mRNA_Ecto-sp13_S_contig8920.20450.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8920.20450.1
Unique NamemRNA_Ecto-sp13_S_contig8920.20450.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8920.20450.1 vs. uniprot
Match: A0A6H5KM83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM83_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 2.510e-78
Identity = 109/114 (95.61%), Postives = 112/114 (98.25%), Query Frame = 2 
Query:  212 MIDVVFGTPKKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAVHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLSRVQPVDRGIILFNACCR 553
            M+DVVFGTPKKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIA+HGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKL  VQPV+RGIILFNACCR
Sbjct:    1 MMDVVFGTPKKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVERGIILFNACCR 114
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BLAST of mRNA_Ecto-sp13_S_contig8920.20450.1 vs. uniprot
Match: A0A6H5JXU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU8_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 1.120e-69
Identity = 98/119 (82.35%), Postives = 108/119 (90.76%), Query Frame = 2 
Query:  197 ANTTFMIDVVFGTPKKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAVHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLSRVQPVDRGIILFNACCR 553
             + T M+DVVFGTPKKEGDPLPIL+RWE CPT  TPG+V++P+LAVWHETAPCFLDGV+TTVTKIA+ GRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKL  VQPV R I+LFNACCR
Sbjct:   57 CDETCMMDVVFGTPKKEGDPLPILLRWEFCPTQNTPGVVSEPTLAVWHETAPCFLDGVMTTVTKIAIRGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRRIMLFNACCR 175
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BLAST of mRNA_Ecto-sp13_S_contig8920.20450.1 vs. uniprot
Match: D7G025_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G025_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 4.560e-64
Identity = 96/118 (81.36%), Postives = 102/118 (86.44%), Query Frame = 2 
Query:  197 ANTTFMIDVVFGTPKKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAVHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLSRVQPVDRGIILFNACC 550
             +TTFM+DVVFGT KK G PLPILMRW+ CPTLITPGLVAKPSLAVWHETAPCFL GVVTTVTKIA+HGRIPLEWAWPNPR   LPTARRP  HLQWAIK  RVQPV R ++LFNA C
Sbjct:   57 CDTTFMMDVVFGTAKK-GKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFNAWC 173
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BLAST of mRNA_Ecto-sp13_S_contig8920.20450.1 vs. uniprot
Match: A0A6H5L242_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L242_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.790e-48
Identity = 80/120 (66.67%), Postives = 92/120 (76.67%), Query Frame = 2 
Query:  197 ANTTFMIDVVFGTPKKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAVHGRIPLEWAW-PNPRAGRLPTARRPLPHLQWAIKLSRVQPVDRGIILFNACCR 553
              TTFM+D+VFGT KK G+PLPIL+RW+ CPTLI PGLVAKPSLAVWHETAPCFLDG+V+TVTKIA+HGR PL+      P  G    +    P+LQ AIKL  VQPV R I+LFNACCR
Sbjct:   41 CGTTFMVDIVFGTAKK-GEPLPILLRWDFCPTLIAPGLVAKPSLAVWHETAPCFLDGIVSTVTKIAIHGRNPLDRVGLAKPSGGATTHSTTAPPNLQCAIKLPGVQPVKRRIMLFNACCR 159
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BLAST of mRNA_Ecto-sp13_S_contig8920.20450.1 vs. uniprot
Match: D7FPI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI1_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.390e-20
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 2 
Query:    2 AETRVCCRRCLLVTLRKGMVTGRDPRLPSAIQIHGTLFFGSTYFWGDWV 148
            AETRVC RRCLL TLRKGM+TGRDPRLPSAIQ+ G  FFGSTYFWGDWV
Sbjct:   37 AETRVCVRRCLLGTLRKGMLTGRDPRLPSAIQLCGKHFFGSTYFWGDWV 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8920.20450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KM83_9PHAE2.510e-7895.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXU8_9PHAE1.120e-6982.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G025_ECTSI4.560e-6481.36Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5L242_9PHAE1.790e-4866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI1_ECTSI1.390e-2085.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8920contigEcto-sp13_S_contig8920:1619..2174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size556
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464165.125275-CDS-Ecto-sp13_S_contig8920:1618..19631681464165.125275-CDS-Ecto-sp13_S_contig8920:1618..1963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8920 1619..1963 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464165.1362967-UTR-Ecto-sp13_S_contig8920:1963..21741681464165.1362967-UTR-Ecto-sp13_S_contig8920:1963..2174Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8920 1964..2174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8920.20450.1prot_Ecto-sp13_S_contig8920.20450.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8920 1619..1963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8920.20450.1

>prot_Ecto-sp13_S_contig8920.20450.1 ID=prot_Ecto-sp13_S_contig8920.20450.1|Name=mRNA_Ecto-sp13_S_contig8920.20450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MIDVVFGTPKKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFL
DGVVTTVTKIAVHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLSRVQ
PVDRGIILFNACCR*
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mRNA from alignment at Ecto-sp13_S_contig8920:1619..2174-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8920.20450.1 ID=mRNA_Ecto-sp13_S_contig8920.20450.1|Name=mRNA_Ecto-sp13_S_contig8920.20450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=556bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8920:1619..2174- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCGAAACCCGAGTTTGTTGTCGGAGATGTCTTCTTGTTACACTCCGGA
AAGGTATGGTGACTGGCCGGGATCCTCGCCTCCCGAGCGCAATACAGATA
CACGGGACACTCTTCTTTGGCAGCACGTATTTTTGGGGTGATTGGGTATG
GAAACCCATGTACATGTTGCGGTGGTGCAAGCTGGGCTGAGAGGTTGCAA
ACACAACGTTCATGATAGACGTAGTGTTTGGTACTCCCAAGAAGGAGGGG
GACCCATTGCCGATCCTGATGCGGTGGGAAATTTGCCCGACGCTGATCAC
TCCGGGTTTGGTTGCGAAGCCTTCGCTTGCAGTCTGGCATGAAACAGCAC
CTTGCTTTCTGGACGGTGTCGTGACGACGGTGACTAAAATCGCCGTACAC
GGACGTATCCCTCTCGAGTGGGCCTGGCCAAACCCTCGGGCGGGACGACT
GCCTACGGCACGACGGCCCCTGCCTCATCTACAATGGGCAATCAAGTTGT
CTCGGGTACAGCCAGTCGACCGTGGAATCATATTGTTCAACGCATGCTGC
AGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8920:1619..2174-

>mRNA_Ecto-sp13_S_contig8920.20450.1 ID=mRNA_Ecto-sp13_S_contig8920.20450.1|Name=mRNA_Ecto-sp13_S_contig8920.20450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8920:1619..2174- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATAGACGTAGTGTTTGGTACTCCCAAGAAGGAGGGGGACCCATTGCC
GATCCTGATGCGGTGGGAAATTTGCCCGACGCTGATCACTCCGGGTTTGG
TTGCGAAGCCTTCGCTTGCAGTCTGGCATGAAACAGCACCTTGCTTTCTG
GACGGTGTCGTGACGACGGTGACTAAAATCGCCGTACACGGACGTATCCC
TCTCGAGTGGGCCTGGCCAAACCCTCGGGCGGGACGACTGCCTACGGCAC
GACGGCCCCTGCCTCATCTACAATGGGCAATCAAGTTGTCTCGGGTACAG
CCAGTCGACCGTGGAATCATATTGTTCAACGCATGCTGCAGGTGA
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