prot_Ecto-sp13_S_contig8920.20451.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8920.20451.1
Unique Nameprot_Ecto-sp13_S_contig8920.20451.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length57
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8920.20451.1 vs. uniprot
Match: D8LFB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB9_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 5.170e-14
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 0 
Query:    1 LGTLLVKPRLAYLLIVCSIWPNPGAVSSSLQVYVRWVPSHFYCRRSMLTSHPIFFR 56
            LGTLLVKPRLA LL+VCSI P PGAVSSS+ VYVRWVPSH         + P+FFR
Sbjct:    5 LGTLLVKPRLACLLVVCSILPYPGAVSSSV-VYVRWVPSHIVADVHAHNT-PVFFR 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8920.20451.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFB9_ECTSI5.170e-1467.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.454

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8920contigEcto-sp13_S_contig8920:4203..4373 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8920.20451.1mRNA_Ecto-sp13_S_contig8920.20451.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8920 4203..4373 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8920.20451.1 ID=prot_Ecto-sp13_S_contig8920.20451.1|Name=mRNA_Ecto-sp13_S_contig8920.20451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
LGTLLVKPRLAYLLIVCSIWPNPGAVSSSLQVYVRWVPSHFYCRRSMLTS
HPIFFR*
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