mRNA_Ecto-sp13_S_contig8805.20290.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8805.20290.1
Unique NamemRNA_Ecto-sp13_S_contig8805.20290.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A6H5K4Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Y7_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.600e-44
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
Query:    1 VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
            VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM
Sbjct:  131 VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 213          
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A836CGK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGK6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.270e-32
Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    1 VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
            V+AFV M+FVGTGNRIFMKLQT PMYNYPF + +L+TFIY+PVCF YI+PM  FGSAIT  QRAIP+ KFAVMGLLD+VAGIM
Sbjct:   86 VLAFVTMLFVGTGNRIFMKLQTIPMYNYPFTMNLLTTFIYIPVCFAYILPMQWFGSAITAEQRAIPRHKFAVMGLLDAVAGIM 168          
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A8K1FL75_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FL75_PYTOL)

HSP 1 Score: 110 bits (276), Expect = 3.040e-27
Identity = 52/83 (62.65%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    1 VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
            V++FV M+FVG GN+IF KLQT PM+NYP FL +L+TF+Y+P+ F YI+PM+ +G+AIT  QR++PK  FAVMG LDSVAGI+
Sbjct:   14 VVSFVAMVFVGLGNKIFQKLQTIPMHNYPMFLNLLTTFVYIPISFAYIIPMIKYGTAITAEQRSVPKKTFAVMGGLDSVAGIL 96          
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A5D6XLH6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLH6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.770e-27
Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    4 IAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
            ++FV MIFVG GN+IF KLQT PM NYP FL +L+TF+Y+PV F YIVPM+ +GSAIT  QR IPK KFAVMG LDSV+GIM
Sbjct:   15 VSFVAMIFVGLGNKIFQKLQTIPMRNYPTFLNILTTFVYIPVSFAYIVPMIKYGSAITWEQRNIPKRKFAVMGALDSVSGIM 96          
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: H3GRN7_PHYRM (Uncharacterized protein n=22 Tax=Phytophthora TaxID=4783 RepID=H3GRN7_PHYRM)

HSP 1 Score: 110 bits (275), Expect = 4.300e-27
Identity = 54/82 (65.85%), Postives = 69/82 (84.15%), Query Frame = 1
Query:    4 IAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
            ++FV M+FVG GN+IF KLQT PM+NYP FL +L+TF+Y+P+ F YI+PM+ +GSAIT  QR+IPK KFAVMG LDSVAGI+
Sbjct:   15 VSFVAMVFVGLGNKIFQKLQTIPMHNYPTFLNLLTTFVYIPISFAYILPMIKYGSAITWDQRSIPKRKFAVMGGLDSVAGIL 96          
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A3F2RYX5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RYX5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.650e-26
Identity = 53/82 (64.63%), Postives = 68/82 (82.93%), Query Frame = 1
Query:    4 IAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
            ++FV M+FVG GN+IF KLQT PM+NYP FL +L+TF+Y+P+ F YI+PM+ +GSAIT  QR IPK KFAVMG LDS+AGI+
Sbjct:   14 VSFVAMVFVGLGNKIFQKLQTIPMHNYPTFLNLLTTFVYIPISFAYILPMIKYGSAITWDQRNIPKRKFAVMGGLDSIAGIL 95          
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A7R9U0X6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X6_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.440e-26
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    4 IAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
            + F  MI    GNR+F KLQT PMY+YPFFL +LS   YVP+CF YIVPM+AFG AITP Q AIPK KFA+MGLLD++AG+M
Sbjct:   79 LCFFAMIVAALGNRVFQKLQTLPMYHYPFFLNVLSVAFYVPLCFAYIVPMVAFGRAITPEQTAIPKRKFAIMGLLDALAGVM 160          
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A0P1AMR1_PLAHL (UAA transporter n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMR1_PLAHL)

HSP 1 Score: 108 bits (269), Expect = 3.130e-26
Identity = 52/82 (63.41%), Postives = 68/82 (82.93%), Query Frame = 1
Query:    4 IAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
            ++FV M+FVG GN+IF KLQT PM+NYP FL +L+TF+Y+P+ F YI+PM+ +GSAIT  Q+ IPK KFAVMG LDS+AGI+
Sbjct:   15 VSFVAMVFVGLGNKIFQKLQTIPMHNYPAFLNLLTTFVYIPISFAYILPMIKYGSAITWEQQNIPKSKFAVMGGLDSIAGIL 96          
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A7S1XX65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX65_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.080e-25
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAGIM 249
            V+AF  MI    GNR+F KLQT PMYNYPFFL  L   +YVP+CF YI+PM+A+G AIT  Q AIPK KF VMGLLD++AGIM
Sbjct:  144 VVAFFAMIVASLGNRVFQKLQTLPMYNYPFFLNALQVAVYVPLCFAYILPMVAYGKAITKEQLAIPKSKFCVMGLLDALAGIM 226          
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Match: A0A482UPU5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UPU5_9ARCH)

HSP 1 Score: 99.4 bits (246), Expect = 8.310e-25
Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 VIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGSAITPAQRAIPKFKFAVMGLLDSVAG 243
            +IAFV+M+F   GNRIF +LQTYPM+NYP FL M+   +Y+P+C+ YI+P + F + IT  QR IPK+KFAVMG  DS+AG
Sbjct:   68 IIAFVLMLFFQLGNRIFGRLQTYPMHNYPLFLNMVMVAVYIPICYAYIIPAMLFTNNITKEQREIPKYKFAVMGAYDSLAG 148          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8805.20290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4Y7_9PHAE2.600e-44100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGK6_9STRA1.270e-3277.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8K1FL75_PYTOL3.040e-2762.65Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XLH6_9STRA3.770e-2769.51Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
H3GRN7_PHYRM4.300e-2765.85Uncharacterized protein n=22 Tax=Phytophthora TaxI... [more]
A0A3F2RYX5_9STRA1.650e-2664.63Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A7R9U0X6_9STRA2.440e-2665.85Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A0P1AMR1_PLAHL3.130e-2663.41UAA transporter n=1 Tax=Plasmopara halstedii TaxID... [more]
A0A7S1XX65_9STRA1.080e-2565.06Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A482UPU5_9ARCH8.310e-2558.02Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8805contigEcto-sp13_S_contig8805:5..1014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score108.2
Seed ortholog evalue1.7e-21
Seed eggNOG ortholog164328.Phyra79554
Model size249
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG free text desc.CRT-like, chloroquine-resistance transporter-like
EggNOG OGs28IU4@1,2QR5M@2759,3QAZB@4776
Cds size231
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464153.5398562-CDS-Ecto-sp13_S_contig8805:4..891681464153.5398562-CDS-Ecto-sp13_S_contig8805:4..89Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8805 5..89 -
1681464153.552325-CDS-Ecto-sp13_S_contig8805:850..9961681464153.552325-CDS-Ecto-sp13_S_contig8805:850..996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8805 851..996 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464153.5624638-UTR-Ecto-sp13_S_contig8805:996..10141681464153.5624638-UTR-Ecto-sp13_S_contig8805:996..1014Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8805 997..1014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8805.20290.1prot_Ecto-sp13_S_contig8805.20290.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8805 5..996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8805.20290.1

>prot_Ecto-sp13_S_contig8805.20290.1 ID=prot_Ecto-sp13_S_contig8805.20290.1|Name=mRNA_Ecto-sp13_S_contig8805.20290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFGS
AITPAQRAIPKFKFAVMGLLDSVAGIM
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mRNA from alignment at Ecto-sp13_S_contig8805:5..1014-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8805.20290.1 ID=mRNA_Ecto-sp13_S_contig8805.20290.1|Name=mRNA_Ecto-sp13_S_contig8805.20290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8805:5..1014- (Ectocarpus species13 EcNAP12_S_4_19m)
GTAATAGCGTTCGTCGTTATGATCTTCGTGGGGACGGGCAACCGCATCTT CATGAAGCTGCAGACGTACCCCATGTACAACTACCCGTTCTTCCTGACGA TGCTCAGCACCTTCATCTACGTCCCCGTGTGCTTCCTGTACATCGTACCT ATGCTCGCCTTCGGGTGAGAGTCTGGTGTGGGCAGCTGTCCTCGTTGTTG AAGCAGCCCTTCGCAAAGCTTGAGAGGCATTCGTAGTGATTGTTGACGGA GCGAAACGGCTCGGTAGACTTCCTCCGTTGAGCTTGGGGAGTTTATTTTC GCCTCTAACGGCGGTGCAACAGCAACCCGTTTTCGGTGTTGGAGGTACGG AAGGCTTAAGTCTTCGATGGCGGCAGCAGCAGGAGCCGTGCCTGTTTGTT TGATCCAGACCATACGCGTTTTCGCGTCTGGAGTACTGTGTGAAGTACGA TGCAGGCCCTTGGTTTCGGTACCACCGAGCTAGCCCGTATCAGCGGGTGT GGCATGTCTGCCTTCATTGCAATAAATAGTATGCTGCGCCGTTTCCTACT GCTGCAATGTTTGGGTCAACCTCCTTACCGTACACTGTTTCTTTGTTTGC GTGGAAATCTAGAAAACTTTTTACTAAAGGGTACAAGCTCCCCATCGTCT GTCAAGAACGACTCTCTCTCTCCACACTTGTTTTAGTTCCGTCTGGCATC TTGATTTGGTTGGTCAATGAAAAGACATAATTTTAACGATTGCGTACAAC AACACGGAATCGGTGGTTTGATCCAGTGCATAGGCCTCAACAGACTCCAA CTAGAGCCCAATTTCCAGCCGGTTCCCCCTCACTCACTGGAAAAAATGGT TATATCTCCAACGAGTAGTCTTGCTAGGAAACTGTACATTTTCTCACAAT AACACGCGCGTATGTGTTGTGTCAGGTCTGCCATCACGCCGGCGCAGAGG GCCATCCCCAAGTTCAAGTTTGCGGTGATGGGTCTCCTGGATAGTGTGGC CGGCATTATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8805:5..1014-

>mRNA_Ecto-sp13_S_contig8805.20290.1 ID=mRNA_Ecto-sp13_S_contig8805.20290.1|Name=mRNA_Ecto-sp13_S_contig8805.20290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8805:5..1014- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCTTCGTGGGGACGGGCAACCGCATCTTCATGAAGCTGCAGACGTA
CCCCATGTACAACTACCCGTTCTTCCTGACGATGCTCAGCACCTTCATCT
ACGTCCCCGTGTGCTTCCTGTACATCGTACCTATGCTCGCCTTCGGGTCT
GCCATCACGCCGGCGCAGAGGGCCATCCCCAAGTTCAAGTTTGCGGTGAT
GGGTCTCCTGGATAGTGTGGCCGGCATTATG
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