mRNA_Ecto-sp13_S_contig91.20655.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig91.20655.1
Unique NamemRNA_Ecto-sp13_S_contig91.20655.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig91.20655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig91contigEcto-sp13_S_contig91:18263..22157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1017
Hectar predicted targeting categorysignal peptide
Exons3
Cds size1017
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464181.864157-CDS-Ecto-sp13_S_contig91:18262..185131681464181.864157-CDS-Ecto-sp13_S_contig91:18262..18513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig91 18263..18513 -
1681464181.8836396-CDS-Ecto-sp13_S_contig91:19587..199231681464181.8836396-CDS-Ecto-sp13_S_contig91:19587..19923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig91 19588..19923 -
1681464181.8969865-CDS-Ecto-sp13_S_contig91:21727..221571681464181.8969865-CDS-Ecto-sp13_S_contig91:21727..22157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig91 21728..22157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig91.20655.1prot_Ecto-sp13_S_contig91.20655.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig91 18263..22157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig91.20655.1

>prot_Ecto-sp13_S_contig91.20655.1 ID=prot_Ecto-sp13_S_contig91.20655.1|Name=mRNA_Ecto-sp13_S_contig91.20655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=339bp
KAIVARFPFLLLVARLVVAKQAPVQEQMSIPEHLLQVGAPIPSFIGKATN
HNWQHMLAVAASSTTNTTVTNSSSTNQSSQESCFPATMEACFASVDCLLC
AASGPADCNEIDVVDCESYWDSLCCTYGTSDACMDNTLLVDLVACFGEFL
CRDGEVDEICRDGYVRDPDWGDDDGGGDDFLDSDIACLPEAVACSMSSEC
TECAAVLDLSSETTTSEGDCPPYNNTGCADFADAMCCLYGSSPTCREDEE
MNEYIDCLTSEYFACAADGLCDDDDDDDDDDVSNESDDDVSNESDDDVSN
NSDDDTSGASRGGNPFSLRQLLFCVVGLGFWARASCFD*
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mRNA from alignment at Ecto-sp13_S_contig91:18263..22157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig91.20655.1 ID=mRNA_Ecto-sp13_S_contig91.20655.1|Name=mRNA_Ecto-sp13_S_contig91.20655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3895bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91:18263..22157- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCCATCGTCGCACGCTTCCCTTTTCTGCTCCTTGTGGCGAGACTCGT
CGTCGCGAAGCAAGCTCCGGTGCAGGAGCAGATGTCGATCCCAGAACATC
TTCTCCAAGTGGGGGCGCCAATTCCCAGCTTTATCGGCAAGGCGACGAAC
CACAACTGGCAGCACATGCTCGCAGTTGCAGCCTCATCCACCACCAATAC
CACCGTCACAAATTCAAGTTCGACAAACCAATCGTCACAAGAATCATGCT
TTCCCGCAACCATGGAGGCTTGCTTTGCGAGCGTCGACTGTCTGTTATGT
GCGGCATCGGGCCCTGCTGACTGCAACGAGATTGATGTGGTGGACTGCGA
ATCGTACTGGGACTCGCTGTGCTGCACGTACGGAACCTCGGACGCCTGCA
TGGACAACACCCTACTCGTCGACTTGGTTGGTACGGCAGGCCATCCTCGC
GTAACGGCATCGGTCAACTGGTTTCTTTCCTGCACTGAAACACTGACACG
TCCCACGGTTGGAGTTGTCGGGGCTGGGAAGACCTCTGATTTTAAGTCAG
AATAGTTTTTTCGTAGAGAAGAGGGTGCAAAGGCTGCGTAGCTCACGTAG
GGCCCGCGTACCACGTAGGGCCCGCGTATCCGTAAGCGTGCTGTCCGTCT
TGAACGTGCTGTAGCTTCCGCGAACAAGAACGGTTGATGTCTTGCAAGGC
GCCATTGTCGAATCTTCAAGTAGCAAGATCACACCAGGTTTACAAACGCA
TACAAGTACACGCCAAACGTTTTGCTTGCGGTCTAGATCTTCGTGACCAG
ACTATCGTCAACGTATGCATATTTATAATACGAAAAAACAGCAGTATCGG
GCCGTCTGAAAACGACTGTTTTAAAAAAAGCACGGTTCAAACAGTTAAAA
CTCGCTGCACGTTGTGTTGTGTGCTGGTTCCCGGTAGACGACAATGGCGT
TTAACGGGGTGTGTCTCATTGTTGTACACGGCAGGCCGTCAACCGATCGA
TGGCTCTAGGGAAGGACCAGCCACCGCAAGACATTTGACCCTTTCGGAAA
TGTTTTTTGGGGTCAGACAAAATGCTCAGACAAAAAGAGGGTCCGATTCT
TTGGAATCTGTAGCCGGTAACGGATTTATTTGTATGAGGCTGCCACACTT
TTCACCCACGGCTCAGACAAAAACCCCTCACCAACCTCATTTTGTCTGAG
GCGTTTGTTCCTGTTCAGAAGGCTCAGATATTTGATATTTAAGCAGCAAC
AGAGTAGTAGCGTACCACAAAAGAAAGCACCGCATGGTACAGACGCGTCC
AAGCCTCATGCCACCACCACCGGACAGACACACTTTCTCCTCCTCCGATG
CGGGCGGTGTGCGTCTATGTGTAGATTCGTGGTGATCGCTGTGGAAGGAA
CCGACGGGAGGGTGGGATGAGACATGGTTCATAACCAGGTCAGGAGGACA
CCCATGCCATGAGCTGTAGCCCACTCGAACTGCTGGAAGGTGGCCCAAGA
GTTGCTTCGTGTTACTCTCTATCGGCGCCATCTCGTCTGTACAGCTGTTG
CGGTTTGGAATGCAGCTCAAAAAATCGCTGGGTGAAGGTGTTTGTTCTAG
GTTGAAGCTGCTGTTGCTGACCGCCGCCTCTCTCTTTCGGTTGATAGAAG
CAGGACACCACCTGAGCGGCTGAGAGTTTGCTTGCTAGAAGCCTTGACAG
GATGTTTCTCTGCGGTAACAACACCCCCGCTACATGCTCCTGGCACCTTG
GATGATGAATGGCACCACGCAAGCAAGCAGACCTATTTTTTTGCTTGGGG
AGAAGAAGAGCGTGGGGAACGGCGCGCGTGAGTCTTTAGGCCAATCAGCG
GCGGGCCGTTGCCACGTCATGCCGACAAAATATCTGAGCCTCTTTTCGGA
TCTTTTTCACGCCAATTTTTGTCCGGGCAATTTTGTGTGGGCATTTTGTC
TGGGCAAAACCACACATATATCCGAAACTCCCCAATATCGTAAGGCCACC
GAATATCTTATCGGCATCCATTTGGCACCCTCTTCGTCACCAGAAGTATT
GTTACGTTGAGAGAATTCATGCACACTTCGTCCGCTGCGGCCATCTTTTG
CATCCCCTGCACGCATGTTCATGTTTCGGCCTGAATGGCCAAGGCTTCCA
TTCTGAAACTTTCCAGTGGCGCTATCGTTTCACTGCTGCTGCTACGGTAC
AACCGCCGTGGTATCTCTTTCCCTTGCCCATTAGCTTGTTTCGGGGAATT
CCTCTGCCGGGACGGCGAAGTGGATGAAATCTGCCGCGACGGATACGTCA
GAGACCCGGACTGGGGTGATGATGACGGCGGCGGCGACGATTTTCTCGAC
TCCGACATTGCGTGTTTGCCAGAAGCGGTGGCTTGCTCCATGTCGTCCGA
GTGCACGGAGTGCGCCGCCGTTCTTGATCTCAGCTCAGAAACCACCACCT
CCGAGGGGGATTGCCCTCCGTACAACAACACCGGCTGCGCAGATTTTGCG
GATGCGATGTGCTGCCTGTACGGAAGCTCGCCCACTTGCCGTGAAGATGA
GGAGATGAACGAATACATCGGTGAGCGCGCCCGAGCTTACGTTGCCGATT
TCGTTGTTGTTGTTGTGGTGGTTGTCGTCGTCGTTGCTGCTGCTCCTGTA
ACGGTCTCGTAGAGGAAGTACCTCTCTGCAAGCTTAACAACATTCAGTCT
AAACAAGCTGATCGTTTCATCCCTCCGAAACCGTGAGACGAGCGTTACGG
GATTTTCCCCGACCTGGTTGATGGTACAAAATCTTAGAACCTACGTACGA
TGCACTACTACAGTGGTAGTTCGCTGTTTACGGGGAAGCTCCCCCGCCAT
GCCCGGGAGATATCTCCTTGTCTTGTTCACCCCAACGAGGTAACCCCCGT
ACACGTAGATGTCAGGATGGGAGTAAACGACCGCGCGATGCTGACGACTC
GCATGCTTCTACTGTCCAAAGTTACGTACACCTCCCAACAAAGAAAAGTA
AAACGGATGGAGGTTCGACAACTTTCAACTCGAAATGAACGATACTTCAG
CTTTCCATCTTAGTTTAGCCACGTTTTTAAAGTTCGCTTTCGACGAAGGC
CGTGGTCCTCGATATCTGCTACTGTATAGGCACCCGAACATTCCTTCGAT
CAAATTTCTCTTCAGCTCTGTGGTACCTCGGCCCTGTCTGCGTGTAATCG
CTAAAAGTATCGTCTTGATTCCGCTGGCCTCCTAATGGACACGATTGGAT
GTTGCGGCATGTATGTGATTTGGCATCGTGAGGAGAAACTTGTTTTCGTT
CCATGATCCTGTCCTGGATCCCGGGTCAGGGTTACGGAGAGGGTTGGGAA
GCTACAGTAGGGGCAAACGGCCGAGAGAATCTGGCCAACATACACATGCG
GTTCCTACTTCGTCACTCGGAGCTGCACATGATGAGCACGCCAGACGAAG
GGATCACAGGTCGCAAAGTCCGGTGCCCCCCAAAATGAATGTCGGGCTTC
TGTCACATGCTTGGGCTTGCGATAGGCTCTCTCTCTTCATGTTTGTACAA
AAGCTGTATACATAGCACTTGAGGCAGATTCGTGTCGTGACAACGTTTCC
TCCGCGATCCGGACATTTTTTTTGTGCGTATCGATTTCGCCTAGATTGCC
TGACGTCAGAGTATTTCGCCTGCGCCGCCGATGGACTCTGCGATGACGAC
GATGACGACGATGACGACGACGTGTCCAACGAAAGCGATGACGACGTGTC
CAACGAAAGCGATGACGACGTGTCCAACAATAGCGATGACGACACGAGTG
GAGCCTCGAGGGGGGGCAACCCTTTCTCCTTGAGACAACTGTTGTTCTGC
GTTGTTGGACTTGGATTCTGGGCTCGGGCAAGCTGCTTTGACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig91:18263..22157-

>mRNA_Ecto-sp13_S_contig91.20655.1 ID=mRNA_Ecto-sp13_S_contig91.20655.1|Name=mRNA_Ecto-sp13_S_contig91.20655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1017bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91:18263..22157- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCCATCGTCGCACGCTTCCCTTTTCTGCTCCTTGTGGCGAGACTCGT
CGTCGCGAAGCAAGCTCCGGTGCAGGAGCAGATGTCGATCCCAGAACATC
TTCTCCAAGTGGGGGCGCCAATTCCCAGCTTTATCGGCAAGGCGACGAAC
CACAACTGGCAGCACATGCTCGCAGTTGCAGCCTCATCCACCACCAATAC
CACCGTCACAAATTCAAGTTCGACAAACCAATCGTCACAAGAATCATGCT
TTCCCGCAACCATGGAGGCTTGCTTTGCGAGCGTCGACTGTCTGTTATGT
GCGGCATCGGGCCCTGCTGACTGCAACGAGATTGATGTGGTGGACTGCGA
ATCGTACTGGGACTCGCTGTGCTGCACGTACGGAACCTCGGACGCCTGCA
TGGACAACACCCTACTCGTCGACTTGGTTGCTTGTTTCGGGGAATTCCTC
TGCCGGGACGGCGAAGTGGATGAAATCTGCCGCGACGGATACGTCAGAGA
CCCGGACTGGGGTGATGATGACGGCGGCGGCGACGATTTTCTCGACTCCG
ACATTGCGTGTTTGCCAGAAGCGGTGGCTTGCTCCATGTCGTCCGAGTGC
ACGGAGTGCGCCGCCGTTCTTGATCTCAGCTCAGAAACCACCACCTCCGA
GGGGGATTGCCCTCCGTACAACAACACCGGCTGCGCAGATTTTGCGGATG
CGATGTGCTGCCTGTACGGAAGCTCGCCCACTTGCCGTGAAGATGAGGAG
ATGAACGAATACATCGATTGCCTGACGTCAGAGTATTTCGCCTGCGCCGC
CGATGGACTCTGCGATGACGACGATGACGACGATGACGACGACGTGTCCA
ACGAAAGCGATGACGACGTGTCCAACGAAAGCGATGACGACGTGTCCAAC
AATAGCGATGACGACACGAGTGGAGCCTCGAGGGGGGGCAACCCTTTCTC
CTTGAGACAACTGTTGTTCTGCGTTGTTGGACTTGGATTCTGGGCTCGGG
CAAGCTGCTTTGACTAA
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