mRNA_Ecto-sp13_S_contig1018.205.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1018.205.1
Unique NamemRNA_Ecto-sp13_S_contig1018.205.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: D7FI09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI09_ECTSI)

HSP 1 Score: 549 bits (1414), Expect = 3.730e-195
Identity = 267/276 (96.74%), Postives = 273/276 (98.91%), Query Frame = 1
Query:    1 RRGVSAKHFSAKPQDRSKPFLHDSLYEHDFRNFSDEVDGLDGGEGPKGGERDVENAFKREFDRLDAGNGVVHIRDIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALGLIL 828
            RRGVSAKHFSAKPQDRSKPFLHDSLYEHDFRNFSDEVDGLDGGEGP+GGERD ENAFKREFDRLDAGNGVVHIRD+PKLIQGVLGRDVRPWILDRILKMFEAKRDG+VTW+DLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAVTHGQ+TESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLF GTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPR DLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALG+IL
Sbjct:   39 RRGVSAKHFSAKPQDRSKPFLHDSLYEHDFRNFSDEVDGLDGGEGPRGGERDGENAFKREFDRLDAGNGVVHIRDMPKLIQGVLGRDVRPWILDRILKMFEAKRDGKVTWLDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAVTHGQVTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFEGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRLDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALGIIL 314          
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A835ZLH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLH4_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.840e-56
Identity = 116/286 (40.56%), Postives = 156/286 (54.55%), Query Frame = 1
Query:   46 RSKPFLHDSLYEHDFRNFSDEVDGLDGGEGPK------GGERDVENA------------------FKREFDRLDAGNGVVHIRDIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKERE-MPEWLVANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALGLIL 828
            R+KPFLH +L++  +R+ + E++G                 RDV+                               +  + +  IP L+  V  +  R W+ DR+ K  E  R GQV W      L +V  +A  D S   R  MPEW++ +RK  P + HG+   SCYQ D+G  G  P  R++ +K GM  TT DLF GTTK T+ VPGYGGFIPASK+N RA +HGDM+++R   ++LRLF++HN  GYTGH   AACND G   CG+ P TTSGAAALGL+L
Sbjct:   99 RTKPFLHSTLHKESYRDINQEIEGFAAASVEAYRCAFLAAARDVQATSISLCGSSGXXXXXXXXXXXXXXSEGPMASPTIDVNQIPGLLVAVHSKPPR-WLADRLRKACEGDRSGQVRWDTFVAALARVLSTASKDGSLLVRTAMPEWVLISRKAHPTIQHGKRITSCYQHDVG--GAAPAQRQLTFKRGMRGTTQDLFEGTTKDTFHVPGYGGFIPASKVNARAMQHGDMQDARAYSANLRLFHKHNMAGYTGHQGHAACNDRGELLCGTHPATTSGAAALGLLL 381          
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A7R9UFG0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFG0_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.250e-36
Identity = 101/277 (36.46%), Postives = 137/277 (49.46%), Query Frame = 1
Query:    1 RRGVSAKHFSAKPQDRSKPFLHDSLYEHDFRNF-SDEVDGLDGGEGPKGGERDVENAFKREFDRLDAGNGVVHIRDIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALGLIL 828
            RRGVSA  F    +   K F+  ++Y  DF +  +D V   D    P         AF++ F     G G +    +PK++   LG      I  +    F   R G V+W D +  L ++ E+A  + S     +PEWLV + K +P V  G   +SCYQ DMG   E P+ +   YK GM ST+ DL  GTTK TY +PGY GFIP S+ N  A    + K +R  R  +    +    GYTGH P+   ND GP  CG +PLTT+GA A   +L
Sbjct:   72 RRGVSAL-FEESNKALPKRFMGSTVYRSDFIDLRADLVKLQDACRSPA--------AFQKAFFHYSRG-GELDTMLLPKVLDMALGERASEGIKSKFAAAFSKSRAGFVSWDDFRQKLGQILEAAVKEGSSGGVSVPEWLVLSSKPIPKVIVGPALKSCYQCDMGLRNENPQTKPYTYKAGMYSTSYDLLRGTTKDTYHLPGYDGFIPESRRNSFAITQVNAKRTRASRERIAENVKPAVSGYTGHIPSNLINDRGPPLCGLNPLTTTGAGARHWML 338          
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A7S2FHF5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHF5_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.630e-32
Identity = 69/148 (46.62%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  385 SYKEREMPEWLVANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALGLIL 828
            +Y+   +PEW+ A++ +   V   Q   S YQ DMG   E P DR    KTGM+ TT DL  GTTKATY +PG+ G IP ++ N R   HGD +      S LRL++RHN PGYTG  P  A ND G    G++P T+SGA+ALGL +
Sbjct:  114 TYQGATVPEWVTASKAITEDVVPRQPVRSSYQTDMGMANEKPLDRPYISKTGMAGTTQDLCAGTTKATYHIPGFSGHIPTTQRNPRVVAHGDGQKVHDMPSHLRLYHRHNMPGYTGFRPTNAKNDKGERHSGANPATSSGASALGLYV 261          
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A485KW59_9STRA (Aste57867_12656 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW59_9STRA)

HSP 1 Score: 124 bits (310), Expect = 9.250e-29
Identity = 90/259 (34.75%), Postives = 131/259 (50.58%), Query Frame = 1
Query:   49 SKPFLHDSLYEHDFRNFSDEVDGLDGGEGPKGGERDVENAFKREFDRL------DAGNGVVHIRDIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKT-GMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSG 804
            S+ FL  SLY+ DF NF D+        G +  E  +E A++  FD L      + G+  +   D+  L++ V G+     +LD    MF+   DG V+W   Q+ + +++     +          WL   + V+P  T      S +Q+D G  G  P  R    +T GM+STT DLF GTTKAT+ +P Y GFIP +K N  A   GD +  R    DLRL++ +N PGYTGH P  + N  G ++ G+D  TT+G
Sbjct:   86 SRTFLGQSLYQSDFLNFQDQ--------GRRIAEIPLE-AYEAAFDDLAQGTNQEGGSKKIARDDVKHLLRKVYGKAPTSRVLDIYTHMFDTCPDGFVSWEIFQEAVLRLSSFLLHETVKTTPGQAGWLDFVQHVIPNGT----PSSSHQVDFGVYGSEPIGRPYVSRTHGMASTTSDLFDGTTKATFHIPRYQGFIPQTKFNPTAVVQGDAERGRTKAEDLRLYHLNNVPGYTGHKPVDSKNVRGEAKTGTDIRTTNG 331          
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A6G0XRS2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRS2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.310e-28
Identity = 91/261 (34.87%), Postives = 131/261 (50.19%), Query Frame = 1
Query:   49 SKPFLHDSLYEHDFRNFSDEVDGLDGGEGPKGGERDVENAFKREFDRL------DAGNGVVHIR--DIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKT-GMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSG 804
            S+ FL  SLY+ DF NF +E        G +  E  +E AF+  FD L      ++ + V  I   D+ +L+Q V G+     IL+    MF+   DG VTW   Q+   +++                W+   +KV+P  T      S +Q+D G  G  P  R    ++ GM+STT DLF G+TKA+Y +P Y GFIP +K N  A   G+ +  R    DLRL++ +N PGYTGH P  + N  G ++ G D  TT+G
Sbjct:   85 SRTFLGQSLYQRDFANFHEE--------GKRIAELSME-AFQAAFDSLAEEPNQESPDAVKKINRDDVGELLQAVYGKPPATRILEIYAHMFDVCPDGFVTWEVFQEATLRLSSFLLHQTIKPSSHSIGWVDFVKKVLPNGT----PSSSHQIDYGTYGSDPLARPYMNRSHGMASTTSDLFDGSTKASYHIPRYQGFIPHTKCNPTAVSQGECEKPRPKAEDLRLYHSNNIPGYTGHKPVDSKNVRGEAKTGCDVRTTNG 332          
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A1V9ZS18_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS18_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.210e-27
Identity = 92/257 (35.80%), Postives = 133/257 (51.75%), Query Frame = 1
Query:   52 KPFLHDSLYEHDFRNFSDEVDGLDGGEGPKGGERDVENAFKREFDRL-DAGNGVVHI-RDIPK-LIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWL--VANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKT-GMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSG 804
            K FL  SLYE DF +F ++   L   E P+         +KR FD L +AG     + RD+ K L+  V G      +LD    MF+   DG +TW   ++ L ++     S+ + K    P W+  ++ R+++P    G +  S +Q+D G  G  P  R    +T GM+STT DL  GTTK T+ +P YGGF+P +  N  A   GD    R   +DLRL++ +N PGYTGH P  + N  G +  G+D  TT+G
Sbjct:   84 KKFLGQSLYETDFVHFQNQGKALL--EMPR-------EEYKRAFDALAEAGGQEPRLSRDLVKELLTAVYGTPPSARMLDIYAHMFDPIADGYITWPVFEEALERLTLFV-SNATSKLHGKPSWMEYLSLRRLLP----GTMPSSSHQIDYGTYGSDPLARPYLGRTKGMASTTSDLADGTTKNTFHIPRYGGFMPEAPHNPTAVAQGDCPQPRSKGADLRLYHLNNIPGYTGHKPVDSKNVRGEAATGTDQRTTNG 326          
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A024U6R1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6R1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 7.320e-26
Identity = 91/270 (33.70%), Postives = 131/270 (48.52%), Query Frame = 1
Query:   49 SKPFLHDSLYEHDFRNFSDEVDGLDGGEGPKGGERDVE---NAFKREFDRL------------DAGNGVVHIRDIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWL--VANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKT-GMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSG 804
            S+ FL  +LY+HDF NF +E            G R       A+   FD L            D     +   D+  ++  V G+     ILD    MF+A  DG ++W   Q+ + +++ S     + K      WL  VA + V+    HG    S +Q+D G  G  P  R    +T GM+STT D+F GT+KAT+ +P Y GFIP +K N  A   GD ++ R    DLRL++ +N PGYTGH P  + N  G ++ G+D  TT+G
Sbjct:   88 SRTFLGQTLYQHDFLNFHEE------------GRRIAALPMAAYAAAFDELTHVPNQDSTSDADPKQKKIARDDVKAVLCAVYGKPPTARILDIYAHMFDACPDGFISWEIFQEAVCRLS-SLLLHQTVKVSGQAGWLEFVAAKHVL----HGGTPASSHQIDFGTYGGNPLARPYVGRTNGMASTTADMFDGTSKATFHIPRYQGFIPHTKYNPTAVAQGDCEHVRGKSEDLRLYHLNNLPGYTGHKPVDSKNVRGEAKTGTDGRTTNG 340          
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: W4FY68_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FY68_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.420e-24
Identity = 90/272 (33.09%), Postives = 135/272 (49.63%), Query Frame = 1
Query:   49 SKPFLHDSLYEHDFRNFSDEVDGLDGGEGPKGGERDVE---NAFKREFDRL---------DAGNGVVHIR-----DIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWL--VANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKT-GMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSG 804
            S+ FL  +LY++DF NF DE            G R        +   FD+L          + + +  ++     D+  L++ V G+     IL+    MF+A  DG ++W   Q+ + ++A S     + K      W   VA ++++P    G    S +Q+D G  G  P  R    +T GM+STT DLF GTTKAT+ +P Y GFIP +K N  A   GD + +R    DLRL++ +N PGYTGH P  + N  G ++ G+D  TT+G
Sbjct:   88 SRTFLGQTLYQNDFLNFQDE------------GRRIAALPAAVYAASFDQLATVPNQDPTPSDSDLFKLKRLARDDVKTLLRQVYGKPPTSRILEIYAHMFDACPDGFISWDVFQEAVARLA-SFLLHQTIKISGQAGWFDFVAAKQMLP----GGTPASSHQLDFGTYGSEPLARPYIGRTNGMASTTTDLFDGTTKATFHIPRYQGFIPQTKYNPTAVAQGDGEQTRGKEEDLRLYHLNNLPGYTGHKPVDSKNVRGEAKTGTDSRTTNG 342          
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Match: A0A6A5B0E1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B0E1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.130e-24
Identity = 93/272 (34.19%), Postives = 136/272 (50.00%), Query Frame = 1
Query:   49 SKPFLHDSLYEHDFRNFSDE---VDGLDGG--------------EGPKGGERDVENAFKREFDRLDAGNGVVHIRDIPKLIQGVLGRDVRPWILDRILKMFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWL--VANRKVMPAVTHGQLTESCYQMDMGKDGEIPRDRRIWYKT-GMSSTTLDLFGGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSG 804
            S+ FL  +LY++DF NF DE   +  L                 + P   + D+   FK +  RL A + V        L++ V G+     IL+    MF+A  DG ++W   Q+ + ++A S     + K      W   VA ++++P    G    S +Q+D G  G  P  R    +T GM+STT DLF GTTKAT+ +P Y GFIP +K N  A   GD + +R    DLRL++ +N PGYTGH P  + N  G ++ G+D  TT+G
Sbjct:   88 SRTFLGQTLYQNDFLNFQDEGRRIAALPAAVYAASFDQLATVPNQDPTPSDSDL---FKLK--RL-ARDDVXXXXXXXTLLRQVYGKPPTSRILEIYAHMFDACPDGFISWDVFQEAVARLA-SFLLHQTIKISGQAGWFDFVAAKQMLP----GGTPASSHQLDFGTYGSEPLVRPYIGRTNGMASTTTDLFDGTTKATFHIPRYQGFIPQTKYNPTAVAQGDGEQTRGTEEDLRLYHLNNLPGYTGHKPVDSKNVRGEAKSGTDSRTTNG 348          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1018.205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FI09_ECTSI3.730e-19596.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZLH4_9STRA1.840e-5640.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9UFG0_9STRA2.250e-3636.46Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2FHF5_9STRA1.630e-3246.62Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A485KW59_9STRA9.250e-2934.75Aste57867_12656 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XRS2_9STRA1.310e-2834.87Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZS18_9STRA2.210e-2735.80Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024U6R1_9STRA7.320e-2633.70Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4FY68_9STRA1.420e-2433.09Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6A5B0E1_9STRA2.130e-2434.19Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1018contigEcto-sp13_S_contig1018:425..3404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score361.7
Seed ortholog evalue2e-97
Seed eggNOG ortholog2880.D7FI09
Model size1114
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2CYS9@1,2S63T@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_006620.1
Cds size537
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1018.205.1prot_Ecto-sp13_S_contig1018.205.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1018 1494..3121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462513.0308704-UTR-Ecto-sp13_S_contig1018:424..5291681462513.0308704-UTR-Ecto-sp13_S_contig1018:424..529Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1018 425..529 +
1681462513.0407286-UTR-Ecto-sp13_S_contig1018:1304..14931681462513.0407286-UTR-Ecto-sp13_S_contig1018:1304..1493Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1018 1305..1493 +
1681462513.0870981-UTR-Ecto-sp13_S_contig1018:3121..34041681462513.0870981-UTR-Ecto-sp13_S_contig1018:3121..3404Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1018 3122..3404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462513.0494072-CDS-Ecto-sp13_S_contig1018:1493..15101681462513.0494072-CDS-Ecto-sp13_S_contig1018:1493..1510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1018 1494..1510 +
1681462513.058299-CDS-Ecto-sp13_S_contig1018:1938..20591681462513.058299-CDS-Ecto-sp13_S_contig1018:1938..2059Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1018 1939..2059 +
1681462513.0675633-CDS-Ecto-sp13_S_contig1018:2318..24801681462513.0675633-CDS-Ecto-sp13_S_contig1018:2318..2480Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1018 2319..2480 +
1681462513.0772054-CDS-Ecto-sp13_S_contig1018:2884..31211681462513.0772054-CDS-Ecto-sp13_S_contig1018:2884..3121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1018 2885..3121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1018.205.1

>prot_Ecto-sp13_S_contig1018.205.1 ID=prot_Ecto-sp13_S_contig1018.205.1|Name=mRNA_Ecto-sp13_S_contig1018.205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
MFEAKRDGQVTWVDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVMPA
VTHGQLTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFGGTTKATYQ
VPGYGGFIPASKMNLRAREHGDMKNSRRPRSDLRLFYRHNNPGYTGHAPA
AACNDPGPSRCGSDPLTTSGAAALGLIL*
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mRNA from alignment at Ecto-sp13_S_contig1018:425..3404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1018.205.1 ID=mRNA_Ecto-sp13_S_contig1018.205.1|Name=mRNA_Ecto-sp13_S_contig1018.205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2980bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1018:425..3404+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGAGGGGTTTCTGCCAAACACTTTTCGGCGAAACCACAGGATAGGTC AAAGCCGTTCCTTCACGACTCATTGTACGAGCACGACTTCAGGAACTTCT CCGACGTAAGCCGATCGACGCAGAAGAAGTACCTTTTCCCGTCGAATACG AGTTGCAGCTGAAAGTGTCGGCCAAAAAGTAGCGTAGACCACTTAACCTA CTCTTTAGTATGGTGACGTGACTTGCGTACGTAGGAGAGCTGTTCTCCTG AGCAGAACGTTCGCGAGAATACTCGCTCTTTATCGATCCTACCATCAACC GCTGAGAACATACATGTTCTTGGACGAATTTTTTCACATACACCCCCCGT TCACATTCAGCAGTGCTGAACCTTACCATTTCTGGGTGATACGACGCTGC GACGAAAAAATTTCAAGCATTGGTACCTGCGCGGCGTAGTACACAAGCGT TGCCTTTGAGTGATGCTACGGTAGGAGCGTCACCTCATCTTACGTTAGAG ACAAACTCTAGTTGAATTTGTTGGCCGCGTCGTTTTTGCCGTGCGAAAAC GGAAACAGGACTCAACGTTTTCTCCCGAAAGTAATATTTCACAACAAAGG TGCACCCCCGTAACGTAGCATTAGTCCTTAGTCGCATACGGCGTGCTGCC CGTTATTGGCCCTTGCTGGTCGTCGTCGCGAGTCAACGATCGAGACAACA ACCGCATTAACCAAGATTGCGAAATCCACTACTACTGCTGCATGCCGATG TACACGGGTGTTGTGTACATCAGGTATAACGCATTTTTACTCTTCCAATA CTATCTCGCACTACTGTATTCCTTTCTTGTGGGCCACATAAAACTGACGT GAACGGTCGTGCCACGCAAAAAATATACAGGAGGTAGACGGGCTGGACGG GGGAGAAGGGCCGAAAGGGGGGGAACGCGACGTGGAGAACGCCTTCAAGC GGGAGTTCGACAGGCTAGACGCGGGCAACGGCGTGGTCCACATACGGGAC ATTCCGAAGCTCATCCAGGGTGTGCTTGGCCGCGACGTGCGCCCTTGGAT CCTGGACCGTATCCTCAAGATGTTTGAGGCGAAAAGGTACCAATACTGCA CTAGTCGGAAGCCTAGCGATTAGGGTGGTGCTGCCTGAGTCGGCGAGAAA GCTGTGTGTGCAACGAAGTCTATGGGAGAGGCTTGCTGTAACTGGATACC TCGTGGAGTTGTTGCTGGGAGACCTATGTTTTCGGTACCCTTGGTGTTTG GCTGCGCACGGCGTTCGAGGCCACCACATGTATCAGCCTCCCTTGTCGGC GCGAAACACACACCCTGGTCGACACTTGTCAGTGTAGTAGGGTTGAGGGC CTGCGTGATATTTTCTGTTTGGAAAAGTAATCAGAGGCTCAGGTTCAGAC TGGATGGTGCTCTCGTGTGGCGCTCGAAGAAACGTTCGGGGTCGCCAATT CAACCGATGTCTTGAAAACGCCTACCCGCAAGTGTTTCCCAACAGACCTT AACATCTACCGCAGGGACGGCCAAGTCACCTGGGTCGACCTTCAGGATGG ACTGAGGAAGGTGGCGGAGTCGGCCAGGTCCGACGTGTCGTACAAGGAGA GAGAGATGCCAGAATGGCTCGTCGCCAACAGAAAGGTTCCTTTTCAGTAC CTAGTTTGTTCGATATTGATCCCTTGGTCTCTATTTGGCCGTGACAATTT CACAGAGCACCTCTGAAAATTCTTGTGCTCATCGCCGTATGCATAAGTTC GAAGAGACAGAGGAGGTGTCATGCGTGAAATTCCTCTCGTTAAACGCTGC TCCGTCATCAAAATTTTGTCTCTGATTATACCATCACGGAAGATACCCGT TTCTTTCTTCCGTGACCGCGATGATGGCCTGTGGCATGCAACAGGTCATG CCGGCGGTAACGCACGGGCAACTGACGGAGAGCTGCTACCAAATGGACAT GGGCAAGGACGGGGAGATACCGCGCGACCGCAGGATCTGGTACAAGACCG GCATGTCCTCGACGACCCTCGACCTCTTCGGAGGCACCACGAAGGCTACC TACCAGGTCATCTTTATCCTCCCACCTGATACTATTTGTAGCGGGAAAGA GGTCGGCGATGGAGGAGCAGTGATGTTGGGTTCTGTTTCTCATCTCAGAG TCTAGTCCACTCCCGGGTTGATCCGTGGAACATGTGCTTCTTGGGGGCTG AAGGAGTAACGTGTACTGAACGGCCTTCTACTTTTTGTTCGGGAGTACCA CCTATCGACCCGCTAGTGTTTTCGCCGGGCGTGGCGAGTGAGATCCATTC GCTTCCGTCAGAGCTTGTTTTGTTTGTCATGATGTTCATGATATCTCCCT GCCCCCACGACCCATCGGACTTCCCCCGTGTTCCCCGTTCGCCGCTCAAT ACTTACCCCCCCAACACAACAACCACAATGAAATCTAATTGCTCGTGATG TCCCCTATAGGTGCCGGGATACGGCGGTTTCATACCCGCGAGCAAAATGA ACCTCCGCGCTCGCGAGCATGGCGACATGAAGAATTCGAGACGGCCACGT TCGGACCTTCGCCTCTTCTACCGTCACAACAACCCCGGTTACACCGGCCA TGCACCTGCCGCCGCCTGCAACGACCCGGGCCCGTCGCGCTGCGGTTCCG ACCCACTCACTACCTCCGGTGCCGCGGCACTGGGGCTAATCTTATAAAAG TGCGAGCGATCGCAACACGATAGCTAAAGGTCATACGGAAACATTATTCT TCGAGTGTTCTTTTTTCCGGGGGGGGGGGTACTCACAACACGTTATGGCT ACTATAGTCACTGGGTTGATGGTATCAAGCCGTATCTTCGTGTTGTCTTC AAGACGGGAGTGTATGAAAAGAAATGCAATCAACAACGGGCCGCTTGTAG ATCACCGTCGTCGTCGCCGTTGTAAACGGTCGGTGCTACTTGTAATGTAG TTCTGCTGTCTTTTTTCAGGGAGGGGAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1018:425..3404+

>mRNA_Ecto-sp13_S_contig1018.205.1 ID=mRNA_Ecto-sp13_S_contig1018.205.1|Name=mRNA_Ecto-sp13_S_contig1018.205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1018:425..3404+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGAGGCGAAAAGGGACGGCCAAGTCACCTGGGTCGACCTTCAGGA
TGGACTGAGGAAGGTGGCGGAGTCGGCCAGGTCCGACGTGTCGTACAAGG
AGAGAGAGATGCCAGAATGGCTCGTCGCCAACAGAAAGGTCATGCCGGCG
GTAACGCACGGGCAACTGACGGAGAGCTGCTACCAAATGGACATGGGCAA
GGACGGGGAGATACCGCGCGACCGCAGGATCTGGTACAAGACCGGCATGT
CCTCGACGACCCTCGACCTCTTCGGAGGCACCACGAAGGCTACCTACCAG
GTGCCGGGATACGGCGGTTTCATACCCGCGAGCAAAATGAACCTCCGCGC
TCGCGAGCATGGCGACATGAAGAATTCGAGACGGCCACGTTCGGACCTTC
GCCTCTTCTACCGTCACAACAACCCCGGTTACACCGGCCATGCACCTGCC
GCCGCCTGCAACGACCCGGGCCCGTCGCGCTGCGGTTCCGACCCACTCAC
TACCTCCGGTGCCGCGGCACTGGGGCTAATCTTATAA
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