mRNA_Ecto-sp13_S_contig8805.20290.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A6H5K4Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Y7_9PHAE) HSP 1 Score: 160 bits (404), Expect = 2.600e-44 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
Query: 1 VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM
Sbjct: 131 VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 213
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A836CGK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGK6_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.270e-32 Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 1
Query: 1 VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
V+AFV M+FVGTGNRIFMKLQT PMYNYPF + +L+TFIY+PVCF YI+PM FGSAIT QRAIP+ KFAVMGLLD+VAGIM
Sbjct: 86 VLAFVTMLFVGTGNRIFMKLQTIPMYNYPFTMNLLTTFIYIPVCFAYILPMQWFGSAITAEQRAIPRHKFAVMGLLDAVAGIM 168
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A8K1FL75_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FL75_PYTOL) HSP 1 Score: 110 bits (276), Expect = 3.040e-27 Identity = 52/83 (62.65%), Postives = 69/83 (83.13%), Query Frame = 1
Query: 1 VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
V++FV M+FVG GN+IF KLQT PM+NYP FL +L+TF+Y+P+ F YI+PM+ +G+AIT QR++PK FAVMG LDSVAGI+
Sbjct: 14 VVSFVAMVFVGLGNKIFQKLQTIPMHNYPMFLNLLTTFVYIPISFAYIIPMIKYGTAITAEQRSVPKKTFAVMGGLDSVAGIL 96
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A5D6XLH6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLH6_9STRA) HSP 1 Score: 110 bits (276), Expect = 3.770e-27 Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 1
Query: 4 IAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
++FV MIFVG GN+IF KLQT PM NYP FL +L+TF+Y+PV F YIVPM+ +GSAIT QR IPK KFAVMG LDSV+GIM
Sbjct: 15 VSFVAMIFVGLGNKIFQKLQTIPMRNYPTFLNILTTFVYIPVSFAYIVPMIKYGSAITWEQRNIPKRKFAVMGALDSVSGIM 96
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: H3GRN7_PHYRM (Uncharacterized protein n=22 Tax=Phytophthora TaxID=4783 RepID=H3GRN7_PHYRM) HSP 1 Score: 110 bits (275), Expect = 4.300e-27 Identity = 54/82 (65.85%), Postives = 69/82 (84.15%), Query Frame = 1
Query: 4 IAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
++FV M+FVG GN+IF KLQT PM+NYP FL +L+TF+Y+P+ F YI+PM+ +GSAIT QR+IPK KFAVMG LDSVAGI+
Sbjct: 15 VSFVAMVFVGLGNKIFQKLQTIPMHNYPTFLNLLTTFVYIPISFAYILPMIKYGSAITWDQRSIPKRKFAVMGGLDSVAGIL 96
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A3F2RYX5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RYX5_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.650e-26 Identity = 53/82 (64.63%), Postives = 68/82 (82.93%), Query Frame = 1
Query: 4 IAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
++FV M+FVG GN+IF KLQT PM+NYP FL +L+TF+Y+P+ F YI+PM+ +GSAIT QR IPK KFAVMG LDS+AGI+
Sbjct: 14 VSFVAMVFVGLGNKIFQKLQTIPMHNYPTFLNLLTTFVYIPISFAYILPMIKYGSAITWDQRNIPKRKFAVMGGLDSIAGIL 95
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A7R9U0X6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X6_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.440e-26 Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1
Query: 4 IAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
+ F MI GNR+F KLQT PMY+YPFFL +LS YVP+CF YIVPM+AFG AITP Q AIPK KFA+MGLLD++AG+M
Sbjct: 79 LCFFAMIVAALGNRVFQKLQTLPMYHYPFFLNVLSVAFYVPLCFAYIVPMVAFGRAITPEQTAIPKRKFAIMGLLDALAGVM 160
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A0P1AMR1_PLAHL (UAA transporter n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMR1_PLAHL) HSP 1 Score: 108 bits (269), Expect = 3.130e-26 Identity = 52/82 (63.41%), Postives = 68/82 (82.93%), Query Frame = 1
Query: 4 IAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
++FV M+FVG GN+IF KLQT PM+NYP FL +L+TF+Y+P+ F YI+PM+ +GSAIT Q+ IPK KFAVMG LDS+AGI+
Sbjct: 15 VSFVAMVFVGLGNKIFQKLQTIPMHNYPAFLNLLTTFVYIPISFAYILPMIKYGSAITWEQQNIPKSKFAVMGGLDSIAGIL 96
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A7S1XX65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX65_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.080e-25 Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 1 VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
V+AF MI GNR+F KLQT PMYNYPFFL L +YVP+CF YI+PM+A+G AIT Q AIPK KF VMGLLD++AGIM
Sbjct: 144 VVAFFAMIVASLGNRVFQKLQTLPMYNYPFFLNALQVAVYVPLCFAYILPMVAYGKAITKEQLAIPKSKFCVMGLLDALAGIM 226
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A482UPU5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UPU5_9ARCH) HSP 1 Score: 99.4 bits (246), Expect = 8.310e-25 Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = 1
Query: 1 VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAG 243
+IAFV+M+F GNRIF +LQTYPM+NYP FL M+ +Y+P+C+ YI+P + F + IT QR IPK+KFAVMG DS+AG
Sbjct: 68 IIAFVLMLFFQLGNRIFGRLQTYPMHNYPLFLNMVMVAVYIPICYAYIIPAMLFTNNITKEQREIPKYKFAVMGAYDSLAG 148 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8805.20290.1 >prot_Ecto-sp13_S_contig8805.20290.1 ID=prot_Ecto-sp13_S_contig8805.20290.1|Name=mRNA_Ecto-sp13_S_contig8805.20290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp MIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSback to top mRNA from alignment at Ecto-sp13_S_contig8805:5..1014- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8805.20290.1 ID=mRNA_Ecto-sp13_S_contig8805.20290.1|Name=mRNA_Ecto-sp13_S_contig8805.20290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8805:5..1014- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8805:5..1014- >mRNA_Ecto-sp13_S_contig8805.20290.1 ID=mRNA_Ecto-sp13_S_contig8805.20290.1|Name=mRNA_Ecto-sp13_S_contig8805.20290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8805:5..1014- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |