mRNA_Ecto-sp13_S_contig8930.20458.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8930.20458.1
Unique NamemRNA_Ecto-sp13_S_contig8930.20458.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8930.20458.1 vs. uniprot
Match: A0A6H5KPG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG0_9PHAE)

HSP 1 Score: 553 bits (1424), Expect = 1.050e-189
Identity = 452/584 (77.40%), Postives = 461/584 (78.94%), Query Frame = 1 
Query:    1 SSRLHQSGSSSVEKTGGLKIANFRSSRHVSSSSKHRVDDDVSRQATARVRAVSVTRGRHTPPQAAAGGDKGEHGAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNDGEEHARSRNISAVSTAGEAQAAPGAATAVVAADRQRASRQQQRQGSAPLRTSSGLKNPSRVLENRGRRASGNVAMISAGASTAACSTAAAA----------GRTEGISMHSDDGGTGRYRRVVTRRSSDTARPAVDLGQKEQAWKRERAQLLTVIKLQHRQLMMRPSSSSSCSWADASPSGDSVGTTSXXXXXXXXXXXXXXRSSPCVSSVTPPPLQPRQRHRPSRPWQSLTPPSATREAPIITSRPP--------------------------------------PRTHLLGKVELQREKAAARGVGRLQEGRGRGLASAGSVKSRSDSGSSWADSSAVAGPAAAPRGFPVESEDGRGXXXXXXXXXXXXXXXXXX---NDVTVSPSRRCCVEGRLEVMERNVTAVLRRLDDLEMRKSKRGNDDRSVQSTRSDRHVHAV 1599
            SSRL Q GSSSVEKTGGLKIANFRSSR VSSSSKHRV DDVSRQATA+VRA S+TRGR TPP+A             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXX         ARSRN SAVSTAG  QAAPGAATAVVAA+RQRASRQ QRQGSA L  SSG KNPSRVLENRGRRAS +V M+SAGASTAAC                GRTEGISMHSDDGG GRYRRVV RRSSDTARPAVDLGQKEQAWKRERAQLLTVIKLQHRQLMMRPSSSSSCSWAD SPSGDSVGT SXXXXXXXXXXXXXXRSSP VSSVTPPPLQ RQRHRPSRP QSLTPP ATREAPIITSRPP                                       RTHLLG+VELQREKAAARGVGRLQ GRGRGLASAGSVKSRSDSGSS  DS AVAGP AAPRGFP ESED R XXXXXXXXXXXXXXXXXX   N  TVSPSRRCCVEGRLEVMERNV AVLRRLD+LE RKSK GNDDRSVQSTRSDRHVHA+
Sbjct:   19 SSRLQQPGSSSVEKTGGLKIANFRSSRRVSSSSKHRVGDDVSRQATAQVRAASITRGRRTPPKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSAPTKXXXXXXXXXXXXXXXXXXXXXXXS--------ARSRNNSAVSTAGVGQAAPGAATAVVAAERQRASRQHQRQGSAHLHMSSGRKNPSRVLENRGRRASRSVTMVSAGASTAACXXXXXXXXXXXXXXXXGRTEGISMHSDDGGAGRYRRVVMRRSSDTARPAVDLGQKEQAWKRERAQLLTVIKLQHRQLMMRPSSSSSCSWADGSPSGDSVGTASXXXXXXXXXXXXXXRSSPYVSSVTPPPLQSRQRHRPSRPSQSLTPPPATREAPIITSRPPRLANDYDEEDSDSTPRAGARPAGXXXXXTAAPVLLSRSERTHLLGRVELQREKAAARGVGRLQAGRGRGLASAGSVKSRSDSGSSCPDSPAVAGPMAAPRGFPAESEDRRXXXXXXXXXXXXXXXXXXXXXXNAETVSPSRRCCVEGRLEVMERNVKAVLRRLDELEKRKSKGGNDDRSVQSTRSDRHVHAI 594
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BLAST of mRNA_Ecto-sp13_S_contig8930.20458.1 vs. uniprot
Match: D7FU32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU32_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 3.130e-79
Identity = 188/325 (57.85%), Postives = 191/325 (58.77%), Query Frame = 1 
Query:  655 MISAGASTAACSTAAA----------AGRTEGISMHSDDGGTGRYRRVVTRRSSDTARPAVDLGQKEQAWKRERAQLLTVIKLQHRQLMMRPSSSSSCSWADASPSGDSVGTTSXXXXXXXXXXXXXXRSSPCVSSVTPPPLQPRQRHRPSRPWQSLTPPSATREAPIITSRPPPRTHLLGKVELQREKAAARGVGRLQEGRGRGLASAGSVKSRSDSGSSWADSSAVAGPAAAPRGFPVESEDGRGXXXXXXXXXXXXXXXXXXNDVTVSPSRRCCVEGRLEVMERNVTAVLRRLDDLEMRKSKRGNDDRSVQSTRSDRHVHAV 1599
            M+SAGASTAAC  A            AG TEGISMHSDDGG GRYRRVVTRRSSDTARPAVDLGQKEQAWKR                                                                                                       RTHLLG+VELQREKAAARGVGRLQ GRGRGLASAGSVKSRSDSGSS  DSSAVAGP AAPRGFP ESEDGR      XXXXXXXXXXXXXN VTVSPSRRCCVEGRLEVMERNVTAVLRRLD+LE RKSK GNDDRSV STRSDRHVHAV
Sbjct:    1 MVSAGASTAACPAAGTXXXXXXXXXXAGWTEGISMHSDDGGAGRYRRVVTRRSSDTARPAVDLGQKEQAWKRSE-----------------------------------------------------------------------------------------------------RTHLLGRVELQREKAAARGVGRLQAGRGRGLASAGSVKSRSDSGSSCPDSSAVAGPTAAPRGFPAESEDGR---RGGXXXXXXXXXXXXXNAVTVSPSRRCCVEGRLEVMERNVTAVLRRLDELEKRKSKGGNDDRSVHSTRSDRHVHAV 221
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8930.20458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPG0_9PHAE1.050e-18977.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU32_ECTSI3.130e-7957.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8930contigEcto-sp13_S_contig8930:294..3065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1602
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_001240.1
Cds size1602
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464165.702525-CDS-Ecto-sp13_S_contig8930:293..4001681464165.702525-CDS-Ecto-sp13_S_contig8930:293..400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8930 294..400 +
1681464165.7135344-CDS-Ecto-sp13_S_contig8930:715..14471681464165.7135344-CDS-Ecto-sp13_S_contig8930:715..1447Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8930 716..1447 +
1681464165.7224035-CDS-Ecto-sp13_S_contig8930:1766..20761681464165.7224035-CDS-Ecto-sp13_S_contig8930:1766..2076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8930 1767..2076 +
1681464165.7332125-CDS-Ecto-sp13_S_contig8930:2244..25681681464165.7332125-CDS-Ecto-sp13_S_contig8930:2244..2568Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8930 2245..2568 +
1681464165.742511-CDS-Ecto-sp13_S_contig8930:2936..30651681464165.742511-CDS-Ecto-sp13_S_contig8930:2936..3065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8930 2937..3065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8930.20458.1prot_Ecto-sp13_S_contig8930.20458.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8930 294..3065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8930.20458.1

>prot_Ecto-sp13_S_contig8930.20458.1 ID=prot_Ecto-sp13_S_contig8930.20458.1|Name=mRNA_Ecto-sp13_S_contig8930.20458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=534bp
SSRLHQSGSSSVEKTGGLKIANFRSSRHVSSSSKHRVDDDVSRQATARVR
AVSVTRGRHTPPQAAAGGDKGEHGAIEETATTVMTKKTSAAAAAAAAAAA
AAAAAAADPPLVLRRAVSAPTKSRAGSSSSSSSSSCGGGGDGNDGEEHAR
SRNISAVSTAGEAQAAPGAATAVVAADRQRASRQQQRQGSAPLRTSSGLK
NPSRVLENRGRRASGNVAMISAGASTAACSTAAAAGRTEGISMHSDDGGT
GRYRRVVTRRSSDTARPAVDLGQKEQAWKRERAQLLTVIKLQHRQLMMRP
SSSSSCSWADASPSGDSVGTTSTAATTAPPAEPATPRSSPCVSSVTPPPL
QPRQRHRPSRPWQSLTPPSATREAPIITSRPPPRTHLLGKVELQREKAAA
RGVGRLQEGRGRGLASAGSVKSRSDSGSSWADSSAVAGPAAAPRGFPVES
EDGRGGGGSCCNDSGYGGGGGGGNDVTVSPSRRCCVEGRLEVMERNVTAV
LRRLDDLEMRKSKRGNDDRSVQSTRSDRHVHAV*
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mRNA from alignment at Ecto-sp13_S_contig8930:294..3065+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8930.20458.1 ID=mRNA_Ecto-sp13_S_contig8930.20458.1|Name=mRNA_Ecto-sp13_S_contig8930.20458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2772bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8930:294..3065+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTTCACGATTGCACCAGTCAGGGTCAAGTTCCGTCGAGAAGACGGGGGG
GCTCAAGATTGCCAACTTTCGTTCTTCCAGGCATGTCTCTTCTTCTTCGA
AACACAGGTGAAACTTCCGCATTAAAGACTCGGACATAGCAGTATCACAC
CTCGTAAGAGGTGAACGAGTACGCATGTTTGCAGCACTTTCTGCATTGGT
GCAGATTCGCGTGACGACAGTTGCTTATTTTCCTCGAGGAAAACGTCGAA
TTTGAAAAAAAATGAACCACCCCGTCGTCTCGCTACACACAAGACGAAAA
TCACAACTATACGTTACACCTACAACCTGTCTATCTAATTATTATGTATT
ACGTACATAGAGGAGTGTCCTTCCTGTGAACCCACCACCGCCCCGACTTA
CAAATCGTAGGGTCGATCGTAGGGTCGATGATGACGTCAGTCGGCAAGCA
ACCGCTCGAGTGAGGGCCGTCAGCGTTACCCGCGGGCGGCACACTCCGCC
ACAGGCCGCCGCCGGCGGCGATAAAGGCGAGCATGGAGCGATAGAAGAGA
CAGCGACCACGGTGATGACGAAAAAAACGTCCGCAGCCGCGGCGGCGGCA
GCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGATCCTCCCCTTGT
CCTGCGGCGGGCGGTGTCAGCGCCGACGAAGAGTCGCGCCGGTAGCAGCA
GCAGCAGCAGCAGCAGCTCCTGCGGCGGCGGGGGTGACGGCAACGACGGC
GAAGAACACGCACGTTCGAGGAATATCAGTGCAGTGTCGACAGCGGGAGA
GGCGCAGGCCGCCCCGGGGGCGGCTACTGCCGTTGTTGCCGCTGACCGCC
AGCGGGCAAGCAGGCAGCAGCAGCGGCAGGGTTCGGCGCCCCTTCGCACG
TCAAGCGGTCTGAAAAATCCTTCAAGGGTGCTGGAGAACCGAGGCCGCCG
CGCGTCCGGGAACGTTGCTATGATCTCCGCCGGCGCTTCTACTGCCGCTT
GTTCCACGGCCGCTGCCGCGGGTCGGACGGAAGGAATTTCCATGCACAGC
GATGACGGGGGCACCGGCCGTTACCGACGCGTCGTGACGCGGAGGTCCTC
AGACACGGCGCGCCCGGCGGTGGACCTGGGTCAGAAGGAGCAGGCATGGA
AGAGGTGACACAGTAAAAGACGACCGGCATAATATCTCTGTCCCCGAATT
AGACCATGTTTTTTTTTTTGCTTTAGCAAGTTCATCTGTTTGCCGCACAC
AATCACGTACTGCGTGAGGGTTGTTCTCGTCGGCGAGGCGCTTTTGCCCC
CCGCGCTTGTGGGTATGCCCCGGGATGTCTTTCTGGGGGCCCGCCGTAAC
TAAACGGAATGTGCAAATAAATGCAGTTCGCCAACCTCCCACCGCCTCCA
CGCGCGCGCGCCTTTCAACGTAGCCAGCGCGCTGACTCGTCTCCTGCCCC
CTCCCGCCGAATCGATTTCGCAGAGAAAGGGCGCAGCTCCTGACGGTTAT
AAAACTCCAGCACAGGCAGCTGATGATGCGGCCGTCCTCCTCGTCTTCCT
GCAGCTGGGCCGACGCTTCCCCGTCAGGAGACAGCGTCGGCACCACCAGC
ACGGCGGCCACGACTGCCCCTCCCGCCGAGCCGGCGACCCCCAGGTCCAG
CCCCTGCGTATCGAGCGTAACGCCGCCGCCGCTGCAGCCGCGACAGCGGC
ATCGCCCTTCACGCCCGTGGCAGTCGCTAACCCCGCCATCTGCCACAAGA
GAAGCTCCCATCATCACCTCGAGGCCGCCACCTGTCGCGAACGACTACGA
CGAGGAGGACAGCGATAGCACACCGACAGCGGGCACGTGGCCGGTGCCCC
AGCCCCCCCCGCCCCCACCTGGCGGCCTCGCCGACGGGCGGCGGCGCGAG
GCCGACGGCCAGGCCGGCGCCGCCGGCCCCGTGCTGCTGTCCAGATCGGA
GCGGACGCACCTCCTCGGCAAGGTGGAGCTCCAGCGGGAGAAGGCCGCCG
CGCGGGGGGTCGGCAGATTGCAAGAAGGCCGGGGCCGAGGGCTAGCTTCG
GCCGGGAGCGTCAAGTCTAGGAGCGACTCCGGGTCAAGCTGGGCGGACTC
GTCGGCCGTCGCCGGTCCGGCGGCGGCACCACGCGGTTTTCCCGTCGAAA
GTGAAGACGGAAGGGGGGGTGGCGGGAGCTGCTGCAACGACTCGGGGTAC
GGCGGCGGCGGCGGCGGCGGGAACGATGTTACTGTGTCGCCGTCGAGACG
GTGCTGCGTCGAAGGACGCCTAGAGGTGCGTGCGCCGGGGGGCCAACAAC
GTGGTGGTGGTTGTGTGCAAATGTTGAGACTGCTATTTTTTACCAAGTTC
TTGCTCCCTGTTGTTTTCGGACTCAATTTGTTGCGCCCTTGGTTTCTGTT
CCACGCAACCCAGTTCAGGCTGTGACCGTCTATTTTTGCCGCCCCCGGTT
GGGTGGCGTGGGAGGATTGAACAACTGTACGCAGCGGAACCGACCGGTTT
GATGCCGTTTTTGTTCCAGCGCCTGTTTATTGTCGACCGCTGGCAATACC
AGTGAAAGACGACTGTCTCAACGCACCTTCAAGTAATTGCGCTTGTGTGC
GTCGTCAGTCACACAGTAACGCTATTACACACGCAACTCTCAGGTGATGG
AAAGGAACGTGACTGCGGTGCTTCGGAGGCTGGACGATCTCGAGATGAGG
AAGAGCAAGCGCGGCAACGATGACCGGAGCGTCCAATCGACGCGGTCGGA
CCGTCATGTACACGCGGTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8930:294..3065+

>mRNA_Ecto-sp13_S_contig8930.20458.1 ID=mRNA_Ecto-sp13_S_contig8930.20458.1|Name=mRNA_Ecto-sp13_S_contig8930.20458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1602bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8930:294..3065+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTTCACGATTGCACCAGTCAGGGTCAAGTTCCGTCGAGAAGACGGGGGG
GCTCAAGATTGCCAACTTTCGTTCTTCCAGGCATGTCTCTTCTTCTTCGA
AACACAGGGTCGATGATGACGTCAGTCGGCAAGCAACCGCTCGAGTGAGG
GCCGTCAGCGTTACCCGCGGGCGGCACACTCCGCCACAGGCCGCCGCCGG
CGGCGATAAAGGCGAGCATGGAGCGATAGAAGAGACAGCGACCACGGTGA
TGACGAAAAAAACGTCCGCAGCCGCGGCGGCGGCAGCAGCGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCAGATCCTCCCCTTGTCCTGCGGCGGGCGGT
GTCAGCGCCGACGAAGAGTCGCGCCGGTAGCAGCAGCAGCAGCAGCAGCA
GCTCCTGCGGCGGCGGGGGTGACGGCAACGACGGCGAAGAACACGCACGT
TCGAGGAATATCAGTGCAGTGTCGACAGCGGGAGAGGCGCAGGCCGCCCC
GGGGGCGGCTACTGCCGTTGTTGCCGCTGACCGCCAGCGGGCAAGCAGGC
AGCAGCAGCGGCAGGGTTCGGCGCCCCTTCGCACGTCAAGCGGTCTGAAA
AATCCTTCAAGGGTGCTGGAGAACCGAGGCCGCCGCGCGTCCGGGAACGT
TGCTATGATCTCCGCCGGCGCTTCTACTGCCGCTTGTTCCACGGCCGCTG
CCGCGGGTCGGACGGAAGGAATTTCCATGCACAGCGATGACGGGGGCACC
GGCCGTTACCGACGCGTCGTGACGCGGAGGTCCTCAGACACGGCGCGCCC
GGCGGTGGACCTGGGTCAGAAGGAGCAGGCATGGAAGAGAGAAAGGGCGC
AGCTCCTGACGGTTATAAAACTCCAGCACAGGCAGCTGATGATGCGGCCG
TCCTCCTCGTCTTCCTGCAGCTGGGCCGACGCTTCCCCGTCAGGAGACAG
CGTCGGCACCACCAGCACGGCGGCCACGACTGCCCCTCCCGCCGAGCCGG
CGACCCCCAGGTCCAGCCCCTGCGTATCGAGCGTAACGCCGCCGCCGCTG
CAGCCGCGACAGCGGCATCGCCCTTCACGCCCGTGGCAGTCGCTAACCCC
GCCATCTGCCACAAGAGAAGCTCCCATCATCACCTCGAGGCCGCCACCTC
GGACGCACCTCCTCGGCAAGGTGGAGCTCCAGCGGGAGAAGGCCGCCGCG
CGGGGGGTCGGCAGATTGCAAGAAGGCCGGGGCCGAGGGCTAGCTTCGGC
CGGGAGCGTCAAGTCTAGGAGCGACTCCGGGTCAAGCTGGGCGGACTCGT
CGGCCGTCGCCGGTCCGGCGGCGGCACCACGCGGTTTTCCCGTCGAAAGT
GAAGACGGAAGGGGGGGTGGCGGGAGCTGCTGCAACGACTCGGGGTACGG
CGGCGGCGGCGGCGGCGGGAACGATGTTACTGTGTCGCCGTCGAGACGGT
GCTGCGTCGAAGGACGCCTAGAGGTGATGGAAAGGAACGTGACTGCGGTG
CTTCGGAGGCTGGACGATCTCGAGATGAGGAAGAGCAAGCGCGGCAACGA
TGACCGGAGCGTCCAATCGACGCGGTCGGACCGTCATGTACACGCGGTTT
AG
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