAWSYWLYGKTMTTSL 363
K +++SL AF +S TA+ VR L++SGV +M+P L R+G +G+ + +LA SY WLG+P++ L+ R KP+ PF++ H+ +++V Y++Y AC + + LY K+ + L
Sbjct: 302 KLSALLQSLSAFFFLSGTTAIVVRMLMTSGVALMYPCFFCLRRLGARGLSLG-VLARSYAWLGVPMQRLQARGKPLAPFLLAHLCKVLVLYSMYEACQVFFVETLYAKSGASGL 414 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1249.2067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1249.2067.1 >prot_Ecto-sp13_S_contig1249.2067.1 ID=prot_Ecto-sp13_S_contig1249.2067.1|Name=mRNA_Ecto-sp13_S_contig1249.2067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=336bp VLSAVAFKSQVVVRSLMAFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERback to top mRNA from alignment at Ecto-sp13_S_contig1249:1..3087+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1249.2067.1 ID=mRNA_Ecto-sp13_S_contig1249.2067.1|Name=mRNA_Ecto-sp13_S_contig1249.2067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3087bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1249:1..3087+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1249:1..3087+ >mRNA_Ecto-sp13_S_contig1249.2067.1 ID=mRNA_Ecto-sp13_S_contig1249.2067.1|Name=mRNA_Ecto-sp13_S_contig1249.2067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1008bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1249:1..3087+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |