mRNA_Ecto-sp13_S_contig12463.2041.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12463.2041.1
Unique NamemRNA_Ecto-sp13_S_contig12463.2041.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12463.2041.1 vs. uniprot
Match: A0A6H5JXR3_9PHAE (AD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXR3_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 6.350e-79
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:    1 DVVPGAPVVDDCMALPNISGRELDRKENKALQEATKAWAQINPGATNEGQAIFDLFTKTLDCSWSDQSIVILESVRIDPPYTADSCRSLDGDKPGLDRALLMLGKFRKQLEGPKSG 348
            DVVPGAPVVDDCMALPNISGRELDRKENKALQEATKAWAQINPGATNEGQAIFDLFTKTLDCSWSDQSIVILESVRIDPPYTAD+CRSLDGDKPGLDRALLMLGKFR QLEGPKSG
Sbjct:   60 DVVPGAPVVDDCMALPNISGRELDRKENKALQEATKAWAQINPGATNEGQAIFDLFTKTLDCSWSDQSIVILESVRIDPPYTADNCRSLDGDKPGLDRALLMLGKFRNQLEGPKSG 175
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BLAST of mRNA_Ecto-sp13_S_contig12463.2041.1 vs. uniprot
Match: A0A7S4A542_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A542_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.050e-19
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:   43 LPNISGRELDRKENKALQEATKAWAQINPGATNEGQAIFDLFTKTLDCSWSDQSIVILESVRIDPPYTADSCRSLDGDKPGLDRALLML 309
            LP I      ++E++A +    A A +NP A+  GQA FD  +KTLDCSWS  SI +L+ VR+D PYT D+C SLDG+K  L+R   ++
Sbjct:   88 LPAIDVAACKKRESEAYEAMEAAMAMLNPNASAAGQACFDALSKTLDCSWSGDSINVLDQVRVDAPYTEDACVSLDGNKSSLERIRKIV 176
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BLAST of mRNA_Ecto-sp13_S_contig12463.2041.1 vs. uniprot
Match: A0A8J2SSH3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSH3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.870e-18
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:   43 LPNISGRELDRKENKALQEATKAWAQINPGATNEGQAIFDLFTKTLDCSWSDQSIVILESVRIDPPYTADSCRSLDGDKPGLDRALLML 309
            LP I      ++E++A +    A A +NP A+  GQA FD  +KTLDCSWS  SI +L+ VR+D PYT D+C SLDG+K  L+R   ++
Sbjct:   88 LPAIDVAACKKRESEAYEAMEAAMAMLNPNASAAGQACFDALSKTLDCSWSGDSINVLDQVRVDAPYTEDACVSLDGNKSSLERIRKIV 176
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BLAST of mRNA_Ecto-sp13_S_contig12463.2041.1 vs. uniprot
Match: A0A397T4J8_9GLOM (Anticodon-binding domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T4J8_9GLOM)

HSP 1 Score: 82.4 bits (202), Expect = 1.290e-16
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:   43 LPNISGRELDR---KENKALQEATKAWAQINPGATNEGQAIFDLFTKTLDCSWSDQSIVILESVRIDPPYTADSCRSLDGDKPGLDRALLMLGKFRKQLEGPKSG 348
            +P++    +DR   +E +A++E   A A+I  G T + Q IFD  +KTL C W+ +SI++LE VRIDPPY  D C+++      L +   +L   RK+LE  +SG
Sbjct:  162 VPSVGYVPMDRIQAREIQAVKETQAALARIGVGVTQKAQDIFDALSKTLPCRWAKESIIVLEEVRIDPPYDIDDCKAVPSASGSLTQVRKVLEGERKRLERLESG 266
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BLAST of mRNA_Ecto-sp13_S_contig12463.2041.1 vs. uniprot
Match: A0A150FZM8_GONPE (AD domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FZM8_GONPE)

HSP 1 Score: 79.7 bits (195), Expect = 1.840e-16
Identity = 38/98 (38.78%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:   37 MALPNISGRELDRKENKALQEATKAWAQINPGATNEGQAIFDLFTKTLDCSWSDQSIVILESVRIDPPYTADSCRSLDGDKPGLDRALLMLGKFRKQL 330
            + LP++      ++E KALQ+A    +++  G T E QAIFD   KT+ C W D+SIV+L++V +D PYT DS RS        +R  ++L   R++L
Sbjct:   61 LELPHVDLERCRKREEKALQQAELESSRVGHGVTKEAQAIFDALVKTMPCVWRDKSIVVLDTVYVDEPYTPDSVRSDKDHTATRERVKMVLRLERERL 158
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BLAST of mRNA_Ecto-sp13_S_contig12463.2041.1 vs. uniprot
Match: A0A836BVG9_9CHLO (AD domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BVG9_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 5.830e-16
Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:   37 MALPNISGRELDRKENKALQEATKAWAQINPGATNEGQAIFDLFTKTLDCSWSDQSIVILESVRIDPPYTADSCRSLDGDKPGLDRALLMLGKFRKQL 330
            + LP +      ++E +ALQ+A    A++  G T E QAIFD   KT+   W ++SIV+L+SV +D PYT D+CRS +  +   +R  ++L   R++L
Sbjct:   77 LTLPLVDLERCRKREERALQQAELESARVGEGVTKEAQAIFDALVKTMPTVWRNKSIVVLDSVYVDEPYTPDTCRSDEEHRATRERVKMVLKLERQRL 174
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BLAST of mRNA_Ecto-sp13_S_contig12463.2041.1 vs. uniprot
Match: K0TED1_THAOC (AD domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TED1_THAOC)

HSP 1 Score: 77.4 bits (189), Expect = 3.040e-15
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:   37 MALPNISGRELDRKENKALQEATKAWAQINPGATNEGQAIFDLFTKTL-DCSWSDQSIVILESVRIDPPYTADSCRSLDGDKPGLDRALLMLGK 315
            + LPN++ R L+ +E +AL+ A +A+++IN  A+ EGQ IFD   K   +  W   SI++L+ +R+DPPYTADSC SL     GLD   L+  K
Sbjct:   95 LPLPNVNRRALEDRERRALRIAEEAFSKINDKASVEGQQIFDKLLKACNEVEWRGNSILVLKEIRVDPPYTADSC-SLIKKSGGLDAHSLVRVK 187
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BLAST of mRNA_Ecto-sp13_S_contig12463.2041.1 vs. uniprot
Match: M1V5U3_CYAM1 (AD domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1V5U3_CYAM1)

HSP 1 Score: 75.9 bits (185), Expect = 1.510e-14
Identity = 34/97 (35.05%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:   40 ALPNISGRELDRKENKALQEATKAWAQINPGATNEGQAIFDLFTKTLDCSWSDQSIVILESVRIDPPYTADSCRSLDGDKPGLDRALLMLGKFRKQL 330
            +LP +S   L ++E+++L  A +  +++  G +  GQ +FD   +TL C W + +I++L+SV + PPYTA+  RSLD D+    R  L+L +   +L
Sbjct:  100 SLPALSIEALRQRESRSLARARERSSKLGRGVSVLGQLVFDALDRTLPCRWDEPNIIVLDSVYVPPPYTAEGVRSLDDDEAAAQRVRLVLERELPRL 196
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BLAST of mRNA_Ecto-sp13_S_contig12463.2041.1 vs. uniprot
Match: A0A4P9XH48_9FUNG (Anticodon-binding domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XH48_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 1.600e-14
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:   43 LPNISGRELDR---KENKALQEATKAWAQINPGATNEGQAIFDLFTKTLDCSWSDQSIVILESVRIDPPYTADSCRSLDGDKPGLDRALLMLGKFRKQLE 333
            +P +    LDR   +E KA++EA +A A+   G   E Q IFD  +KTL C W +Q+IV+L+ V ++PPYT +SC++       L R   + G+ RK+L+
Sbjct:  155 MPTVGPLPLDRLRAREAKAIKEAHQAEARRGVGVDKEAQDIFDALSKTLPCRWHEQTIVVLDEVLVEPPYTVESCKANASSSSSLARVKKLEGE-RKRLK 253
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BLAST of mRNA_Ecto-sp13_S_contig12463.2041.1 vs. uniprot
Match: A0A077WPF1_9FUNG (AD domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WPF1_9FUNG)

HSP 1 Score: 75.5 bits (184), Expect = 2.120e-14
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:   31 DCMALPNISGRELDRKENKALQEATKAWAQINPGATNEGQAIFDLFTKTLDCSWSDQSIVILESVRIDPPYTADSCRSLDGDKPGLDRALLMLGKFRKQLE 333
            D + +  +    LD +E+  ++   +  A++  G T E Q IFD  +KTL C WS+ +IV+L+ V I PPY  DSC++       L R   +L   R++LE
Sbjct:  105 DFLPINYVDTNRLDARESSGVKNMRQRVAKMGVGVTKEAQDIFDALSKTLPCRWSNDTIVVLDEVLIQPPYDVDSCKANSSSASSLARVKKVLEGERRRLE 205
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12463.2041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXR3_9PHAE6.350e-7998.28AD domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S4A542_9STRA1.050e-1946.07Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SSH3_9STRA1.870e-1846.07Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A397T4J8_9GLOM1.290e-1639.05Anticodon-binding domain-containing protein n=1 Ta... [more]
A0A150FZM8_GONPE1.840e-1638.78AD domain-containing protein n=1 Tax=Gonium pector... [more]
A0A836BVG9_9CHLO5.830e-1637.76AD domain-containing protein n=1 Tax=Edaphochlamys... [more]
K0TED1_THAOC3.040e-1543.62AD domain-containing protein n=1 Tax=Thalassiosira... [more]
M1V5U3_CYAM11.510e-1435.05AD domain-containing protein n=2 Tax=cellular orga... [more]
A0A4P9XH48_9FUNG1.600e-1439.00Anticodon-binding domain-containing protein n=1 Ta... [more]
A0A077WPF1_9FUNG2.120e-1434.65AD domain-containing protein n=1 Tax=Lichtheimia r... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12463contigEcto-sp13_S_contig12463:1..2186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score241.5
Seed ortholog evalue2e-61
Seed eggNOG ortholog2880.D7G4D1
Model size351
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Anticodon-binding domain
EggNOG OGs2E9FP@1,2SFTQ@2759
Ec32 ortholog descriptionNovel Sm-like protein with long N- and C-terminal domains.
Ec32 orthologEc-00_007340.1
Cds size351
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462663.63786-CDS-Ecto-sp13_S_contig12463:0..561681462663.63786-CDS-Ecto-sp13_S_contig12463:0..56Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12463 1..56 +
1681462663.6482017-CDS-Ecto-sp13_S_contig12463:1042..11621681462663.6482017-CDS-Ecto-sp13_S_contig12463:1042..1162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12463 1043..1162 +
1681462663.6589115-CDS-Ecto-sp13_S_contig12463:1474..16041681462663.6589115-CDS-Ecto-sp13_S_contig12463:1474..1604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12463 1475..1604 +
1681462663.668147-CDS-Ecto-sp13_S_contig12463:2141..21861681462663.668147-CDS-Ecto-sp13_S_contig12463:2141..2186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12463 2142..2186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12463.2041.1prot_Ecto-sp13_S_contig12463.2041.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12463 1..2186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12463.2041.1

>prot_Ecto-sp13_S_contig12463.2041.1 ID=prot_Ecto-sp13_S_contig12463.2041.1|Name=mRNA_Ecto-sp13_S_contig12463.2041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
DVVPGAPVVDDCMALPNISGRELDRKENKALQEATKAWAQINPGATNEGQ
AIFDLFTKTLDCSWSDQSIVILESVRIDPPYTADSCRSLDGDKPGLDRAL
LMLGKFRKQLEGPKSG*
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mRNA from alignment at Ecto-sp13_S_contig12463:1..2186+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12463.2041.1 ID=mRNA_Ecto-sp13_S_contig12463.2041.1|Name=mRNA_Ecto-sp13_S_contig12463.2041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12463:1..2186+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGTGGTGCCCGGAGCTCCCGTGGTGGACGACTGCATGGCGTTGCCGAA
CATCAGGTGCGAAAGCATGCTGCTTGGTGTGTGGGTCTCTCCTTGGACTC
CTGTGTGAAAGGTGCAGGGAGACCCATGTGTGTGTGCTGTGTAGCATGCC
AGGGCCGCCCCGCCCCACCGCTACAACCTACACCCGAGAGAAGGTCGACC
ACCGTACAGTAGGAAAGTTAAGTATGCTGATACTTCACTACAGCGGCTCT
CTTTGCCTGACGTGACCTTGTTACATCTATCGAACACAACTCGAGCGTGT
TGGATCTTCGACGCTCCTCGGTCTCTCTCTCTCCATCGCAATAGCCCGAA
AGTGTTTGAAATGATTGTTCCTTATCGGGAGAACAAGTTTGACGAGCAGC
ATCTACATAGAATGTCTGCCGTTAAACTTTCATGTAACTGTACCTAACGA
GACGCACATCAATGTTTGGGTTTTTGCGCGTGGGTGTACAGCCCGGTTAG
GTTTGTGATCGTGCGTGTTACTTTGTGGTGACTGCCCCTACAGCAGGTCG
TCCGCTCTCTCTCTGTCAAGCTCAACGGTCGAGGTAGACTATGTAGCTTT
GTAGCTTAGCTCCAGATGCGTGAAACGTTACAACAGTGTGGAAAAGACTG
TAAATTTAGTGTGTAGCGCTCGACGTTGTAGCCGTAGGTAGTGGCGGATC
ACCTCACCACCAACAAGGGTGGTATGTGTTGTGTGTATTCGTCCCATCTA
TCTGGGAGTACTACCACCCGGTAGACGCCAATCTACACTTTGCGGTAAGT
CTACAATGTGTTTCACGCACCAGTCGGAGCGTACGGCACCAAAAACCGGA
TGTTTCGTTCTTCTTCAACTCTCTTCGTGCGGCCCTTGCCTTCAATCTTC
GATTGTTGACGCGAGAAGGGTTCAGCGGTTCTTGCCCTCTTATGCGTGTT
TGCTCACGACCAAGCGGTGCAAATAAACCAACATACCATTCGGTTTGGAA
CACCTAAATTACCTTGCCTGTTTTTGTGTCGTCGAATCTCAGCGGCCGGG
AGTTGGACAGGAAGGAGAACAAGGCACTCCAGGAAGCGACAAAGGCATGG
GCACAGATCAATCCGGGCGCCACCAACGAAGGACAAGCCATTTTCGACCT
TTTCACCAAGACGTGCGTATGTTTTAGTATTATTCGCAATATCTAGCATC
GACCGCGTTGACCGGCTGACCAATGTGCGTGCTGTGTGCCTTGCAGTTGT
ATCGCACCTCCTGAAGATGCCGTCAGACGTGTATCCCTGGTTGTTGGAAC
GTGTTACATGACCATCTCCGCAGACTACCTAGAGGCAGAACCGCGAGACT
AGGACATCGTACTGCTACTTCGAATCCAAAGAAAGAACCTGCGTCGTTTC
TCCACGTGTCATACACGGAACTCGTTTCGCGTCATCGATCCTGAGCATCG
ACGCCCACTCTCCCTATGTTTCAGTCTGGACTGCTCGTGGAGCGATCAGA
GCATCGTGATCTTGGAGTCCGTGAGGATAGACCCCCCCTACACGGCTGAT
AGTTGTCGCAGCTTGGATGGAGACAAGCCAGGCCTCGACAGAGCGCTTCT
AATGGTGAGACAAGAGATGTAGAGAAGAGGTGCTTGCTCTGAAACGCACA
TGTTTCAAGTCGACTTCCCGCTATCCCCACCCTTCAAGAGTACCGAATGA
GGAGGTAGCCGGATAAATTCAGAGGACAGCGACGATTGGGCCGCGTCTCG
AGGATTGACCTGGTGGGGTGGACTCGTAGTACAGGAAAAGACGACCCGAC
AATCGCGTTCTTCGTCGTCTAGACTCAGGTCGTGAAACGCTGCATGCCAT
ACCGCTGTATAAGAAGGCACAGAGGAACACCACCAAAATCTCATCCGATC
TCGTTTTCGTTGGTCTGACGTGAAATATCAACAGAGGTTATACTTTCGGG
GGGCCCCACATGTTGTGCATTCATTGATGGGCCTCTTCGTTTCGTAACGT
GGAGACCACAAGGTCGAGGAGAAAAAGGATCGATCATGCTGTCGAATTTG
AACACCGTATGCATACGTACGTTTGCATTTCGGATTTTTTACGACTTTAC
CAACGTTTACTTTGTCCGCCCGTGCGCCCTTTTCCTTTCAGCTGGGCAAA
TTTCGAAAACAGCTGGAGGGGCCGAAGTCGGGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12463:1..2186+

>mRNA_Ecto-sp13_S_contig12463.2041.1 ID=mRNA_Ecto-sp13_S_contig12463.2041.1|Name=mRNA_Ecto-sp13_S_contig12463.2041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12463:1..2186+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGTGGTGCCCGGAGCTCCCGTGGTGGACGACTGCATGGCGTTGCCGAA
CATCAGCGGCCGGGAGTTGGACAGGAAGGAGAACAAGGCACTCCAGGAAG
CGACAAAGGCATGGGCACAGATCAATCCGGGCGCCACCAACGAAGGACAA
GCCATTTTCGACCTTTTCACCAAGACTCTGGACTGCTCGTGGAGCGATCA
GAGCATCGTGATCTTGGAGTCCGTGAGGATAGACCCCCCCTACACGGCTG
ATAGTTGTCGCAGCTTGGATGGAGACAAGCCAGGCCTCGACAGAGCGCTT
CTAATGCTGGGCAAATTTCGAAAACAGCTGGAGGGGCCGAAGTCGGGCTG
A
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