mRNA_Ecto-sp13_S_contig8820.20307.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8820.20307.1
Unique NamemRNA_Ecto-sp13_S_contig8820.20307.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8820.20307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8820contigEcto-sp13_S_contig8820:5246..6194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size949
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464154.4909697-UTR-Ecto-sp13_S_contig8820:5245..57081681464154.4909697-UTR-Ecto-sp13_S_contig8820:5245..5708Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8820 5246..5708 +
1681464154.516459-UTR-Ecto-sp13_S_contig8820:6191..61941681464154.516459-UTR-Ecto-sp13_S_contig8820:6191..6194Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8820 6192..6194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464154.5051486-CDS-Ecto-sp13_S_contig8820:5708..61911681464154.5051486-CDS-Ecto-sp13_S_contig8820:5708..6191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8820 5709..6191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8820.20307.1prot_Ecto-sp13_S_contig8820.20307.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8820 5709..6191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8820.20307.1

>prot_Ecto-sp13_S_contig8820.20307.1 ID=prot_Ecto-sp13_S_contig8820.20307.1|Name=mRNA_Ecto-sp13_S_contig8820.20307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MEKQHNLSAVSSAGSPLGQHAHFLTVSVNKNDNVRIIHGLGALLPKTRNA
PKRKDDPGIYGLLATAVDVQTARQHNVIEHPNRSIYPSLDPSSQLHITQA
AHLRPPPITIRGQQQSPGTCVLLIPSSLSSLPRRTPVYFNTHQLDSSGKL
TVLSLKTDGP*
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mRNA from alignment at Ecto-sp13_S_contig8820:5246..6194+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8820.20307.1 ID=mRNA_Ecto-sp13_S_contig8820.20307.1|Name=mRNA_Ecto-sp13_S_contig8820.20307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=949bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8820:5246..6194+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTGCCCGGGGGGGGGGGCGGGGGGTGGGTGCGGCCCCCGCCAGCAAAAA
AAACGTTAAACGCACGTAATCTGGCCTCATGGAAAGCAACGTCCCCGACT
AAGGGCATCTCAGTCCTCTTCTCGACCTCTTACGGTGCAATGTGCGCCGA
GTCGTCTCTACCTAAGTGGGCTGGGTTTTTCCAACACAGACGACGATAGC
AAACATCAAATTTCGCGAGGTGCGCGGCACCATGCATAACTATCTTCGCA
CAACCGAAGAAAGTGGTTCTACTCCCCCCTCCAGCCTCCTCCCTCCCTCC
CGCAAGCGATACAAGCAACAACGATGCTCTCCGATACACAGAAACTATTC
ATCATTTTTGTAGGTGTCCCTCAGAAGGAAAAGCAAAAAAATAACATTCG
AACTGACTCAACTATCCCAGTCCATCGACGCAAGGCGTGGCCACGGGCGG
CAAGCTGGGAGCCATGGAAAAACAGCACAACCTCAGCGCCGTTTCCTCTG
CAGGCAGCCCCCTTGGCCAACATGCACACTTTCTGACTGTGAGCGTAAAC
AAGAACGACAACGTACGCATCATACACGGGTTGGGGGCCCTGCTTCCCAA
GACCCGAAACGCCCCCAAACGAAAAGACGATCCAGGTATCTACGGCCTCC
TCGCCACGGCGGTAGACGTGCAGACCGCTCGGCAGCACAACGTCATCGAG
CATCCCAATCGATCTATCTACCCTTCGCTTGACCCTTCCAGCCAGCTGCA
CATCACGCAAGCCGCACACCTACGTCCCCCGCCGATAACAATCAGGGGGC
AGCAACAGAGTCCCGGAACATGCGTTCTTCTCATCCCCTCCTCTCTTTCC
TCTCTACCCCGACGCACCCCAGTTTACTTTAACACGCATCAACTCGATTC
GTCAGGCAAGCTCACTGTTCTCTCTCTCAAAACAGACGGACCATAAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8820:5246..6194+

>mRNA_Ecto-sp13_S_contig8820.20307.1 ID=mRNA_Ecto-sp13_S_contig8820.20307.1|Name=mRNA_Ecto-sp13_S_contig8820.20307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8820:5246..6194+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAAAACAGCACAACCTCAGCGCCGTTTCCTCTGCAGGCAGCCCCCT
TGGCCAACATGCACACTTTCTGACTGTGAGCGTAAACAAGAACGACAACG
TACGCATCATACACGGGTTGGGGGCCCTGCTTCCCAAGACCCGAAACGCC
CCCAAACGAAAAGACGATCCAGGTATCTACGGCCTCCTCGCCACGGCGGT
AGACGTGCAGACCGCTCGGCAGCACAACGTCATCGAGCATCCCAATCGAT
CTATCTACCCTTCGCTTGACCCTTCCAGCCAGCTGCACATCACGCAAGCC
GCACACCTACGTCCCCCGCCGATAACAATCAGGGGGCAGCAACAGAGTCC
CGGAACATGCGTTCTTCTCATCCCCTCCTCTCTTTCCTCTCTACCCCGAC
GCACCCCAGTTTACTTTAACACGCATCAACTCGATTCGTCAGGCAAGCTC
ACTGTTCTCTCTCTCAAAACAGACGGACCATAA
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