mRNA_Ecto-sp13_S_contig8822.20309.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8822.20309.1
Unique NamemRNA_Ecto-sp13_S_contig8822.20309.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8822.20309.1 vs. uniprot
Match: A0A6H5KGP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP8_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.420e-72
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 1 
Query:    1 MVEAISCAHTGLAARMLEAGVDPNIPSDGRGGEAPVYLLGLSCFLGRPEMVRLLLKHGASVDKCMRGGETPLQTAIGEGERGIVAQLVAAGADVNLRTGGSGRTALHKAACQGDVQ 348
            MVEAISCAHTGL ARMLEAGVDPNIPSDGRGG+APVYLLGLSCFLGRPEMVRLLLKHGASVDKCMRGGETPLQTAIGEGERGIVAQLV AGADVNL+TGGSGRTALHKAACQGDVQ
Sbjct:   13 MVEAISCAHTGLVARMLEAGVDPNIPSDGRGGKAPVYLLGLSCFLGRPEMVRLLLKHGASVDKCMRGGETPLQTAIGEGERGIVAQLVDAGADVNLKTGGSGRTALHKAACQGDVQ 128
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BLAST of mRNA_Ecto-sp13_S_contig8822.20309.1 vs. uniprot
Match: D7G159_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G159_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 5.720e-68
Identity = 111/116 (95.69%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:    1 MVEAISCAHTGLAARMLEAGVDPNIPSDGRGGEAPVYLLGLSCFLGRPEMVRLLLKHGASVDKCMRGGETPLQTAIGEGERGIVAQLVAAGADVNLRTGGSGRTALHKAACQGDVQ 348
            MVEAISCAHTGLAARMLEAGVDPNIPSDGRGG+APVYLLGLSCFLGRPEMVRLLL+HGASVDK MRGGETPLQTAIGEGERGIVAQL+AAGADVNL+TGGSGRTALHKAACQGDVQ
Sbjct:   13 MVEAISCAHTGLAARMLEAGVDPNIPSDGRGGKAPVYLLGLSCFLGRPEMVRLLLQHGASVDKRMRGGETPLQTAIGEGERGIVAQLLAAGADVNLKTGGSGRTALHKAACQGDVQ 128
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BLAST of mRNA_Ecto-sp13_S_contig8822.20309.1 vs. uniprot
Match: A0A428UDF1_9HYPO (Uncharacterized protein n=1 Tax=Fusarium sp. AF-4 TaxID=1325735 RepID=A0A428UDF1_9HYPO)

HSP 1 Score: 54.7 bits (130), Expect = 9.920e-7
Identity = 42/110 (38.18%), Postives = 57/110 (51.82%), Query Frame = 1 
Query:   34 LAARMLEAGVDPNIPSDGRGGEAPVYLLGLSCFLGRPEMVRLLLKHGASVDKCMR--------GGETPLQTAIGEGERGIVAQLVAAGADVNLRTGGSGRTALHKAACQG 339
            +  R+LE G   N+ +    G A +YL   + +  +PE+VRLLL+HGA VD+  +        GG T L  A   G   +   L+ AGADV   T G G TAL+KA   G
Sbjct:    1 MVQRLLEKGA--NVAAQSSDGWAALYL---AVYYKQPEVVRLLLEHGADVDQKNKDIDWRRPMGGVTALHAAAEIGSEVMARLLIKAGADVRA-TDGDGMTALYKAVSNG 104
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BLAST of mRNA_Ecto-sp13_S_contig8822.20309.1 vs. uniprot
Match: UPI0007C6BD75 (ankyrin repeat domain-containing protein n=1 Tax=Nocardia fusca TaxID=941183 RepID=UPI0007C6BD75)

HSP 1 Score: 53.5 bits (127), Expect = 5.300e-6
Identity = 39/95 (41.05%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:    1 MVEAISCAHTGLAARMLEAGVDPNIPSDGRGGEAPVYLLGLSCFLGRPEMVRLLLKHGASVDKCMRGGET--PLQTAIGEGERGIVAQLVAAGAD 279
            +V A+S A T     +LEAG DP+ P +   G  P+Y   +    G  E VRLLL HGA   +C  G +   PL  A      G+VA L+AAGAD
Sbjct:    4 LVGAVSEAGTRRVRELLEAGADPDEPDEY--GTTPLYRASVQ---GATEAVRLLLAHGADPQRCGGGDDEGLPLCAAACWNHTGVVAALLAAGAD 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8822.20309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KGP8_9PHAE1.420e-7296.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G159_ECTSI5.720e-6895.69Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A428UDF1_9HYPO9.920e-738.18Uncharacterized protein n=1 Tax=Fusarium sp. AF-4 ... [more]
UPI0007C6BD755.300e-641.05ankyrin repeat domain-containing protein n=1 Tax=N... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8822contigEcto-sp13_S_contig8822:656..2627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score219.5
Seed ortholog evalue7.9e-55
Seed eggNOG ortholog2880.D7G159
Model size348
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size348
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464154.6833642-CDS-Ecto-sp13_S_contig8822:655..7681681464154.6833642-CDS-Ecto-sp13_S_contig8822:655..768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8822 656..768 -
1681464154.6968794-CDS-Ecto-sp13_S_contig8822:1400..15511681464154.6968794-CDS-Ecto-sp13_S_contig8822:1400..1551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8822 1401..1551 -
1681464154.7108216-CDS-Ecto-sp13_S_contig8822:2543..26271681464154.7108216-CDS-Ecto-sp13_S_contig8822:2543..2627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8822 2544..2627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8822.20309.1prot_Ecto-sp13_S_contig8822.20309.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8822 656..2627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8822.20309.1

>prot_Ecto-sp13_S_contig8822.20309.1 ID=prot_Ecto-sp13_S_contig8822.20309.1|Name=mRNA_Ecto-sp13_S_contig8822.20309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MVEAISCAHTGLAARMLEAGVDPNIPSDGRGGEAPVYLLGLSCFLGRPEM
VRLLLKHGASVDKCMRGGETPLQTAIGEGERGIVAQLVAAGADVNLRTGG
SGRTALHKAACQGDVQ
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mRNA from alignment at Ecto-sp13_S_contig8822:656..2627-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8822.20309.1 ID=mRNA_Ecto-sp13_S_contig8822.20309.1|Name=mRNA_Ecto-sp13_S_contig8822.20309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1972bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8822:656..2627- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGAGGCCATTTCTTGCGCACACACCGGGCTGGCAGCTCGCATGCT
CGAGGCCGGAGTAGATCCGAACATCCCGTCCGACGTGAGTGTGTGTGCTG
TGTGTGCACTTTATGAACCAGTCATAAGCCCTCGCTGTGCTGTTATGCAG
ATAGGCGCCATTTTCTGTGAAATTAGCAGGACAAGAAGGAGCCTAGCGAG
CTTACTTCGTAAACACCGTTGTGCTCATTTTTATTTCGATGGCTGGCTGA
AGCAAGTCCGTGCAGCATTGTCCCACTACTGCTGTATAGCCTGTGGAGTT
GGTTCTGTATAAAAATGGAATTTTGTGCCGCCTCTGCCACAGCAGCAGCA
GACTGCACTTCCGCCGGTATACTCTACACATTCGTTCCTTGAGCTCCGCA
CAGAAGAGAGAGAGCCGCCAGACAGCGGATGAACAGGCAAATATCAAAGA
GGCAGTGTAGTACGAGACTATCTGGCTCAAACGGTCTGGGGATGTTTGGG
GGCTTCTGGGAAACTCGGCAGCGTCCCAAGATCGATGGTTGACAGACAAC
AGGATAGAAATGCTTTTCAAAAATTCAAATTTCAAATCCCGGGATGCCGG
GATCCAGATGCACGCCGGTGCAGAGAGGCCAGACATGTGGTCTGAGCTGT
GCGTTCTCGACGATTGTCTTCAGCACTACTGTAGACACTACCGTGAAAAA
AAAATCTATGAATTACCCCGCGTTATTTTCTTGCCGTGATTGTTGTCGAG
AAAGTCCCGGCGTCGAACGTCGGGTGTATAGCAGTAGTCCATGCATGTAT
GTATGTACCCGAAGCGTACAGCCTGTCGTACACAAGACACGGCGCCTGAT
TGTCGGCTGCTCTGTTTGCCGCCGCTGTTGGCCCTTTGCCGAAGGCGTAT
TATTTTTCTCGTAACGTACAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
TTTGACCCTGTTCGCCCATTTTCCGTGCATTACAACATCCACCTCTTGTT
GCTGCTGGTGGTGCTGCTACACCAATCTGCCTCCTGTTGGTGTTGGTGCT
GGTGCTGTACCTTTTCCGGACTAAAGGGGCGAGGAGGCGAGGCCCCCGTT
TACTTGCTGGGGCTGTCCTGCTTCCTCGGCCGTCCGGAAATGGTCCGCCT
CCTGCTAAAGCACGGCGCCAGCGTGGACAAGTGCATGCGGGGAGGGGAGA
CTCCGCTCCAGACCGCCATCGGCGAAGGTCGGTCCTTAGCGTGGCTATGT
ATCAATTTTCTGTTGGAGACGTAGATACACGTCCAGCTTTCCAGGCTCTT
GTCTGTTTTTGGCCGCTCTGAGACTGACCTATTTTCATTGGTCAGCCGGT
CATCGATGCTTACGAAAAGAAAGACACACGACGTACACACGCATGTTGCG
TGGATTTGTTGCTCATGATTCGACGGAGCTCCGTCTCGTCAACCCTTGCT
CGTTTATTGGTAGTGGCAGCCGTGACGGCGGCGGTGGCGACGGTAGCACG
GCCGTCACCATGCTGGCGTGTGCACGCGTTTCGCACGCGCTTCGCACGCG
CCCTTGCAGAGCCTAGAAATTGCAGAAATGCACACGAAGAGAGCTGATGG
AGTCGGTCGACGTCTCATTATTTGCTTGTCCCTCCTCCCCCCCCCCCTGT
ATGTGGGTGTGTCTGAATGTCTCACTCTCTCTCCCTCTCTCCTTCTCTCT
TTCGCTCTCTTTCGCGTGCATGTGTTGTATCACGTCACGGAGAGAGGTGT
GCTATGATGGAGCCAATCCCGAACCCTTGTGTATCGTCTGAAATGTATGT
ACGAACAGCGCTTGACCGGCCCCCATTCCGCGGCGTGTCGCGTGTTCATG
TATCGCCAGGTGAACGTGGCATCGTCGCACAGCTCGTGGCCGCTGGCGCC
GATGTGAACTTAAGGACGGGAGGGTCGGGACGCACCGCTCTGCACAAAGC
CGCCTGCCAGGGCGATGTGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8822:656..2627-

>mRNA_Ecto-sp13_S_contig8822.20309.1 ID=mRNA_Ecto-sp13_S_contig8822.20309.1|Name=mRNA_Ecto-sp13_S_contig8822.20309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8822:656..2627- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGAGGCCATTTCTTGCGCACACACCGGGCTGGCAGCTCGCATGCT
CGAGGCCGGAGTAGATCCGAACATCCCGTCCGACGGGCGAGGAGGCGAGG
CCCCCGTTTACTTGCTGGGGCTGTCCTGCTTCCTCGGCCGTCCGGAAATG
GTCCGCCTCCTGCTAAAGCACGGCGCCAGCGTGGACAAGTGCATGCGGGG
AGGGGAGACTCCGCTCCAGACCGCCATCGGCGAAGGTGAACGTGGCATCG
TCGCACAGCTCGTGGCCGCTGGCGCCGATGTGAACTTAAGGACGGGAGGG
TCGGGACGCACCGCTCTGCACAAAGCCGCCTGCCAGGGCGATGTGCAG
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