mRNA_Ecto-sp13_S_contig10182.208.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10182.208.1
Unique NamemRNA_Ecto-sp13_S_contig10182.208.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10182.208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10182contigEcto-sp13_S_contig10182:1893..2483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size591
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462513.2921739-UTR-Ecto-sp13_S_contig10182:1892..19251681462513.2921739-UTR-Ecto-sp13_S_contig10182:1892..1925Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10182 1893..1925 +
1681462513.3088288-UTR-Ecto-sp13_S_contig10182:2345..24831681462513.3088288-UTR-Ecto-sp13_S_contig10182:2345..2483Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10182 2346..2483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462513.300811-CDS-Ecto-sp13_S_contig10182:1925..23451681462513.300811-CDS-Ecto-sp13_S_contig10182:1925..2345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10182 1926..2345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10182.208.1prot_Ecto-sp13_S_contig10182.208.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10182 1926..2345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10182.208.1

>prot_Ecto-sp13_S_contig10182.208.1 ID=prot_Ecto-sp13_S_contig10182.208.1|Name=mRNA_Ecto-sp13_S_contig10182.208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MEYIFSSSIQTVVLERDGTKHPTYMIMRKKLGKRNGMSSERGMSWPQPPE
DSLRESLWEPTQRLHITTTETSELHGSRLKIPPSSPWMSCLCCGRTLWMR
DVRCTMDCTRLSQKRDRFSKHARTPDTEPNCAWTPGRHN*
back to top

mRNA from alignment at Ecto-sp13_S_contig10182:1893..2483+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10182.208.1 ID=mRNA_Ecto-sp13_S_contig10182.208.1|Name=mRNA_Ecto-sp13_S_contig10182.208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10182:1893..2483+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGGTTCACAGCAGGAAGGCAACTTCCCAAAGATGGAGTATATCTTCTC
TTCATCAATTCAGACAGTCGTTCTGGAACGCGACGGGACCAAACACCCAA
CGTACATGATAATGCGCAAAAAATTAGGCAAGCGTAACGGGATGAGCTCA
GAAAGAGGAATGAGCTGGCCACAACCTCCAGAGGACTCCTTGCGAGAGTC
CTTGTGGGAACCAACACAACGATTACACATCACGACAACAGAAACAAGTG
AATTGCATGGTTCAAGATTAAAAATTCCCCCTTCCTCCCCCTGGATGTCC
TGTCTCTGTTGCGGACGTACGTTATGGATGAGAGACGTACGATGCACGAT
GGACTGCACGCGGCTATCTCAAAAACGTGATCGGTTCTCGAAGCATGCCC
GAACACCTGATACCGAGCCGAATTGCGCCTGGACACCTGGGCGCCACAAC
TAACTGGCATCATCAAGAAGATCCTTTCAAAATTGACCTGTAGTATTTCA
CAACGATGCAAACGGCGGAGCCGATAGTAGTCCATGCTGTCGCCGACTCA
TTTTCCGATCTCGATCCAGTGGCCTACTCTGGTGTCTGCTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10182:1893..2483+

>mRNA_Ecto-sp13_S_contig10182.208.1 ID=mRNA_Ecto-sp13_S_contig10182.208.1|Name=mRNA_Ecto-sp13_S_contig10182.208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10182:1893..2483+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTATATCTTCTCTTCATCAATTCAGACAGTCGTTCTGGAACGCGA
CGGGACCAAACACCCAACGTACATGATAATGCGCAAAAAATTAGGCAAGC
GTAACGGGATGAGCTCAGAAAGAGGAATGAGCTGGCCACAACCTCCAGAG
GACTCCTTGCGAGAGTCCTTGTGGGAACCAACACAACGATTACACATCAC
GACAACAGAAACAAGTGAATTGCATGGTTCAAGATTAAAAATTCCCCCTT
CCTCCCCCTGGATGTCCTGTCTCTGTTGCGGACGTACGTTATGGATGAGA
GACGTACGATGCACGATGGACTGCACGCGGCTATCTCAAAAACGTGATCG
GTTCTCGAAGCATGCCCGAACACCTGATACCGAGCCGAATTGCGCCTGGA
CACCTGGGCGCCACAACTAA
back to top