mRNA_Ecto-sp13_S_contig9040.20598.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9040.20598.1
Unique NamemRNA_Ecto-sp13_S_contig9040.20598.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9040.20598.1 vs. uniprot
Match: A0A6H5JB34_9PHAE (SufBD_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB34_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.170e-24
Identity = 94/121 (77.69%), Postives = 95/121 (78.51%), Query Frame = 3 
Query:  222 ETDRVARGLMQSTALEPAPPPAAEKLGTTTEAKDAGSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----ISGPLDGDSVLGGMISPRPDDQTDEHQGEGDVGEG 572
            ETDRVARGLMQSTALEPAPPPAAEK  TTTEAKDAGSEA   XXX    XXXXXXXXXXXXXXXXXXXXXX               ISGPLDGDSVLG MISPRP DQT+EHQGEGDVGEG
Sbjct:   22 ETDRVARGLMQSTALEPAPPPAAEKPATTTEAKDAGSEAEAEXXXYVGEXXXXXXXXXXXXXXXXXXXXXXAEEDMPKDPRRELRKISGPLDGDSVLGEMISPRPADQTEEHQGEGDVGEG 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9040.20598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JB34_9PHAE1.170e-2477.69SufBD_N domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9040contigEcto-sp13_S_contig9040:4003..4769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size768
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-14_002170.2
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464177.2199817-CDS-Ecto-sp13_S_contig9040:4002..45121681464177.2199817-CDS-Ecto-sp13_S_contig9040:4002..4512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9040 4003..4512 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464177.2311313-UTR-Ecto-sp13_S_contig9040:4512..47691681464177.2311313-UTR-Ecto-sp13_S_contig9040:4512..4769Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9040 4513..4769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9040.20598.1prot_Ecto-sp13_S_contig9040.20598.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9040 4003..4512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9040.20598.1

>prot_Ecto-sp13_S_contig9040.20598.1 ID=prot_Ecto-sp13_S_contig9040.20598.1|Name=mRNA_Ecto-sp13_S_contig9040.20598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
ALPLRSSRITSISSNSSCCCSNSLNIKTNGYTSVHRRARMKQVLSVVRRR
RPKWIVGTTRRPTAKLSVGTTIRPKLIGSQGDSCRVQLSSPHHHRRQKSS
GRQRRQRTLVRKRKRKQGPTWEQWPKWDKSWRQRWRQTRRRWKRTYRRIP
AGSRGKLAVHSTVTQSLGG*
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mRNA from alignment at Ecto-sp13_S_contig9040:4003..4769+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9040.20598.1 ID=mRNA_Ecto-sp13_S_contig9040.20598.1|Name=mRNA_Ecto-sp13_S_contig9040.20598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=767bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9040:4003..4769+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTTGCCACTCCGCAGCAGCCGGATCACAAGCATCAGCAGCAACAGCAG
CTGCTGCTGCAGCAACAGCTTGAACATCAAGACGAACGGCTACACAAGCG
TCCACCGGAGGGCAAGAATGAAGCAAGTATTGAGCGTGGTGAGGAGGAGA
AGACCGAAATGGATCGTGGGGACGACGAGAAGGCCGACAGCGAAATTGAG
CGTGGGGACGACGATAAGGCCGAAACTGATCGGGTCGCAAGGGGACTCAT
GCAGAGTACAGCTCTCGAGCCCGCACCACCACCGGCGGCAGAAAAGCTCG
GGACGACAACGGAGGCAAAGGACGCTGGTTCGGAAGCGGAAGCGGAAGCA
GGGGCCGACGTGGGAGCAGTGGCCGAAGTGGGACAAGAGTTGGAGGCAGA
GGTGGAGGCAGACGCGAAGGCGGTGGAAGAGGACATACCGAAGGATCCCC
GCAGGGAGTCGAGGAAAATTAGCGGTCCACTCGACGGTGACTCAGTCCTT
GGGGGGATGATTTCGCCAAGGCCAGATGATCAGACCGACGAGCACCAGGG
TGAAGGCGACGTAGGCGAAGGGTAGACGTGGGGTTGGAAGCGGGGGGGGC
TCGCGTGATGCTCTAGACAAAGCCCTCTTGTTCGTGAATATGCCCTGCTG
TACCATAGTGGAGACGCCGCGAGAAAGAAACAACCGCTGGCTATGTATGT
ATTCACTCTGCGTGCATGCGTGCGTATGTATTTCTTTATTAAGTAGGCAC
TGGAAGCACCAACTGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9040:4003..4769+

>mRNA_Ecto-sp13_S_contig9040.20598.1 ID=mRNA_Ecto-sp13_S_contig9040.20598.1|Name=mRNA_Ecto-sp13_S_contig9040.20598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9040:4003..4769+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTTGCCACTCCGCAGCAGCCGGATCACAAGCATCAGCAGCAACAGCAG
CTGCTGCTGCAGCAACAGCTTGAACATCAAGACGAACGGCTACACAAGCG
TCCACCGGAGGGCAAGAATGAAGCAAGTATTGAGCGTGGTGAGGAGGAGA
AGACCGAAATGGATCGTGGGGACGACGAGAAGGCCGACAGCGAAATTGAG
CGTGGGGACGACGATAAGGCCGAAACTGATCGGGTCGCAAGGGGACTCAT
GCAGAGTACAGCTCTCGAGCCCGCACCACCACCGGCGGCAGAAAAGCTCG
GGACGACAACGGAGGCAAAGGACGCTGGTTCGGAAGCGGAAGCGGAAGCA
GGGGCCGACGTGGGAGCAGTGGCCGAAGTGGGACAAGAGTTGGAGGCAGA
GGTGGAGGCAGACGCGAAGGCGGTGGAAGAGGACATACCGAAGGATCCCC
GCAGGGAGTCGAGGAAAATTAGCGGTCCACTCGACGGTGACTCAGTCCTT
GGGGGGATGA
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