prot_Ecto-sp13_S_contig8853.20346.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8853.20346.1
Unique Nameprot_Ecto-sp13_S_contig8853.20346.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length436
Homology
BLAST of mRNA_Ecto-sp13_S_contig8853.20346.1 vs. uniprot
Match: A0A6H5L4R0_9PHAE (RNase H type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R0_9PHAE)

HSP 1 Score: 662 bits (1708), Expect = 7.130e-231
Identity = 396/408 (97.06%), Postives = 397/408 (97.30%), Query Frame = 0
Query:   29 MVKKVPACYGIRKGRGAPVVVHSWAEVVAKTNGFPGADFRKFKTPEEATDYANLVDEGGGLNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPSTGVVNTAPNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXIVPTLPGIGGSAGTTVASTSAAPAPVTLPPPSLKPLSILPGATDAYPHAPASAASASAVPRSIEEAXXXXXXXXXXXXXXXXXXDARASIAAGGGVTSTSGLKVPDGQAARAMWASLATGSLAESSPPRFLVHLASWRKTGADLGAVAAIVQEEGMFKRLT 436
            MVKK+PACYGIRKGRGAPVVVHSWAEVVAKTNGFPGADFRKFKTPEEATDYANLVDEGGGLNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPSTGVVNTAPNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXIVPTLPGIGGSAGTTVASTSAAPAPVTLPPPSLK  SILPGATDAYP  PASAAS SAVPRSIEEA  XXXXXXXXXXXXXXXXDARASIAAGGGVTSTSGLKVPDGQAARAMWASLATGSL ESSPPRFLVHLASWRKT  DLGAVAAIVQEE MFKRLT
Sbjct:    1 MVKKLPACYGIRKGRGAPVVVHSWAEVVAKTNGFPGADFRKFKTPEEATDYANLVDEGGGLNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPSTGVVNTAPNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXIVPTLPGIGGSAGTTVASTSAAPAPVTLPPPSLKXPSILPGATDAYPPPPASAASVSAVPRSIEEAREXXXXXXXXXXXXXXXXDARASIAAGGGVTSTSGLKVPDGQAARAMWASLATGSLTESSPPRFLVHLASWRKTETDLGAVAAIVQEERMFKRLT 408          
BLAST of mRNA_Ecto-sp13_S_contig8853.20346.1 vs. uniprot
Match: D7FZY9_ECTSI (Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY9_ECTSI)

HSP 1 Score: 590 bits (1521), Expect = 4.590e-207
Identity = 359/392 (91.58%), Postives = 360/392 (91.84%), Query Frame = 0
Query:   55 VVAKTNGFPGADFRKFKTPEEATDYANLVDEGGGLNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPSTGVVNTAPNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXIVPT----------LPGIGGSAGTTVASTSAAPAPVTLPPPSLKPLSILPGATDAYPHAPASAASASAVPRSIEEAXXXXXXXXXXXXXXXXXXDARASIAAGGGVTSTSGLKVPDGQAARAMWASLATGSLAESSPPRFLVHLASWRKTGADLGAVAAIVQEEGMFKRLT 436
            +V  TNGFPGADFRKFKTPEEATDYANLVDEGGGLNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPSTGVVNTAPNAA XXXXXXXXXXXXXXXXXXXX   XXX              LPGIGGSAGTTVASTSAAPAPVTLPP SLKP SILPGATDAYP  P SAASASAVPRSIEEA     XXXXXXXXXXXXXDARASIAAGGGVTSTSGLKVPDGQAARAMWASLATGSLAESSPPRFLVHLASWRKT  DLGAVAAIVQEEGMFKRLT
Sbjct:    4 LVRLTNGFPGADFRKFKTPEEATDYANLVDEGGGLNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPSTGVVNTAPNAAAXXXXXXXXXXXXXXXXXXXXPAAXXXXXXXXXXXXXXXXXLPGIGGSAGTTVASTSAAPAPVTLPPASLKPPSILPGATDAYPPPPVSAASASAVPRSIEEAREVAAXXXXXXXXXXXXXDARASIAAGGGVTSTSGLKVPDGQAARAMWASLATGSLAESSPPRFLVHLASWRKTETDLGAVAAIVQEEGMFKRLT 395          
BLAST of mRNA_Ecto-sp13_S_contig8853.20346.1 vs. uniprot
Match: A0A6U1LVX6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LVX6_9STRA)

HSP 1 Score: 134 bits (337), Expect = 4.740e-33
Identity = 91/235 (38.72%), Postives = 118/235 (50.21%), Query Frame = 0
Query:   37 YGIRKGRGAPVVVHSWAEVVAKTNGFPGADFRKFKTPEEATDYANLVDEGGGLNPAPA-------------GW---------------------------STLWFDGGCRGNPGPSGAGAVIF-NDS-EKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKS 229
            Y I  GR  P +V +W E   +  GF GA F+ F    EA  +  +      L  +P               W                             ++FDG  RGNPG  GAGAVI+ +DS E +L+ GY+YLGE  TNNEAEY + +LGL+AAA   I  L V GDSMLVI Q  GKW+V+A  L+ LH  A ++++      +  HVPR+ N  AD LAN A+DSKS
Sbjct:    7 YAIANGRNGPKIVRTWKECSQEVQGFSGAVFKGFSEQAEAETFLLMYGVSADLQESPGEENKSSQRPNLAKAWVEQHGGARDPLEDEMEEKAPEKPAQDRPVMFFDGASRGNPGEGGAGAVIYTSDSFENQLWRGYRYLGEC-TNNEAEYTAFLLGLQAAADAGIQNLKVCGDSMLVINQATGKWKVNAENLMPLHENAKKLIRTMP-GLSLRHVPREENTVADGLANQALDSKS 239          
BLAST of mRNA_Ecto-sp13_S_contig8853.20346.1 vs. uniprot
Match: A0A535LZB1_9CHLR (Ribonuclease HI family protein n=3 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535LZB1_9CHLR)

HSP 1 Score: 116 bits (290), Expect = 4.500e-27
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = 0
Query:   99 LWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSK 228
            L  DGG RGNPGP+  G VI +D  ++L + +K+LG   TNN+AEY+++I GLKA        L V  DS LV++Q+ GKW+V  P+L GLHRQA++++KQ   K T  HV R+ N RAD L N+A+D K
Sbjct:   41 LRADGGARGNPGPAALGVVIEDDQGEKLRTFHKWLGVA-TNNQAEYQALIEGLKAMKDWEFDHLDVYMDSKLVVEQVNGKWKVKEPELQGLHRQATDLLKQFGDKVTVQHVAREENRRADKLVNMAIDEK 169          
BLAST of mRNA_Ecto-sp13_S_contig8853.20346.1 vs. uniprot
Match: A0A7S2KCF7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.970e-27
Identity = 60/143 (41.96%), Postives = 88/143 (61.54%), Query Frame = 0
Query:   89 LNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMD 231
            LN +P     L FDGG RGNPG +GAG V++++   E++ G  YLGE  TNNEAEY  ++ GLK A  + ++ +VV+GDS L+++Q+ GK++  + KL+        ++K         H+PR+ N RAD LAN AMD +  D
Sbjct:    3 LNVSPYRTYVLQFDGGSRGNPGTAGAGMVLYDEVGHEVWHGRHYLGEHSTNNEAEYTGLLAGLKCARAIGVSNIVVQGDSELIVKQLQGKYKCKSSKLIPYFTSVKSLIKGFN-SFEVRHIPREQNFRADELANEAMDWREND 144          
BLAST of mRNA_Ecto-sp13_S_contig8853.20346.1 vs. uniprot
Match: A0A2G6F7E9_9BACT (RNase H type-1 domain-containing protein n=1 Tax=bacterium DOLZORAL124_38_8 TaxID=2044884 RepID=A0A2G6F7E9_9BACT)

HSP 1 Score: 115 bits (287), Expect = 5.820e-27
Identity = 71/148 (47.97%), Postives = 91/148 (61.49%), Query Frame = 0
Query:   79 YANLVDEGGGLNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMD 226
            +AN+ D        P     L  DGG RGNPG SGAGAVI+N  ++ L+ G KY G   TNN AEY  +ILGL+ A KL IT L V  DS L I+QM G W+V  P++  L +QA E+  Q+ L+ ++ H+PR  N +AD LAN AMD
Sbjct:    4 FANIDDR---FKEKPKKTGFLCADGGSRGNPGVSGAGAVIYNQDKEILWQGGKYTGIN-TNNFAEYHGLILGLQQAQKLEITHLQVFLDSKLAIEQMNGNWKVKHPQIKILFQQAKELA-QNFLEISFTHIPRAKNKKADELANRAMD 146          
BLAST of mRNA_Ecto-sp13_S_contig8853.20346.1 vs. uniprot
Match: A0A481ZGX4_9VIRU (Ribonuclease H n=1 Tax=Pithovirus LCPAC406 TaxID=2506599 RepID=A0A481ZGX4_9VIRU)

HSP 1 Score: 114 bits (285), Expect = 6.310e-27
Identity = 66/130 (50.77%), Postives = 89/130 (68.46%), Query Frame = 0
Query:   98 TLWFDGGCRGNPGPSGAGAVIF--NDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAM 225
            TL+FDG  +GNPGPSG G VI   +D +KELY G ++LG   TNN AEY+++I GLK A K +ITQLVVKGDS L+I+Q+  +W+  A  L  L ++  ++VKQ   K T+  +PR  N RAD L N+A+
Sbjct:    3 TLYFDGCSKGNPGPSGTGYVIIYDDDDDKELYFGMEFLGHA-TNNVAEYKALIFGLKDAQKNNITQLVVKGDSKLIIKQVSLQWKCKAEHLKPLLKECLQLVKQIG-KVTFEWIPRSENKRADNLCNLAL 130          
BLAST of mRNA_Ecto-sp13_S_contig8853.20346.1 vs. uniprot
Match: A0A4D9D7L8_9STRA (RNase H type-1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7L8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.670e-25
Identity = 60/130 (46.15%), Postives = 86/130 (66.15%), Query Frame = 0
Query:   99 LWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSK 228
            L+FDGG RGNPG SG GAV+F+   K+L++   +LG  KTNN+AEY ++  GL+ AA+  +  L  +GDS+LVI+QM G W+V    ++ LH Q   + ++ +   T+ HVPR  N  AD LAN+AMD +
Sbjct:  252 LFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRA-LTFQHVPRAENTVADALANVAMDKR 380          
BLAST of mRNA_Ecto-sp13_S_contig8853.20346.1 vs. uniprot
Match: A0A481ZBR2_9VIRU (Ribonuclease H n=1 Tax=Pithovirus LCPAC401 TaxID=2506595 RepID=A0A481ZBR2_9VIRU)

HSP 1 Score: 109 bits (272), Expect = 9.110e-25
Identity = 61/128 (47.66%), Postives = 84/128 (65.62%), Query Frame = 0
Query:   98 TLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAM 225
            TL+FDG  +GNPGP+GAG VI ND  +E+ SG K+LG   TNN AEY+++I GLK A   +IT L VKGDS L+I+Q+  +W+  +  L  L ++  E VK      T+  +PR  N RAD+L N+A+
Sbjct:   30 TLYFDGCSKGNPGPAGAGYVIVNDEGEEMMSGRKFLGNA-TNNIAEYKALIFGLKNAVSNNITNLNVKGDSKLIIEQVTLRWKCKSENLKPLLKKCLEYVKLFD-DVTFEWIPRDENKRADILCNLAL 155          
BLAST of mRNA_Ecto-sp13_S_contig8853.20346.1 vs. uniprot
Match: A0A6C0CSI6_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CSI6_9ZZZZ)

HSP 1 Score: 109 bits (272), Expect = 9.630e-25
Identity = 68/131 (51.91%), Postives = 85/131 (64.89%), Query Frame = 0
Query:   98 TLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQ-HQLKC-TWHHVPRKLNVRADLLANIAMD 226
            TL FDGG RGNPG +GAG VI+ D  +E+YSG   LG   TNN AEY+ + LGL  A K  I  L++KGDS+LV+ Q+  KW+V   K + L  Q + V K  +QL+  T  HV RK N RAD LAN+AMD
Sbjct:   27 TLMFDGGSRGNPGTAGAGFVIYKDM-REIYSGCAPLGHA-TNNYAEYKGLELGLTCAIKKGIESLIIKGDSLLVLNQITNKWKV---KSISLKEQYTNVKKLLNQLRSYTVEHVKRKYNKRADELANMAMD 152          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8853.20346.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4R0_9PHAE7.130e-23197.06RNase H type-1 domain-containing protein n=1 Tax=E... [more]
D7FZY9_ECTSI4.590e-20791.58Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6U1LVX6_9STRA4.740e-3338.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A535LZB1_9CHLR4.500e-2749.23Ribonuclease HI family protein n=3 Tax=Chloroflexi... [more]
A0A7S2KCF7_9STRA4.970e-2741.96Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A2G6F7E9_9BACT5.820e-2747.97RNase H type-1 domain-containing protein n=1 Tax=b... [more]
A0A481ZGX4_9VIRU6.310e-2750.77Ribonuclease H n=1 Tax=Pithovirus LCPAC406 TaxID=2... [more]
A0A4D9D7L8_9STRA5.670e-2546.15RNase H type-1 domain-containing protein n=2 Tax=M... [more]
A0A481ZBR2_9VIRU9.110e-2547.66Ribonuclease H n=1 Tax=Pithovirus LCPAC401 TaxID=2... [more]
A0A6C0CSI6_9ZZZZ9.630e-2551.91RNase H type-1 domain-containing protein n=1 Tax=v... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 98..240
e-value: 5.8E-38
score: 131.9
IPR037056Ribonuclease H1, N-terminal domain superfamilyGENE3D3.40.970.10coord: 34..82
e-value: 5.7E-9
score: 37.8
IPR011320Ribonuclease H1, N-terminalPFAMPF01693Cauli_VIcoord: 37..79
e-value: 8.9E-10
score: 38.7
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 101..223
e-value: 1.4E-23
score: 83.1
IPR002156Ribonuclease H domainPROSITEPS50879RNASE_Hcoord: 93..226
score: 11.885
NoneNo IPR availablePANTHERPTHR46387FAMILY NOT NAMEDcoord: 90..233
NoneNo IPR availablePANTHERPTHR46387:SF2POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 90..233
IPR009027Ribosomal protein L9/RNase H1, N-terminalSUPERFAMILY55658L9 N-domain-likecoord: 36..80
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 95..222

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8853contigEcto-sp13_S_contig8853:494..6082 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8853.20346.1mRNA_Ecto-sp13_S_contig8853.20346.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8853 494..6082 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8853.20346.1 ID=prot_Ecto-sp13_S_contig8853.20346.1|Name=mRNA_Ecto-sp13_S_contig8853.20346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=436bp
MRAHSRQAEHTSLSSPAIYLHARRWLRTMVKKVPACYGIRKGRGAPVVVH
SWAEVVAKTNGFPGADFRKFKTPEEATDYANLVDEGGGLNPAPAGWSTLW
FDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILG
LKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQH
QLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPSTGVVNTAPNAAAA
AAAAAAAAAAAAAAAAASAPAALPGIVPTLPGIGGSAGTTVASTSAAPAP
VTLPPPSLKPLSILPGATDAYPHAPASAASASAVPRSIEEAREVAAVAAA
TAAYAAVAADARASIAAGGGVTSTSGLKVPDGQAARAMWASLATGSLAES
SPPRFLVHLASWRKTGADLGAVAAIVQEEGMFKRLT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR037056RNase_H1_N_sf
IPR011320RNase_H1_N
IPR002156RNaseH_domain
IPR009027Ribosomal_L9/RNase_H1_N
IPR012337RNaseH-like_sf