mRNA_Ecto-sp13_S_contig8832.20320.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8832.20320.1
Unique NamemRNA_Ecto-sp13_S_contig8832.20320.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8832.20320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8832contigEcto-sp13_S_contig8832:5002..5468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size467
Hectar predicted targeting categorysignal anchor
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.3492823-UTR-Ecto-sp13_S_contig8832:5001..50441681464155.3492823-UTR-Ecto-sp13_S_contig8832:5001..5044Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8832 5002..5044 +
1681464155.3754666-UTR-Ecto-sp13_S_contig8832:5368..54681681464155.3754666-UTR-Ecto-sp13_S_contig8832:5368..5468Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8832 5369..5468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.360945-CDS-Ecto-sp13_S_contig8832:5044..53681681464155.360945-CDS-Ecto-sp13_S_contig8832:5044..5368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8832 5045..5368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8832.20320.1prot_Ecto-sp13_S_contig8832.20320.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8832 5045..5368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8832.20320.1

>prot_Ecto-sp13_S_contig8832.20320.1 ID=prot_Ecto-sp13_S_contig8832.20320.1|Name=mRNA_Ecto-sp13_S_contig8832.20320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MQLCVPLILRDDRRAFLALVPCGPAHGRIEHLFLRDERHAFLAVVPCSSA
YGLIVYLFWRDERRALLAFGTVQFSDGLIVYLFLRGEDRALLALVPCSSA
SGLIVYL*
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mRNA from alignment at Ecto-sp13_S_contig8832:5002..5468+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8832.20320.1 ID=mRNA_Ecto-sp13_S_contig8832.20320.1|Name=mRNA_Ecto-sp13_S_contig8832.20320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=467bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8832:5002..5468+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGTTTTAGAAGACTTGGTGTAACAAACAAAATAACCTGACTATGCAGC
TGTGCGTACCCCTCATCTTGAGGGATGACCGCCGCGCTTTCCTTGCATTG
GTACCATGCGGTCCAGCGCATGGCCGGATTGAACACCTCTTCTTGAGGGA
TGAACGCCACGCTTTCCTCGCAGTGGTACCGTGCAGTTCAGCGTATGGCC
TGATTGTGTACCTCTTTTGGAGGGATGAGCGCCGCGCGCTCCTCGCGTTT
GGTACCGTGCAGTTCAGCGATGGCCTGATTGTGTACCTCTTCTTGAGGGG
TGAGGACCGCGCTCTCCTCGCGTTGGTACCGTGCAGTTCAGCGTCTGGCC
TGATTGTGTACCTCTGATGCGCCACACTTTCGTCGCGTTGGTAAGCACCA
TCCATCAGCGTAGCTTCCATGTCCCTCTCGCCGCGAAAATAGGTGGAGTT
TGCTCAAAATGTGGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8832:5002..5468+

>mRNA_Ecto-sp13_S_contig8832.20320.1 ID=mRNA_Ecto-sp13_S_contig8832.20320.1|Name=mRNA_Ecto-sp13_S_contig8832.20320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8832:5002..5468+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCTGTGCGTACCCCTCATCTTGAGGGATGACCGCCGCGCTTTCCT
TGCATTGGTACCATGCGGTCCAGCGCATGGCCGGATTGAACACCTCTTCT
TGAGGGATGAACGCCACGCTTTCCTCGCAGTGGTACCGTGCAGTTCAGCG
TATGGCCTGATTGTGTACCTCTTTTGGAGGGATGAGCGCCGCGCGCTCCT
CGCGTTTGGTACCGTGCAGTTCAGCGATGGCCTGATTGTGTACCTCTTCT
TGAGGGGTGAGGACCGCGCTCTCCTCGCGTTGGTACCGTGCAGTTCAGCG
TCTGGCCTGATTGTGTACCTCTGA
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