mRNA_Ecto-sp13_S_contig902.20575.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig902.20575.1
Unique NamemRNA_Ecto-sp13_S_contig902.20575.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig902.20575.1 vs. uniprot
Match: D8LB87_ECTSI (Similar to Dynein light chain Tctex-type 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB87_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 9.620e-7
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = -2 
Query:  440 IEEWSDGICSQTLAALRSVSGSFKYTGTSV 529
            +EEWSD ICSQTLAALRS+SGSFKYT T V
Sbjct:   38 VEEWSDAICSQTLAALRSISGSFKYTATCV 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig902.20575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB87_ECTSI9.620e-783.33Similar to Dynein light chain Tctex-type 1 n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig902contigEcto-sp13_S_contig902:930..1459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size530
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464175.5069861-UTR-Ecto-sp13_S_contig902:929..10821681464175.5069861-UTR-Ecto-sp13_S_contig902:929..1082Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig902 930..1082 +
1681464175.526669-UTR-Ecto-sp13_S_contig902:1391..14591681464175.526669-UTR-Ecto-sp13_S_contig902:1391..1459Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig902 1392..1459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464175.51707-CDS-Ecto-sp13_S_contig902:1082..13911681464175.51707-CDS-Ecto-sp13_S_contig902:1082..1391Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig902 1083..1391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig902.20575.1prot_Ecto-sp13_S_contig902.20575.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig902 1083..1391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig902.20575.1

>prot_Ecto-sp13_S_contig902.20575.1 ID=prot_Ecto-sp13_S_contig902.20575.1|Name=mRNA_Ecto-sp13_S_contig902.20575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MTLRTPRVPQNSSALPPYAVVAIPNETEEISLRFLKPPPFKASINVQTRM
PLANFHLNSVDVPSLCSSHFLREHGTFNVHRSPRAPSAKLDPKESVQTYR
CT*
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mRNA from alignment at Ecto-sp13_S_contig902:930..1459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig902.20575.1 ID=mRNA_Ecto-sp13_S_contig902.20575.1|Name=mRNA_Ecto-sp13_S_contig902.20575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig902:930..1459+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAGACAGGGCAGGGCAGGGGAGGATGCCGACAAACAAGCGACCCAGAA
ACACGTCGTATGTGATTGTGATGGCCGAGAGAATCCGGGGTCTGATTCAA
AGCTTGCCCCATGTATCGTACACCCTGCATGCATTGCTTTCGATAAAGGG
AACATGACCCTTCGTACTCCTAGAGTACCTCAAAACAGTTCGGCGCTCCC
ACCATACGCCGTTGTTGCCATACCCAACGAAACCGAAGAAATTTCTCTTC
GCTTTCTGAAACCGCCGCCATTTAAGGCCAGTATTAATGTCCAAACACGC
ATGCCGCTTGCAAATTTCCACCTCAACAGCGTCGACGTCCCATCGCTCTG
TTCATCTCATTTCCTACGAGAACATGGGACGTTCAACGTGCATCGATCGC
CTAGGGCGCCATCTGCGAAACTCGACCCCAAAGAGAGTGTACAGACGTAC
CGGTGTACTTGAAAGAGCCGCTGACACTTCTTAGGGCAGCCAACGTTTGG
GAGCATATCCCATCCGACCATTCTTCGATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig902:930..1459+

>mRNA_Ecto-sp13_S_contig902.20575.1 ID=mRNA_Ecto-sp13_S_contig902.20575.1|Name=mRNA_Ecto-sp13_S_contig902.20575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig902:930..1459+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCTTCGTACTCCTAGAGTACCTCAAAACAGTTCGGCGCTCCCACC
ATACGCCGTTGTTGCCATACCCAACGAAACCGAAGAAATTTCTCTTCGCT
TTCTGAAACCGCCGCCATTTAAGGCCAGTATTAATGTCCAAACACGCATG
CCGCTTGCAAATTTCCACCTCAACAGCGTCGACGTCCCATCGCTCTGTTC
ATCTCATTTCCTACGAGAACATGGGACGTTCAACGTGCATCGATCGCCTA
GGGCGCCATCTGCGAAACTCGACCCCAAAGAGAGTGTACAGACGTACCGG
TGTACTTGA
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