mRNA_Ecto-sp13_S_contig8809.20295.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8809.20295.1
Unique NamemRNA_Ecto-sp13_S_contig8809.20295.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8809.20295.1 vs. uniprot
Match: D7FR97_ECTSI (Ribosome biogenesis protein NSA2 homolog n=3 Tax=PX clade TaxID=569578 RepID=D7FR97_ECTSI)

HSP 1 Score: 437 bits (1125), Expect = 1.480e-154
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1 
Query:    1 QKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 663
            QKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV
Sbjct:   40 QKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 260
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BLAST of mRNA_Ecto-sp13_S_contig8809.20295.1 vs. uniprot
Match: A0A7S2SRB9_9STRA (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRB9_9STRA)

HSP 1 Score: 405 bits (1041), Expect = 9.310e-142
Identity = 204/221 (92.31%), Postives = 213/221 (96.38%), Query Frame = 1 
Query:    1 QKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 663
            QKVHGIRAKLY +KRFKEKATMRKTI+MHQER NKHAND+AVP GAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKW+VPIPKVKPVADDEMFKVLRSGKRK KAWKRMVTKV FVGE FTRK PKYERFIRPTGLRFKKAHVTHPEL+ATFHLDI+GVKKNPSS LYTQLGV+TKGTVIEVNVS+LGLVTQSGKVVWGKYAQVTN+PELDGCINAVLLV
Sbjct:   40 QKVHGIRAKLYHQKRFKEKATMRKTISMHQERDNKHANDEAVPKGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWEVPIPKVKPVADDEMFKVLRSGKRKAKAWKRMVTKVCFVGENFTRKNPKYERFIRPTGLRFKKAHVTHPELQATFHLDIIGVKKNPSSSLYTQLGVITKGTVIEVNVSELGLVTQSGKVVWGKYAQVTNNPELDGCINAVLLV 260
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BLAST of mRNA_Ecto-sp13_S_contig8809.20295.1 vs. uniprot
Match: A0A7S2V588_9STRA (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V588_9STRA)

HSP 1 Score: 404 bits (1039), Expect = 1.880e-141
Identity = 198/221 (89.59%), Postives = 214/221 (96.83%), Query Frame = 1 
Query:    1 QKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 663
            QKVHG+RAKLY ++RFKEKATM+KT+AMHQERTNKH N+DAVP GAVPAYLLDREGVSRAKVLSNT+KQKRKEKAGKWDVPIPKVKPVADDEMFK++R+GKR+ KAWKRMVTKVTFVG+ FTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHL ILGVKKNPSSP+YTQLGV+TKGTVIEVNVS+LGLVT SGKVVWGKYAQVTN+PELDGCINAVLLV
Sbjct:   40 QKVHGLRAKLYNKQRFKEKATMKKTLAMHQERTNKHGNEDAVPSGAVPAYLLDREGVSRAKVLSNTIKQKRKEKAGKWDVPIPKVKPVADDEMFKIMRTGKRRAKAWKRMVTKVTFVGDDFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLQILGVKKNPSSPMYTQLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 260
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BLAST of mRNA_Ecto-sp13_S_contig8809.20295.1 vs. uniprot
Match: W4GLP2_9STRA (Ribosome biogenesis protein NSA2 homolog n=6 Tax=Oomycota TaxID=4762 RepID=W4GLP2_9STRA)

HSP 1 Score: 395 bits (1016), Expect = 5.990e-138
Identity = 193/221 (87.33%), Postives = 208/221 (94.12%), Query Frame = 1 
Query:    1 QKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 663
            QKVHG+RAKLY +KRFKEKA M+KT+AMH ERTNKHANDD +PDGAVP+YLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKP+ADDEMFKVLRSGKR+NKAWKRM+TK TFVGE FTRK PKYERFIRP  +RFKKAHVTHPELK TF LDILGVKKNPSSPLYTQLGVMTKGT+IEVNVS+LGLVT +GKVVWGK+AQVTN+PE DGCINAVLLV
Sbjct:   40 QKVHGLRAKLYNQKRFKEKAAMKKTLAMHNERTNKHANDDNIPDGAVPSYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPIADDEMFKVLRSGKRRNKAWKRMITKATFVGENFTRKPPKYERFIRPAAMRFKKAHVTHPELKTTFQLDILGVKKNPSSPLYTQLGVMTKGTIIEVNVSELGLVTTTGKVVWGKFAQVTNNPENDGCINAVLLV 260
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BLAST of mRNA_Ecto-sp13_S_contig8809.20295.1 vs. uniprot
Match: A0A662Y3D7_9STRA (Ribosome biogenesis protein NSA2 homolog n=3 Tax=Oomycota TaxID=4762 RepID=A0A662Y3D7_9STRA)

HSP 1 Score: 395 bits (1015), Expect = 1.030e-136
Identity = 193/221 (87.33%), Postives = 207/221 (93.67%), Query Frame = 1 
Query:    1 QKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 663
            QKVHG+RAKLY +KRFKEKA M+KT+A+H ERTNKHANDD +PDGAVP+YLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKP+ADDEMFKVLRSGKR+NKAWKRM+TK TFVGE FTRK PKYERFIRP+ +RFKKAHVTHPELK TF LDILGVKKNP SPLYTQLGVMTKGTVIEVNVS+LGLVT SGKVVWGKYAQ+TN PE DGCINAVLLV
Sbjct:  111 QKVHGLRAKLYNQKRFKEKAAMKKTLALHNERTNKHANDDEIPDGAVPSYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPIADDEMFKVLRSGKRRNKAWKRMITKATFVGENFTRKPPKYERFIRPSAMRFKKAHVTHPELKTTFQLDILGVKKNPQSPLYTQLGVMTKGTVIEVNVSELGLVTTSGKVVWGKYAQITNVPENDGCINAVLLV 331
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BLAST of mRNA_Ecto-sp13_S_contig8809.20295.1 vs. uniprot
Match: A0A7S2DND8_9STRA (Ribosome biogenesis protein NSA2 homolog n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DND8_9STRA)

HSP 1 Score: 390 bits (1002), Expect = 1.160e-135
Identity = 195/219 (89.04%), Postives = 207/219 (94.52%), Query Frame = 1 
Query:    7 VHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 663
            VHG+RAKLY +KRFKEKA MRKTIAMHQER NKH NDDA+P  A+PAYLLDREGVSRAKVLSNTVKQKRKEKAGKW+VPIPKVKPVAD+EMFKV+RSGKRK KAWKRMVTKVTFVG  FTRK PKYERFIRP+GLRFKKAHVTHPEL+ATFHLD+LGVKKNPSS LYTQLGV+TKGTVIEVNVSDLGLVT SGKVVWGKYAQVTN+PELDGCINAVLLV
Sbjct:   52 VHGLRAKLYNQKRFKEKAVMRKTIAMHQERDNKHGNDDALPKDALPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWNVPIPKVKPVADEEMFKVMRSGKRKAKAWKRMVTKVTFVGPNFTRKNPKYERFIRPSGLRFKKAHVTHPELQATFHLDLLGVKKNPSSNLYTQLGVITKGTVIEVNVSDLGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 270
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BLAST of mRNA_Ecto-sp13_S_contig8809.20295.1 vs. uniprot
Match: F0WA33_9STRA (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WA33_9STRA)

HSP 1 Score: 383 bits (984), Expect = 4.490e-133
Identity = 185/221 (83.71%), Postives = 205/221 (92.76%), Query Frame = 1 
Query:    1 QKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 663
            QKVHG+RAKLY +KRFKEKA M+KT+AMHQERTNK  N+DA+PDGAVP+YLLDREGVS+AK+LSNTVKQKRKEKAGKW VPIPKVKP+ADDEMFKVLRSGKR+NK+WKRM+TK TFVGE FTRK PKYERFIRP+ +RFKKAHVTHPEL+ TF L I+GVKKNP SPLYTQLGVMTKGT+IEVNVS+LGLVT SGKVVWGKYAQ+TN PE DGCINAVLLV
Sbjct:   40 QKVHGLRAKLYNQKRFKEKAAMKKTVAMHQERTNKQGNNDAIPDGAVPSYLLDREGVSKAKILSNTVKQKRKEKAGKWSVPIPKVKPIADDEMFKVLRSGKRRNKSWKRMITKATFVGENFTRKPPKYERFIRPSAMRFKKAHVTHPELQTTFQLAIIGVKKNPQSPLYTQLGVMTKGTIIEVNVSELGLVTTSGKVVWGKYAQITNVPENDGCINAVLLV 260
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BLAST of mRNA_Ecto-sp13_S_contig8809.20295.1 vs. uniprot
Match: B8C4B1_THAPS (Ribosome biogenesis protein NSA2 homolog n=9 Tax=Bacillariophyta TaxID=2836 RepID=B8C4B1_THAPS)

HSP 1 Score: 383 bits (983), Expect = 6.370e-133
Identity = 189/221 (85.52%), Postives = 206/221 (93.21%), Query Frame = 1 
Query:    1 QKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 663
            QKVHG+RAKLY ++RFKEKATMRKTIA H ER+NKHANDDAV DGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKW+VPIPKVKPVADDEMFKV+R+G +KNKAWKR+VTK TFVG+ FTRKAPKYERFIRPTGLR K+A+VTHPELK +F LDILGVKKNPSS LYT LGV+TKGT+IEVNVSDLGLVT SGKV WGK AQVTN+PELDGC+NAVLLV
Sbjct:   40 QKVHGLRAKLYNQRRFKEKATMRKTIAQHNERSNKHANDDAVADGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWEVPIPKVKPVADDEMFKVMRTGSKKNKAWKRVVTKCTFVGDNFTRKAPKYERFIRPTGLRMKRANVTHPELKTSFQLDILGVKKNPSSSLYTNLGVLTKGTIIEVNVSDLGLVTTSGKVAWGKMAQVTNNPELDGCVNAVLLV 260
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BLAST of mRNA_Ecto-sp13_S_contig8809.20295.1 vs. uniprot
Match: W7THK2_9STRA (Ribosome biogenesis protein NSA2 homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THK2_9STRA)

HSP 1 Score: 380 bits (977), Expect = 5.220e-132
Identity = 187/221 (84.62%), Postives = 207/221 (93.67%), Query Frame = 1 
Query:    1 QKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 663
            QKVHG+RAKLY  KR+KEKA MRKT+AMHQE+TNK AN +  P+GAVPAYL+DREG+SRAKVLSN+VKQKR EKAGKW VP+PKVKPVADDEMFKV++SGKRK K+WKRMVTKVTFVGE FTRKAPK+ERFIRPTGLRFKKAHVTHP+L+ATF LDILGVKKNPSSP+YT LGV+TKGTVIEVNVS+LGLVT SGKVVWGKYAQVTN+PELDGCINAVLLV
Sbjct:   40 QKVHGLRAKLYNAKRYKEKAQMRKTLAMHQEKTNKRANQEGAPEGAVPAYLIDREGISRAKVLSNSVKQKRAEKAGKWSVPLPKVKPVADDEMFKVMQSGKRKAKSWKRMVTKVTFVGENFTRKAPKFERFIRPTGLRFKKAHVTHPDLQATFCLDILGVKKNPSSPMYTTLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 260
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BLAST of mRNA_Ecto-sp13_S_contig8809.20295.1 vs. uniprot
Match: A0A1Z5KRE4_FISSO (Ribosome biogenesis protein NSA2 homolog n=3 Tax=Bacillariophycidae TaxID=33850 RepID=A0A1Z5KRE4_FISSO)

HSP 1 Score: 376 bits (966), Expect = 2.470e-130
Identity = 184/221 (83.26%), Postives = 205/221 (92.76%), Query Frame = 1 
Query:    1 QKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 663
            QKVHGIRAKLYQ++RFKEKAT+RKTIA H +R NKHA+DDAV +GAVPAYLLDR+GVSRAKVLSNT+KQKRKEKAGKW+VPIPKVKPVADDEMFK LR+GK++NKAWKRMVTK TFVG+ FTRK PKYERFIRP+GLR KKA+VTHPELK TF LDILGVKKNPSS LYT LGV+TKGT++EVNVS+LGLVT SGKV WGK AQVTN+PELDGC+NAVLLV
Sbjct:   40 QKVHGIRAKLYQKRRFKEKATLRKTIAQHNQRNNKHADDDAVAEGAVPAYLLDRQGVSRAKVLSNTIKQKRKEKAGKWEVPIPKVKPVADDEMFKTLRTGKKRNKAWKRMVTKCTFVGDSFTRKNPKYERFIRPSGLRMKKANVTHPELKTTFQLDILGVKKNPSSALYTNLGVLTKGTILEVNVSELGLVTTSGKVAWGKMAQVTNNPELDGCVNAVLLV 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8809.20295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR97_ECTSI1.480e-154100.00Ribosome biogenesis protein NSA2 homolog n=3 Tax=P... [more]
A0A7S2SRB9_9STRA9.310e-14292.31Ribosome biogenesis protein NSA2 homolog n=1 Tax=R... [more]
A0A7S2V588_9STRA1.880e-14189.59Ribosome biogenesis protein NSA2 homolog n=1 Tax=F... [more]
W4GLP2_9STRA5.990e-13887.33Ribosome biogenesis protein NSA2 homolog n=6 Tax=O... [more]
A0A662Y3D7_9STRA1.030e-13687.33Ribosome biogenesis protein NSA2 homolog n=3 Tax=O... [more]
A0A7S2DND8_9STRA1.160e-13589.04Ribosome biogenesis protein NSA2 homolog n=2 Tax=D... [more]
F0WA33_9STRA4.490e-13383.71Ribosome biogenesis protein NSA2 homolog n=1 Tax=A... [more]
B8C4B1_THAPS6.370e-13385.52Ribosome biogenesis protein NSA2 homolog n=9 Tax=B... [more]
W7THK2_9STRA5.220e-13284.62Ribosome biogenesis protein NSA2 homolog n=2 Tax=M... [more]
A0A1Z5KRE4_FISSO2.470e-13083.26Ribosome biogenesis protein NSA2 homolog n=3 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8809contigEcto-sp13_S_contig8809:1..4360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score439.1
Seed ortholog evalue1.2e-120
Seed eggNOG ortholog2880.D7FR97
Model size666
KEGG koko:K14842
Hectar predicted targeting categoryother localisation
GOsGO:0000460,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Exons5
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG2007@1,KOG3163@2759
Ec32 ortholog descriptionRibosomal protein S8e/ribosomal biogenesis NSA2
Ec32 orthologEc-26_002350.1
Cds size666
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464153.780677-CDS-Ecto-sp13_S_contig8809:0..741681464153.780677-CDS-Ecto-sp13_S_contig8809:0..74Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8809 1..74 +
1681464153.7944255-CDS-Ecto-sp13_S_contig8809:2427..26051681464153.7944255-CDS-Ecto-sp13_S_contig8809:2427..2605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8809 2428..2605 +
1681464153.8053358-CDS-Ecto-sp13_S_contig8809:2919..30061681464153.8053358-CDS-Ecto-sp13_S_contig8809:2919..3006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8809 2920..3006 +
1681464153.8160496-CDS-Ecto-sp13_S_contig8809:3644..38181681464153.8160496-CDS-Ecto-sp13_S_contig8809:3644..3818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8809 3645..3818 +
1681464153.826564-CDS-Ecto-sp13_S_contig8809:4207..43601681464153.826564-CDS-Ecto-sp13_S_contig8809:4207..4360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8809 4208..4360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8809.20295.1prot_Ecto-sp13_S_contig8809.20295.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8809 1..4360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8809.20295.1

>prot_Ecto-sp13_S_contig8809.20295.1 ID=prot_Ecto-sp13_S_contig8809.20295.1|Name=mRNA_Ecto-sp13_S_contig8809.20295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
QKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAY
LLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSG
KRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELK
ATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWG
KYAQVTNSPELDGCINAVLLV*
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mRNA from alignment at Ecto-sp13_S_contig8809:1..4360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8809.20295.1 ID=mRNA_Ecto-sp13_S_contig8809.20295.1|Name=mRNA_Ecto-sp13_S_contig8809.20295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8809:1..4360+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAAGGTCCACGGCATCCGCGCGAAGCTTTACCAGCGAAAGCGTTTCAA
GGAGAAGGCGACGATGCGAAAAACGTGAGTGTCTCCGTCCACAACGGATG
AGGTTGTCGAATTTGTCAGCTCCGACTTTATTTCTGTTGTATGCATTCTT
TGCTCGATTGTGTCGTCTGTATAGACGAATAGACCTCTCTGGAAGTGCGC
GATTTGTTGTGCACCGATACAATGTGTTGCGTGCCTACATACCTTCCTAG
TCAGCTCCGCGTATGTTGGAAATTCCTGCTGTACATCATGCCGACACCAT
CACCCGTGTGCAAAAGGAAACGGATCCGCTGTTGAAGGAGGTGGAGAAAA
AGGTGTATGGGAGCTTCCACCTGATGAAATCCGGCGGGTGCTTCCATTCA
TGCCAAAGGCTTCGTCTGGTCTTACGCCCACACATGATGTGATGAGCAAC
ACACAGGCCTTAACCCACCGTAAAAATACGGTTTTGGTTTGCAACTGAAC
GGCATGGAGGTGACACCGAGGGATTCCTACGGGTTGTTTCTACGGGTTGT
TCGGGCCTCTTTTTTTTTACGTTCCTCCCGTCTTGTCTCACATCCACTCA
TGTATTCACGAACAAGCTCTACTGATTACAGCGATTCGCCTTCATCGATC
CCGACCTAACGGTCTGGAAGATTCCCAGCGAATAGACCACGTGGGCGACC
AGCCTCAGTACGACAACATATTCGAGAAACACCTTGTATTCAAGCACGAT
GCAGCAATTGTTGGTAGCTTGTGGGTGCGTCCGTTGCCCGTGGTATCTAC
TGGTGTTTATAGGTAGCGGGGCCGGTAGTTGTACATCGGCTCTTTGTATG
TACATAGTTAAGCACAAGATTTGGTCATTTTTTTGCTTCGGCATTTCTTT
CTCTCGCGGCAGTAATTTTTTTGTAGCGCTTCCTTCGAAGCGGCACGCCA
GAGGATCGTCGGCACATGAAAGCTCAGACACAGAGCTCGGCAAGCCTCCG
TGGGGCGAGCGGTTGACGGTCAAAGTCGCAAAAACTGGCTCTATACCCCG
GGGACGCGTTCCGCGCAGACACAAGCCTGGCGGATCAATTCTGAAACCCA
TCAGAAACGACAGAAAGGAAAATTGCCCGCAAGCACTTTTCGAACAGGTT
TCTCTCTACCGACAACCGGATAAAAACCTGATCATACGCCCCACAATGAA
TCCTTACTCATGTTGCTTCTTCAAAGCCGGCGCCATCACCTCGGTTTGTG
GTGTTTCGGGCTGAAAATCAGTTGTCTTCTTTGCAGCCTTCTGTATGTGC
GTGTGTGTTTACATCTTATTTTTTTACGACAGTTCTCCCATTTTTCGTGG
TGAGACGTGTACAACATTTTCAGCGTATGTAGCGTACTACACTTTTCAGT
GTATTTTTTCGTGCAACTACAACCATGCAGGGTCACACGGGAGGGGGGAG
ACACCTTTGCTTTTCTCTTCTTTTTATTTCTTTTCATGCCTCCTGCGGTG
CGTGGTGAATTTTGTTTACATCTCGAGAAGGGTCCAGGCGTCCCTTTCCC
TCGTCAACGGTGCTAACGTCGAAGTCTGGTACTCACGACAGACTTGTTCA
CCCTCAATTTTGTAAATTCTCACCCCATGGGGATCCGAACTCACAATCTC
TGCGACTAGCGGTTTACGAGGATACCACTAGACCACCGGGGCGACCGGTT
ATTAATGAAGGTGTATGAATCACGGTCGGGTACGGAATGGACCTCGCGTC
CACTGCATCGGTCGTAGGCCACGCTACCAACTGACCCCAGTCCAGTGCGT
AATTGTCGATGTGTAGCGAGCAAAAATGAAATATTACCTCTTGCGTGACG
TTCATCTCCGTTATTCATCGTTCGCTGATTCCACCTCGCTGTGACTCCTC
GTGCCGTCGCACGCAGCGGGCCCAGGGAAACGCCGCTCGCTGATGTAGAC
AAGTCTGATCGCATGCACCCACAGTGCTGATCAGCTTGTGTTAATTCGTG
GTGTTACATCGGATTCAAATTATGTTCTCATTGGAATCTGCCACAAAAAA
AAATCATATGCAAAAGTTTTATTTCTCCCTGGCAAGTCGTTGTCCACTCG
AGCTGGCTCCAGCGTAGAATACATGCCGGCATGCGAGCGTGATGTATCTT
CCGTCTACCCATCCAAAATGAGACATCCTGTTGCAGGCAATGCGCAGCTG
GTCCTGCGTCGCCCGCGGGAGGCTTGACACCCACGTCCCAAAGGGAGACC
TTGCATCCGTTTGTCAAATTCACCATGATGAGTGAAACCGATGAAACCGG
TCTGTTGACGCTCCTCGTTCGGTCATCAGATCATCTTCTTGTTTACTGAT
GTTTACCGCCAAGACTGGGTTCATTAACGCAACACCCGGTTCGTGTTTGT
GCGTTCCTACTTTCCATGCTGAACCAGAATCGCAATGCACCAGGAACGCA
CGAACAAGCACGCCAACGATGACGCAGTACCAGACGGTGCCGTTCCTGCT
TACTTGCTCGATCGCGAGGGTGTTAGTCGCGCCAAGGTTTTGAGCAATAC
GGTAAAGCAAAAGCGCAAGGAAAAAGCGGGCAAGTGGGACGTGCCAATAC
CGAAGGTATGTGGTCACGGCAATGAAGCATTTGGAGACCCCCTTGTGTTT
TTTCCGTTTACTGCACAGCAGCAGTCATTGTCATGATGTCTTTCTACGTA
GTGACAGACTTGCGTTTTTTCTCCTGTTCCAACCAACCCCAACGCAGTTA
CTGCTGTTCCGAACTCAAGTAAAGCAAATCGATTCTGTGTCTCACACGTG
TTCGATCGGCTCCTTGCCATTTTGCGATGCATTCTTCGTTTTACTCGTGT
ACAAACCTAGTCAAGGTATTCCTCGTGTTATTCGTTCATCCGTTCTGCTT
GTGGCCACCTCATACCCAGGTGAAGCCAGTGGCCGACGATGAGATGTTCA
AGGTTTTGCGAAGTGGAAAGCGCAAGAACAAGGCATGGAAACGCATGGTG
ACGAAGGTACGACGATTCTTCGTCCTTTGAACTGCATTTCCTCCTCATGG
GCGGGGGTTTCTTAGACTTGCTCCGGGTGGGATCCACTCAGTTTTTATCG
TGTTTTCGTTATGAACTTGAGCGGAACCCCAGATACACGCCGCTCTCGGA
TCGATTATTGCGTTTGAAGTTGATGGGGCGGTTGCGAATGCGTTGGGATG
GTGTGACGAAGCCATATTCCATGGCCAGCGTACGGCTAATAGATGGGGAA
CGCAACTCTCAACGTGACACAAGCGAACACGTTCCACTGTTTGGTCGGTC
GCAAAAGGTTTTAGCTGTATGTACATGTGTGTTTCATCATCCCGCTTGCT
ACGGTTGCTTCCAGAAAGGGCGCATTTCGTATCTATCTCAACTGAGGTCT
CCGATCTGGTGCAACACAGAAAACGTCCTGGGCGGCGACGTCCTAGGCGG
CGCGTGCATAGTACAGCCCCCTAGTTAGTGGCACAGGTTGTTCTTGTAGA
AGGAAACATGAAACCCAACCGAGCACGGTTGGAGTCAACTCTCGGCCCCC
TCCGTTGTGCGCGGTATGAGCATGTTGCTATTTTCGATGGTAACAATGTG
TGCGTGTGTATTCGCGCGTGTTTGCACTGGAATTCCGGTCGCAGGTCACT
TTCGTCGGCGAGGGCTTCACACGGAAAGCACCCAAGTACGAACGGTTTAT
CCGACCAACAGGTCTCCGATTTAAGAAGGCCCACGTAACACACCCCGAGC
TTAAGGCAACCTTTCACCTCGACATCCTTGGGGTTAAAAAGAACCCGAGC
TCGCCTCTCTACACTCAGGTATGCATATAACGCGACCGCTTGCGGGAATT
TGCCGCGTCGTACAAATTTGATGCATGAGTCCATCGTGGAGAACAGGACA
GCATTGGAGTTGGCAGTGATGAGTTGTAGTCCGAGTTGCGGCACATCACC
AGTACATGCCTCTGCCAAGTGCACGGAAGCTTAGGACAATTTGGCTGTCA
AGTTTTCTGTTCAGTAGGTTTCCGAAGTTCATCGCTGAGACTGATCCCCG
AATGACGTTCGTGCAGGGTCTAGGCCGGATCTGGAAACGGGCACATTGAC
TCCATTGTAGCGTCTTGGAGACCGTACACTCGAACTGAGGTATTTCCTCG
ACTGAAAAATCTCGCTGGTTTTTCTAACACAATTGATTTTGGTTCTCTTT
TCGACAGCTTGGAGTCATGACCAAGGGCACCGTCATCGAGGTCAACGTAA
GCGACCTTGGCCTGGTGACCCAAAGCGGCAAGGTCGTCTGGGGAAAGTAC
GCGCAAGTCACAAATTCACCGGAGCTGGATGGGTGTATCAATGCCGTGCT
GCTTGTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8809:1..4360+

>mRNA_Ecto-sp13_S_contig8809.20295.1 ID=mRNA_Ecto-sp13_S_contig8809.20295.1|Name=mRNA_Ecto-sp13_S_contig8809.20295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8809:1..4360+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAAGGTCCACGGCATCCGCGCGAAGCTTTACCAGCGAAAGCGTTTCAA
GGAGAAGGCGACGATGCGAAAAACAATCGCAATGCACCAGGAACGCACGA
ACAAGCACGCCAACGATGACGCAGTACCAGACGGTGCCGTTCCTGCTTAC
TTGCTCGATCGCGAGGGTGTTAGTCGCGCCAAGGTTTTGAGCAATACGGT
AAAGCAAAAGCGCAAGGAAAAAGCGGGCAAGTGGGACGTGCCAATACCGA
AGGTGAAGCCAGTGGCCGACGATGAGATGTTCAAGGTTTTGCGAAGTGGA
AAGCGCAAGAACAAGGCATGGAAACGCATGGTGACGAAGGTCACTTTCGT
CGGCGAGGGCTTCACACGGAAAGCACCCAAGTACGAACGGTTTATCCGAC
CAACAGGTCTCCGATTTAAGAAGGCCCACGTAACACACCCCGAGCTTAAG
GCAACCTTTCACCTCGACATCCTTGGGGTTAAAAAGAACCCGAGCTCGCC
TCTCTACACTCAGCTTGGAGTCATGACCAAGGGCACCGTCATCGAGGTCA
ACGTAAGCGACCTTGGCCTGGTGACCCAAAGCGGCAAGGTCGTCTGGGGA
AAGTACGCGCAAGTCACAAATTCACCGGAGCTGGATGGGTGTATCAATGC
CGTGCTGCTTGTGTAG
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