prot_Ecto-sp13_S_contig8846.20334.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8846.20334.1
Unique Nameprot_Ecto-sp13_S_contig8846.20334.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length373
Homology
BLAST of mRNA_Ecto-sp13_S_contig8846.20334.1 vs. uniprot
Match: A0A6H5K262_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K262_9PHAE)

HSP 1 Score: 561 bits (1445), Expect = 3.690e-189
Identity = 344/372 (92.47%), Postives = 353/372 (94.89%), Query Frame = 0
Query:    1 DGRQLGATGRTTQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRDLVGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYDFAHPRLAPPLRPMVAHEVALEGMRQAEAAKLSHWEDAAFAKNAASDPFAAASSATRGTGHPSTTKAERPSGAQAASGQSTSEADENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATKFRESEKDRPAHPVPFWNRTNWISGRKDGTGSRRGAGHDAAAAKQSAAVDATHDTKSPSKSPVNKLRETPAAEAGSSSCSATDGHQATAAERSKRVRYEGVARRGTVEDEGAGSGKGKIPIRYQFRAGYTNAVRRPVRMRDLL 372
            DGRQLGATGRTTQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFR+LVGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGY+FAHPRLAPPLRPMVAHEVALEGMR+AEAAKLSH EDAAFAKN ASDPFAAASSATRGTGHP TTKA + SGAQAASG+STSEADEN   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA TKFR+SE DRPAHPVPFWNRTNWISGRKDGTGSRR AG DAAA KQSAA+D THDTKSPSKS VNKL ETPA +AGS SCSATDGHQATAAERSKRVR+EGVARRGTVEDE AGSGKGKIPIRYQFRAGYTNAVRRPVRMRDLL
Sbjct:  706 DGRQLGATGRTTQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRELVGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYEFAHPRLAPPLRPMVAHEVALEGMRKAEAAKLSHREDAAFAKNEASDPFAAASSATRGTGHPFTTKAGKSSGAQAASGKSTSEADENGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTKFRDSENDRPAHPVPFWNRTNWISGRKDGTGSRRDAGDDAAAVKQSAAIDFTHDTKSPSKSSVNKLCETPAVQAGSISCSATDGHQATAAERSKRVRHEGVARRGTVEDEEAGSGKGKIPIRYQFRAGYTNAVRRPVRMRDLL 1077          
BLAST of mRNA_Ecto-sp13_S_contig8846.20334.1 vs. uniprot
Match: UPI00033167F5 (chromosome transmission fidelity protein 18 homolog n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI00033167F5)

HSP 1 Score: 61.6 bits (148), Expect = 1.320e-6
Identity = 41/119 (34.45%), Postives = 63/119 (52.94%), Query Frame = 0
Query:   13 QALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRDLVGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYDFAHPRLAPPLRPMVAHEVALEGMRQAEA 131
            QALVLD L  L+DILAP LRP++  L S +E+ +   LVG +L+  LT+  +                  G   + LEP ++++ ++       P L    + ++AHEV +E MR+AEA
Sbjct:  644 QALVLDTLCLLLDILAPRLRPVSTQLFSTREKEQLASLVGTMLAYSLTYRQERTPE--------------GQYVYRLEPNVEEVCRFPELPVRKP-LTYQAKQLIAHEVEVEKMRRAEA 747          
BLAST of mRNA_Ecto-sp13_S_contig8846.20334.1 vs. uniprot
Match: UPI00187A781C (chromosome transmission fidelity protein 18 homolog isoform X1 n=14 Tax=Manis TaxID=9973 RepID=UPI00187A781C)

HSP 1 Score: 61.6 bits (148), Expect = 1.370e-6
Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = 0
Query:   11 TTQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRDLVGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYDFAHPRLAPPLRPMVAHEVALEGMRQAEA 131
            T QALVLD L  L+DIL P LRP++  L S +E+ +   LVG +L+  LT+  +                  G   + LEP +++L ++       P L    + ++AHE+ +E MR+AEA
Sbjct:  778 TPQALVLDTLCLLLDILTPKLRPVSTQLFSAREKQQLASLVGTMLAYSLTYRQERMPD--------------GLYVYRLEPNVEELCRFPELPTRKP-LTYQAQQLIAHEIEMEKMRRAEA 883          
BLAST of mRNA_Ecto-sp13_S_contig8846.20334.1 vs. uniprot
Match: UPI00140B0898 (chromosome transmission fidelity protein 18 homolog isoform X1 n=4 Tax=Catharus ustulatus TaxID=91951 RepID=UPI00140B0898)

HSP 1 Score: 61.2 bits (147), Expect = 1.800e-6
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 0
Query:    2 GRQLGATGRT-TQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRDLVGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYDFAHPRLAPPLRPMVAHEVALEGMRQAEAAKLS 135
            G   GA GR   Q LVLD+LS L+DI+AP LRP+N  L S +E+ +  +L+  +L+  LT+  +                  G   F L+P ++ + ++     A  +L+   + ++A E+ LE MR+AEA  L+
Sbjct:  728 GMAPGARGRAGLQELVLDVLSLLLDIIAPRLRPVNTQLYSLKEKQQLAELISTMLTYNLTYLQERLPE--------------GQYVFKLDPNVEAVCRFPALP-ARRQLSYQAKQLIAREIELEKMRRAEARNLA 847          
BLAST of mRNA_Ecto-sp13_S_contig8846.20334.1 vs. uniprot
Match: F6ZBE7_MOUSE (Chromosome transmission fidelity protein 18 homolog (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=F6ZBE7_MOUSE)

HSP 1 Score: 57.0 bits (136), Expect = 1.860e-6
Identity = 39/121 (32.23%), Postives = 62/121 (51.24%), Query Frame = 0
Query:   11 TTQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRDLVGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYDFAHPRLAPPLRPMVAHEVALEGMRQAEA 131
            T QALVLD L  L+D+LAP LRP++  L S  E+ +   LVG +L+  LT+  +                  G   + LEP ++++ ++       P L    + ++A E+ +E MR+AEA
Sbjct:    4 TPQALVLDTLCLLLDVLAPKLRPVSTQLYSAHEKQQLSCLVGTMLAYSLTYHQERTPD--------------GQYLYKLEPNVEEVCRFPELPARKP-LTYQAKQLIAREIEMEKMRRAEA 109          
BLAST of mRNA_Ecto-sp13_S_contig8846.20334.1 vs. uniprot
Match: A0A0B6ZQ96_9EUPU (RFC1 domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZQ96_9EUPU)

HSP 1 Score: 60.5 bits (145), Expect = 1.870e-6
Identity = 38/118 (32.20%), Postives = 64/118 (54.24%), Query Frame = 0
Query:   13 QALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRDLVGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYDFAHPRLAPPLRPMVAHEVALEGMRQAE 130
            Q LVLD+L  LMDIL PTLRP+N  L S +E+    ++V I+++  +T+  +  +               G   ++L+P +++L+K  G      +L    + M+A E+ LE MR++E
Sbjct:  180 QNLVLDLLPPLMDILQPTLRPVNTQLYSSREKEELSNVVKIMIAYNMTYHQEKTND--------------GQYVYSLDPNVEELVKLSGMK-QRKQLTYAAKQMIAREIELEKMRKSE 282          
BLAST of mRNA_Ecto-sp13_S_contig8846.20334.1 vs. uniprot
Match: B7QM52_IXOSC (Chromosome transmission fidelity factor, putative (Fragment) n=6 Tax=Ixodes TaxID=6944 RepID=B7QM52_IXOSC)

HSP 1 Score: 60.8 bits (146), Expect = 2.290e-6
Identity = 37/120 (30.83%), Postives = 63/120 (52.50%), Query Frame = 0
Query:   11 TTQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRDLVGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYDFAHPRLAPPLRPMVAHEVALEGMRQAE 130
            T   LVLD+L  L  IL PT+RP+N  L S +ER + + ++ ++ S  LT+                   A G  ++ALEP+ID++ ++ G     P+L    + ++A E+ +E MR+ +
Sbjct:  632 TGSTLVLDVLPWLTGILQPTIRPVNTQLFSAEERQKLQQVISVMASFNLTYHQART--------------ADGVYQYALEPSIDEVTRFPGVT-QPPQLTYATKQLIARELEVEKMRRGD 736          
BLAST of mRNA_Ecto-sp13_S_contig8846.20334.1 vs. uniprot
Match: L9KYH8_TUPCH (Chromosome transmission fidelity protein 18 like protein n=2 Tax=Tupaia chinensis TaxID=246437 RepID=L9KYH8_TUPCH)

HSP 1 Score: 60.8 bits (146), Expect = 2.350e-6
Identity = 40/119 (33.61%), Postives = 64/119 (53.78%), Query Frame = 0
Query:   13 QALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRDLVGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYDFAHPRLAPPLRPMVAHEVALEGMRQAEA 131
            QALVLD L  L+DIL P LRP++  L S +E+ +   LVG +L+  LT+  +                  G   +AL+P ++++ ++     AH  L    + ++AHEV +E MR+A+A
Sbjct:  703 QALVLDTLCLLLDILTPRLRPVSTQLYSAREKQQLAGLVGTMLAYNLTYRQERTPD--------------GQYVYALDPNVEEVCRFPELP-AHKPLTYQAKQLIAHEVEVEKMRRADA 806          
BLAST of mRNA_Ecto-sp13_S_contig8846.20334.1 vs. uniprot
Match: A0A5D6XHB8_9STRA (AAA domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHB8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.360e-6
Identity = 40/130 (30.77%), Postives = 73/130 (56.15%), Query Frame = 0
Query:   15 LVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRDLVGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYDF---AHPRLAP-PLRPMVAHEVALEGMRQAEAAKLSHWEDA 140
            L +D++  L+  L+PT+R LNP L + +E+A  + L+ ++ + GL+F P+                  G++++ALEPA+ +LL++ G +    AH  + P  ++ M+  EV L+ MR++EA+      DA
Sbjct:  702 LAVDVVPWLVATLSPTIRRLNPSLQTAEEKAMVQRLIELMAALGLSFRPKHLPD--------------GSEDYALEPALHELLEFRGGESDAAAHRAMLPLSVKKMITREVELQQMRRSEASSSHKKSDA 817          
BLAST of mRNA_Ecto-sp13_S_contig8846.20334.1 vs. uniprot
Match: A0A8C0K4R8_CANLU (Chromosome transmission fidelity factor 18 n=1 Tax=Canis lupus dingo TaxID=286419 RepID=A0A8C0K4R8_CANLU)

HSP 1 Score: 60.5 bits (145), Expect = 2.800e-6
Identity = 39/121 (32.23%), Postives = 64/121 (52.89%), Query Frame = 0
Query:   11 TTQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRDLVGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYDFAHPRLAPPLRPMVAHEVALEGMRQAEA 131
            T QAL+LD L  ++DILAP LRP++  L S +E+ +   LVG +L+  LT+  +                  G   + LEP ++++ ++       P L    + ++AHE+ +E MR+AEA
Sbjct:  491 TPQALILDALCLILDILAPKLRPVSTQLYSTREKQQLASLVGTMLAYSLTYRQERRPD--------------GQYIYRLEPNVEEVCRFPELPARKP-LTYQAKQLIAHEIEMEKMRRAEA 596          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8846.20334.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K262_9PHAE3.690e-18992.47AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
UPI00033167F51.320e-634.45chromosome transmission fidelity protein 18 homolo... [more]
UPI00187A781C1.370e-633.88chromosome transmission fidelity protein 18 homolo... [more]
UPI00140B08981.800e-632.59chromosome transmission fidelity protein 18 homolo... [more]
F6ZBE7_MOUSE1.860e-632.23Chromosome transmission fidelity protein 18 homolo... [more]
A0A0B6ZQ96_9EUPU1.870e-632.20RFC1 domain-containing protein (Fragment) n=1 Tax=... [more]
B7QM52_IXOSC2.290e-630.83Chromosome transmission fidelity factor, putative ... [more]
L9KYH8_TUPCH2.350e-633.61Chromosome transmission fidelity protein 18 like p... [more]
A0A5D6XHB8_9STRA2.360e-630.77AAA domain-containing protein n=1 Tax=Pythium bras... [more]
A0A8C0K4R8_CANLU2.800e-632.23Chromosome transmission fidelity factor 18 n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23389CHROMOSOME TRANSMISSION FIDELITY FACTOR 18coord: 11..372
NoneNo IPR availablePANTHERPTHR23389:SF3CHROMOSOME TRANSMISSION FIDELITY PROTEIN 18 HOMOLOGcoord: 11..372

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8846contigEcto-sp13_S_contig8846:3101..6637 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8846.20334.1mRNA_Ecto-sp13_S_contig8846.20334.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8846 3101..6637 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8846.20334.1 ID=prot_Ecto-sp13_S_contig8846.20334.1|Name=mRNA_Ecto-sp13_S_contig8846.20334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=373bp
DGRQLGATGRTTQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRDL
VGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYE
GYDFAHPRLAPPLRPMVAHEVALEGMRQAEAAKLSHWEDAAFAKNAASDP
FAAASSATRGTGHPSTTKAERPSGAQAASGQSTSEADENGGAAAAAAAKR
KGASTAAGSAGMKKTKTNKTPPPSPPAATKFRESEKDRPAHPVPFWNRTN
WISGRKDGTGSRRGAGHDAAAAKQSAAVDATHDTKSPSKSPVNKLRETPA
AEAGSSSCSATDGHQATAAERSKRVRYEGVARRGTVEDEGAGSGKGKIPI
RYQFRAGYTNAVRRPVRMRDLL*
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