mRNA_Ecto-sp13_S_contig8826.20313.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8826.20313.1
Unique NamemRNA_Ecto-sp13_S_contig8826.20313.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8826.20313.1 vs. uniprot
Match: D7FU40_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU40_ECTSI)

HSP 1 Score: 406 bits (1043), Expect = 1.120e-131
Identity = 209/223 (93.72%), Postives = 214/223 (95.96%), Query Frame = 1 
Query:  994 TGDTAVPGGAQATSSRGGTDSSENAHDVDSDLSAGASHPPAAGGSRKAEVAAEGAVLEEEATFESLGLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGKYVLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGRLRDHLQGPAAPALAKCRYLVLDEADRLLAPTFQG 1662
            TGD+ VPGG+QAT+SRGG  S EN HDVD +LSAGASHP AA GSRKAEVAAEGAVLEEEATFESLGLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGK VLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGRLRDHLQGPAAPALAKCRYLVLDEADRLLAPTF+G
Sbjct:   50 TGDSDVPGGSQATTSRGGKGSRENGHDVDPNLSAGASHPSAADGSRKAEVAAEGAVLEEEATFESLGLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGKDVLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGRLRDHLQGPAAPALAKCRYLVLDEADRLLAPTFEG 272
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BLAST of mRNA_Ecto-sp13_S_contig8826.20313.1 vs. uniprot
Match: A0A836CIA6_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIA6_9STRA)

HSP 1 Score: 266 bits (681), Expect = 1.590e-79
Identity = 130/185 (70.27%), Postives = 155/185 (83.78%), Query Frame = 1 
Query: 1108 PPAAGGSRKAEVAAEGAVLEEEATFESLGLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGKYVLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGRLRDHLQGPAAPALAKCRYLVLDEADRLLAPTFQG 1662
            P +A G R+A +  + + ++ + TF+SLGLCDWL  AC AMGFRRPTPVQ+HCIPAVL+GK VLGCAETGSGKTAAFALPILH LSKDPYG++AVVLTPTRELAVQI+EQF ALGA MGLRH VVIGG+ ++ Q + L+ RPHV++ATPGRLRDHLQG + P L+K +YLVLDEADRLL+  FQ 
Sbjct:   30 PASATGIREAAIVGDTSGVDTDTTFDSLGLCDWLQRACGAMGFRRPTPVQQHCIPAVLDGKDVLGCAETGSGKTAAFALPILHTLSKDPYGIYAVVLTPTRELAVQIAEQFEALGAPMGLRHAVVIGGMNMMAQGVELAKRPHVIIATPGRLRDHLQGASPPDLSKLKYLVLDEADRLLSMGFQS 214
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BLAST of mRNA_Ecto-sp13_S_contig8826.20313.1 vs. uniprot
Match: W7UCM8_9STRA (Atp-dependent rna helicase ddx49-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UCM8_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.880e-63
Identity = 107/157 (68.15%), Postives = 130/157 (82.80%), Query Frame = 1 
Query: 1189 LGLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGKYVLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGRLRDHLQGPAAPALAKCRYLVLDEADRLLAPTFQ 1659
            LGL  W+  AC AMGF+RPTPVQ  CIP++L+G+ V+GCAETGSGKTAAFALP+LH LS+DPYGVF +VLTPTRELA+QI+EQF ALGA +GLRH VVIGG  +++Q++ L+ RPHVVVATPGRL DHL+G A P L+K  +LVLDEADRL    F+
Sbjct:   69 LGLAPWIQGACNAMGFKRPTPVQEQCIPSILQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGVFGLVLTPTRELAIQIAEQFQALGAPLGLRHCVVIGGESMVQQAVELARRPHVVVATPGRLWDHLRGAAPPDLSKATFLVLDEADRLFCDGFE 225
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BLAST of mRNA_Ecto-sp13_S_contig8826.20313.1 vs. uniprot
Match: A0A484DY74_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DY74_BRELC)

HSP 1 Score: 212 bits (540), Expect = 1.670e-61
Identity = 101/160 (63.12%), Postives = 126/160 (78.75%), Query Frame = 1 
Query: 1177 TFESLGLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGKYVLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGRLRDHLQGPAAPALAKCRYLVLDEADRLLAPTF 1656
            +F +LG+  WL+  C+ MG R+PTPVQ HCIP +L G+ V+GCA+TGSGKTAAFALPILH LSKDPYG +A+VLTPTRELA QISEQF A G+ M +R  V++GGV +L+QSL L  RPH++VATPGRLRDHL     P ++  +Y+VLDEADRLL  +F
Sbjct:   51 SFLNLGVDPWLVKRCELMGIRQPTPVQSHCIPPILSGRDVIGCAQTGSGKTAAFALPILHTLSKDPYGPYALVLTPTRELAFQISEQFNAFGSSMAIRCAVIVGGVDMLKQSLTLQQRPHIIVATPGRLRDHLLRVEPPNISLIKYVVLDEADRLLDISF 210
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BLAST of mRNA_Ecto-sp13_S_contig8826.20313.1 vs. uniprot
Match: K3X673_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X673_GLOUD)

HSP 1 Score: 216 bits (550), Expect = 6.210e-60
Identity = 113/192 (58.85%), Postives = 144/192 (75.00%), Query Frame = 1 
Query: 1108 PPAAG--GSRKAEVAAEGAVLE-EEAT------FESLGLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGKYVLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGRLRDHLQGPAAPALAKCRYLVLDEADRLLAPTF 1656
            PPAA    S+ A VAA+  +++ E+AT      F +LGL  WL+  C+ +G R PTPVQ +CIP +L+G+ VLGCA+TGSGKTAAFALPILH LSKDPYG FAVVLTPTRELA QI++QF A G+ MG+R  V++GGV +L+Q+L L  RPH+++ATPGRL DHL  P  P LA  +++VLDEADRLL  +F
Sbjct:   24 PPAAATSSSKIAAVAADKVIVDGEDATSTMLISFLNLGLDPWLVKKCELVGIRHPTPVQANCIPPILDGRDVLGCAQTGSGKTAAFALPILHALSKDPYGPFAVVLTPTRELAYQIADQFNAFGSSMGVRCAVIVGGVDMLKQALELQNRPHIIIATPGRLHDHLLRPNPPNLALVKFVVLDEADRLLDVSF 215
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BLAST of mRNA_Ecto-sp13_S_contig8826.20313.1 vs. uniprot
Match: A0A812UIM1_SYMMI (DDX49 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UIM1_SYMMI)

HSP 1 Score: 204 bits (518), Expect = 9.040e-60
Identity = 91/144 (63.19%), Postives = 122/144 (84.72%), Query Frame = 1 
Query: 1192 GLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGKYVLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGRLRDHLQGPAAPALAKCRYLVL 1623
            GL  W+ ++CKAMGF++PTP+Q+ CIPA+LEG+ V+GCAETGSGKTAAFALP+L +LS+DPYG+F ++LTPTRELAVQI EQ  ALG+ +G+R  ++IGG+GI++Q +ALS  PH+V+ATPGRLR HL+  + P +A+ RYLVL
Sbjct:    1 GLNQWVCSSCKAMGFKQPTPIQQACIPAILEGRNVMGCAETGSGKTAAFALPMLQDLSEDPYGIFGIILTPTRELAVQIEEQIVALGSPVGVRTCLIIGGLGIIDQGVALSRMPHIVIATPGRLRHHLESASPPQIARTRYLVL 144
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BLAST of mRNA_Ecto-sp13_S_contig8826.20313.1 vs. uniprot
Match: A0A8C1XD47_CYPCA (RNA helicase n=4 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1XD47_CYPCA)

HSP 1 Score: 214 bits (545), Expect = 1.130e-59
Identity = 100/157 (63.69%), Postives = 126/157 (80.25%), Query Frame = 1 
Query: 1174 ATFESLGLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGKYVLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGRLRDHLQGPAAPALAKCRYLVLDEADRLL 1644
            ATFESLGLC+WL+  CK MG  RPTPVQ  CIPA+LEG+  +GCA+TGSGKTAAF LP+L +LS+DPYGVF +VLTPTRELA QI+EQF ALG  MGL+  +++GG+ ++ Q L LS +PHVVVATPGRL DH++     +L + ++L+LDEADRLL
Sbjct:    2 ATFESLGLCEWLIQQCKQMGISRPTPVQEKCIPAILEGRDCMGCAKTGSGKTAAFVLPVLQKLSEDPYGVFCLVLTPTRELAYQIAEQFRALGKPMGLKDCIIVGGMDMVTQGLELSKKPHVVVATPGRLADHIRSSDTISLNRIQFLILDEADRLL 158
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BLAST of mRNA_Ecto-sp13_S_contig8826.20313.1 vs. uniprot
Match: A0A5A9NE61_9TELE (RNA helicase n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NE61_9TELE)

HSP 1 Score: 213 bits (543), Expect = 1.960e-59
Identity = 100/157 (63.69%), Postives = 124/157 (78.98%), Query Frame = 1 
Query: 1174 ATFESLGLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGKYVLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGRLRDHLQGPAAPALAKCRYLVLDEADRLL 1644
            ATFES+GLCDWL+  CK MG  RPTPVQ  CIPA+LEG+  +GCA+TGSGKTAAF LP+L +LS DPYGVF +VLTPTRELA QI+EQF ALG  +GL+  +++GG+ ++ Q L LS +PHVVVATPGRL DH++      L K ++L+LDEADRLL
Sbjct:    2 ATFESVGLCDWLIQQCKEMGINRPTPVQEKCIPAILEGRDCMGCAKTGSGKTAAFVLPVLQKLSDDPYGVFCLVLTPTRELAYQIAEQFRALGKPLGLKDCIIVGGMDMVTQGLELSRKPHVVVATPGRLADHIRSSDTINLKKIQFLILDEADRLL 158
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BLAST of mRNA_Ecto-sp13_S_contig8826.20313.1 vs. uniprot
Match: A0A8K1C5K1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5K1_PYTOL)

HSP 1 Score: 212 bits (540), Expect = 2.140e-58
Identity = 101/160 (63.12%), Postives = 127/160 (79.38%), Query Frame = 1 
Query: 1177 TFESLGLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGKYVLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGRLRDHLQGPAAPALAKCRYLVLDEADRLLAPTF 1656
            +F +LGL  W++  C+ +G R PTPVQ +CIP +L+G+ VLGCA+TGSGKTAAFALPILH+LSKDPYG FAVVLTPTRELA QI++QF   G+ MG+R  V++GGV +L+Q+L L  RPHV++ATPGRL DHL  P  P LA  ++LVLDEADRLL  +F
Sbjct:   63 SFLNLGLDPWIVKKCELVGIRHPTPVQANCIPPILQGRDVLGCAQTGSGKTAAFALPILHKLSKDPYGPFAVVLTPTRELAFQIADQFNVFGSSMGVRCAVIVGGVDMLKQALELQERPHVIIATPGRLHDHLLRPNPPNLALIKFLVLDEADRLLDVSF 222
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BLAST of mRNA_Ecto-sp13_S_contig8826.20313.1 vs. uniprot
Match: A0A1X7UUQ6_AMPQE (RNA helicase n=3 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UUQ6_AMPQE)

HSP 1 Score: 209 bits (533), Expect = 3.240e-58
Identity = 98/166 (59.04%), Postives = 128/166 (77.11%), Query Frame = 1 
Query: 1162 LEEEATFESLGLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGKYVLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGRLRDHLQGPAAPALAKCRYLVLDEADRLLAPTFQ 1659
            + +  TF SLGL  WL+  C+ +GF+  TPVQ++CIP ++EG+  +G A+TGSGKTAAFALPILH LS+DPYG++A+VLTPTRELA QIS+QF  LG  +G++  V++GGV ++ Q+LALS RPH+VVATPGRL DHLQ      + K +YLVLDEADRLL   F+
Sbjct:    1 MADSCTFSSLGLSSWLVRQCEGLGFKEATPVQKNCIPPIMEGRDCIGSAKTGSGKTAAFALPILHSLSRDPYGIYALVLTPTRELAYQISDQFCVLGKHIGVKSEVIVGGVDMMVQALALSRRPHIVVATPGRLADHLQSTDTVFMEKIKYLVLDEADRLLEKCFE 166
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8826.20313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU40_ECTSI1.120e-13193.72DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A836CIA6_9STRA1.590e-7970.27DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
W7UCM8_9STRA1.880e-6368.15Atp-dependent rna helicase ddx49-like protein n=2 ... [more]
A0A484DY74_BRELC1.670e-6163.13Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
K3X673_GLOUD6.210e-6058.85Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A812UIM1_SYMMI9.040e-6063.19DDX49 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A8C1XD47_CYPCA1.130e-5963.69RNA helicase n=4 Tax=Cyprinus carpio TaxID=7962 Re... [more]
A0A5A9NE61_9TELE1.960e-5963.69RNA helicase n=1 Tax=Triplophysa tibetana TaxID=15... [more]
A0A8K1C5K1_PYTOL2.140e-5863.13Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1X7UUQ6_AMPQE3.240e-5859.04RNA helicase n=3 Tax=Amphimedon queenslandica TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8826contigEcto-sp13_S_contig8826:946..4978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score411.0
Seed ortholog evalue4.6e-112
Seed eggNOG ortholog2880.D7FU40
Preferred nameDDX49
Model size1665
KEGG koko:K14778
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003743,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008026,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009553,GO:0009561,GO:0009791,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010501,GO:0016070,GO:0016072,GO:0016281,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0022613,GO:0030490,GO:0030554,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042254,GO:0042274,GO:0042623,GO:0042802,GO:0042995,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090406,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0120025,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons5
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0340@2759
EC3.6.4.13
Cds size855
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8826.20313.1prot_Ecto-sp13_S_contig8826.20313.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8826 946..4168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464154.9636002-CDS-Ecto-sp13_S_contig8826:945..10001681464154.9636002-CDS-Ecto-sp13_S_contig8826:945..1000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8826 946..1000 -
1681464154.97539-CDS-Ecto-sp13_S_contig8826:1360..14451681464154.97539-CDS-Ecto-sp13_S_contig8826:1360..1445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8826 1361..1445 -
1681464154.985835-CDS-Ecto-sp13_S_contig8826:2152..22981681464154.985835-CDS-Ecto-sp13_S_contig8826:2152..2298Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8826 2153..2298 -
1681464154.9966652-CDS-Ecto-sp13_S_contig8826:2954..30581681464154.9966652-CDS-Ecto-sp13_S_contig8826:2954..3058Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8826 2955..3058 -
1681464155.007271-CDS-Ecto-sp13_S_contig8826:3703..41681681464155.007271-CDS-Ecto-sp13_S_contig8826:3703..4168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8826 3704..4168 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.0179863-UTR-Ecto-sp13_S_contig8826:4168..49781681464155.0179863-UTR-Ecto-sp13_S_contig8826:4168..4978Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8826 4169..4978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8826.20313.1

>prot_Ecto-sp13_S_contig8826.20313.1 ID=prot_Ecto-sp13_S_contig8826.20313.1|Name=mRNA_Ecto-sp13_S_contig8826.20313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=285bp
MYVTAVSTTGHVVPSFVIVLHRYVFRCNGKSKSASCGDDRHPWSLALHCR
SSPLSQRRTYRTGDTAVPGGAQATSSRGGTDSSENAHDVDSDLSAGASHP
PAAGGSRKAEVAAEGAVLEEEATFESLGLCDWLLTACKAMGFRRPTPVQR
HCIPAVLEGKYVLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTR
ELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGR
LRDHLQGPAAPALAKCRYLVLDEADRLLAPTFQG*
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mRNA from alignment at Ecto-sp13_S_contig8826:946..4978-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8826.20313.1 ID=mRNA_Ecto-sp13_S_contig8826.20313.1|Name=mRNA_Ecto-sp13_S_contig8826.20313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4033bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8826:946..4978- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGGGAGCCAGCCAGCAGCTAGAGCCAGCCAGCTTACCCACACGCTGAC
CTGACGCACACCACGCGTGATCCGGCTTGCCTCGAGACGAGAAGCGTGTG
ATGTCGACTCTGTTCGCTAAAAAGCGCAGCTCTTCGGGAAGGAAGCGCCC
TCGTCCATCCGCTGGAGAGGGAGGACTCGGTGCTGCTGCTGCCTCCGCCG
GCAAGGAGGTCGTGGATGGCGCTGCTTCAAAGACGACCAACGCGGGGTGA
GACACTTGTTGCTCTCTTGGCGTACGGCTGTACGATTATCTCGGCTTGAT
GTGGATTCGCTTTCAGCTCTGTGGCAGTTCTATTCGTTGGGCATGCATGG
ATGGAGGGAGGGTGGTGATGCTGAGCGACTCTCATGCTACGCGTGGTTGA
GGATGCCCGTGTTTGGTGTGTGCAGCAGGGTACGGGTAGCGTTTCGTCGT
CGGCAACGAAGCGATCACCGACGTCCGAAGTACTGCTGTAATATTGACCG
GTTTGGTGTCGGCTATATGTCGTGGAATATGCCGTAGTGAGTCCGGCCAT
GGTTGCATTCGCCACACGATGATGTGCCGTTGGATGTCGCAACAACCGCC
GATGGTGGAACACGGCATTATGACATGCGGCGCGACTAAAACAACTGCTG
TCGTTCCGATGACCCCTCCCTTTCAGGTAGCTGCTCCAAGCACGCCAGCA
TCCAAATCAAGGGTGTACTGCTGCTGTGGCCGATCGCGAAGATCCTCGCG
ATACTGCGATATCTTCCTCTTCAGTTGTCACCCTGAACCTTTCGCTGCTT
AGGACCAACTATGTATGTCACCGCGGTCTCCACCACGGGACATGTTGTCC
CATCATTCGTAATCGTGCTCCACCGATACGTCTTTCGCTGTAACGGAAAA
AGTAAAAGTGCCTCGTGTGGTGATGACAGACATCCTTGGTCGCTGGCACT
TCATTGCCGCAGTTCTCCCCTCTCTCAACGACGGACGTACAGGACTGGAG
ATACCGCTGTTCCCGGAGGAGCCCAGGCCACCTCTAGTCGCGGTGGCACG
GATAGCAGCGAGAACGCCCACGACGTTGATTCCGACCTCTCCGCCGGAGC
TTCCCACCCGCCAGCAGCCGGCGGCAGCCGGAAGGCGGAAGTAGCAGCGG
AGGGGGCGGTGCTTGAGGAGGAGGCGACCTTTGAGTCGCTCGGGCTGTGC
GATTGGCTGCTGACGGCTTGCAAGGCCATGGGCTTTCGAAGACCTACCCC
CGTGCAGCGACACTGCATCCCTGCGGTGAGGGGAATAAACACGCACGCTA
CCGCATCTCGTGACGAATCTTGATTTACACGGCGAGGTTCTCTGCAGTGA
CAACTGCCACGTTGTTGTGTACCACCGCTCGCGGTTTCTCTGCATGCAGA
CGTTCTGAATTTGGACGGAATCTTAAACCCGTAAGTCACTTCTCCTCCCC
GGAATCCAGGCACGTCTCTGTCTTTGCTTTAAATATCATGTTTTTGGCTT
TCTGAAAATGATCTCGTTGCGTTTTCTCCCGGCGGATTGTACCTGCCGGT
CCGTCCATGATTCTGTCGGCGGCAAGTGCGGGCAGAAGGTGGTGGGGTAC
GAGGAACTTCTCTGCTCAAGTGATGTCCTCCTCACACCTTCAAAACGGAT
TTAATTGTAGTAGTAGTAACGAGACCCACGTTCTTCTTCTCTCTCTATGT
CTCTCTCTCTCACACATGCACACACACCCCTTCTCCCTCTCTTCCCATCC
ATCGCTTTATCCTCCAGTTTCCTTACGGCAACCAATATACCGGGCACACC
TACAGAAGAACCTGCCCGTAACATGACCAATCCCCTTTTCCCAGGCACAA
CATTTCGTCGTGTTTAGTTGAAACCCTGCCGGCCTTGTCTTTCTATCCCT
GGGCCATCTCTTTCCGTCAGGTTTTAGAGGGGAAGTACGTTTTGGGGTGT
GCAGAGACGGGTTCCGGCAAGACCGCTGCCTTTGCACTGCCAATCCTTCA
CGAGCTCAGCAAGGACCCCTACGGGTGAGGGGCTGAAACGGCAGTGTTTT
GTGGTAATCTTCCCTCGAAGGGGAGGAGGAGCGTCGCCCAAACGTGGCCG
TGATTAAGTTGACTGCGGCGTCGGGTTGTGGAGATATGATCGGTTGGGTG
TAGGGCACAATGCCACCGCGTCGTAGCTGCTCATCTCGGTTGAGCTCAAC
AAGGACCCCAGTGATGAGGGGTGCACAAGGAACCCTCACGTTTCCAAGCA
AGTTGCATGGGACCTTGATCTCCGCGAGAGAGGAAGAACAGTACACACCT
AAGGTGGTAAGATGGGGAATACTATATGCCTGACTGGAAATAGGTTTGCG
TTTGTTCTTGTTGAGTTTACCGTGCGTTGCATAACACAACACCCCCCCTG
AAATGATTTTGAAAGCTCGACTGCTCTGCAGCAAAAAGAGTGGTGGTGCC
GAAAATGGCGGCGTCGGAAACGTCTCATCGTGAGCTTTCCGAAATCACAC
CACTTTGGTTTTGCCATCCTCTACCGAGCTTGAAAAGCGATTCGACCCAG
TGCATGTGGTGTCTGCTGCTACCCACGGTATTTCCACTGTAATGGCGGAA
CACGCAGCTCACTTACACCACGTTCAGTTTGCCTCCATCTGGTCACGCGC
TAACACCGCACGTCCTTGTATCGCGTGCAGGGTGTTCGCAGTGGTGTTGA
CCCCGACGCGAGAGCTAGCGGTTCAGATTTCGGAACAGTTCGGCGCCCTC
GGAGCGCTCATGGGACTGCGCCACACCGTGGTCATCGGGGGCGTCGGCAT
CTTGGAGCAGAGCTTGGCACTGTCAGGTGCGACGATGCCCGCCCTTCGCG
TGAGTCGTTCTGCGTCTGAGCCCACGTCTCTGCGGTTTGCCTCCCACCGC
TTTTTCCAAACGATTCCGGTAGACTCGCTTATACTTGCGCTGCGCGCTCT
CGAGTGATGTTGTTCTTGGGTCGCTCTCCTCGAGTTGTTGCGTTGTTTTC
TGACATATACTTGTTCATGTGATCATGATACCTGACTTCTCGTACGTCCG
TGTATTTGTGCGGTTGTATGCAGTCTCATTATCCCTTTGTATAATCTTAG
ATGCCGGAGCGCATCGAAGAGGGGTGTACGTGTGTATGGTTAGTCGTTGG
CTCACTGGCCAACCCATTCTGGGGTCCTCGTGAGGCGGTGCCTTCATGGA
GGAAGGATCCGGCGCCGCGGAGTACGTACGTCGAGTGCGCCCGTGGTAGC
CATGGTCCTGCCAAGCGCCTTTAGCCTCTTTTGTACTTCGTGCCAGGCGT
TTTGAGGAAGGAATTCACACCAACAGATGCAGCAGCATCCAAAAGCTTTT
AAGGGTGCGGCTGCGAGCGTTCGCCGGCGTCTTCTAGGTGGGAGCTCGGT
GCCGTTTCGAACGCCCTACGGGGTAAAGCCTTTCGTGTACCCGACCATCC
TCTTGGCCGAACGCTCCTTCTCGAGATGATGACTTTCGCTCTCTCCTTGC
CCTCCCGCGTGCCTTTCTCTGCCTTTATTGAAGGACGGCCCCACGTCGTG
GTGGCGACCCCAGGCAGGCTGCGGGACCACTTGCAAGGCCCGGCTGCGCC
GGCCTTGGCAAAATGTCGGTGAGAAATGGGGTGGGGTTTATACTCCTGCG
ATATTGTTCTCGCCGTGTTCCGTTAGACCCCCGCAAAGCTGTAGCGGAGG
ACGCTAGGGTTTCCACACAGGTAGTACTGGGGGAGCCGCGACTAGGGGGA
GGGGGGTGGGCGTACTCATGTTTGCATGGCATGCCTTGGCGGTTAGACCG
TTGACCACGCGTCCTCGAGAGGACGGAGCGTTGTTCCTACACACGAACAG
TCATGTATACCATGACGAAAACTGACGTTTATTCGCAGTGGTCAGTCGGT
CTGTGTTGTCGATGCAAATATCGGCAAACAGTTGAAGAAATGCAGGAAAA
CAATCCTACTCCTACTTTGCCTTGGCAGGTACCTGGTTCTGGATGAAGCG
GATCGTCTTCTCGCACCAACATTTCAAGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8826:946..4978-

>mRNA_Ecto-sp13_S_contig8826.20313.1 ID=mRNA_Ecto-sp13_S_contig8826.20313.1|Name=mRNA_Ecto-sp13_S_contig8826.20313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=855bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8826:946..4978- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATGTCACCGCGGTCTCCACCACGGGACATGTTGTCCCATCATTCGT
AATCGTGCTCCACCGATACGTCTTTCGCTGTAACGGAAAAAGTAAAAGTG
CCTCGTGTGGTGATGACAGACATCCTTGGTCGCTGGCACTTCATTGCCGC
AGTTCTCCCCTCTCTCAACGACGGACGTACAGGACTGGAGATACCGCTGT
TCCCGGAGGAGCCCAGGCCACCTCTAGTCGCGGTGGCACGGATAGCAGCG
AGAACGCCCACGACGTTGATTCCGACCTCTCCGCCGGAGCTTCCCACCCG
CCAGCAGCCGGCGGCAGCCGGAAGGCGGAAGTAGCAGCGGAGGGGGCGGT
GCTTGAGGAGGAGGCGACCTTTGAGTCGCTCGGGCTGTGCGATTGGCTGC
TGACGGCTTGCAAGGCCATGGGCTTTCGAAGACCTACCCCCGTGCAGCGA
CACTGCATCCCTGCGGTTTTAGAGGGGAAGTACGTTTTGGGGTGTGCAGA
GACGGGTTCCGGCAAGACCGCTGCCTTTGCACTGCCAATCCTTCACGAGC
TCAGCAAGGACCCCTACGGGGTGTTCGCAGTGGTGTTGACCCCGACGCGA
GAGCTAGCGGTTCAGATTTCGGAACAGTTCGGCGCCCTCGGAGCGCTCAT
GGGACTGCGCCACACCGTGGTCATCGGGGGCGTCGGCATCTTGGAGCAGA
GCTTGGCACTGTCAGGACGGCCCCACGTCGTGGTGGCGACCCCAGGCAGG
CTGCGGGACCACTTGCAAGGCCCGGCTGCGCCGGCCTTGGCAAAATGTCG
GTACCTGGTTCTGGATGAAGCGGATCGTCTTCTCGCACCAACATTTCAAG
GGTGA
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