mRNA_Ecto-sp13_S_contig12447.2028.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A6H5KL39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL39_9PHAE) HSP 1 Score: 462 bits (1189), Expect = 6.840e-151 Identity = 255/309 (82.52%), Postives = 258/309 (83.50%), Query Frame = 1
Query: 1 VSMGWEVEESTAALEASGGDVVAAAEALAAQEEEDLERYEEGLADLQQRGWDSDVAMSAMREAGGNSTEALHALEEEDRRVSPQGGAAVLSMQFEKSIEEMVEHGWDEEVARKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTTKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 927
VSMGWE EESTAALEASGGDVVAAAEALAAQEEEDLERYEE EEEDRR A VLSMQFEKSIEE ARKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKAST+KKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILD+YAEWCGPCKQLTPALEEAA+RSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG
Sbjct: 371 VSMGWETEESTAALEASGGDVVAAAEALAAQEEEDLERYEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEDRR------AGVLSMQFEKSIEEXXXXXXXXXXARKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTSKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDVYAEWCGPCKQLTPALEEAAIRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 673
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: D8LN57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN57_ECTSI) HSP 1 Score: 421 bits (1081), Expect = 2.440e-135 Identity = 236/309 (76.38%), Postives = 238/309 (77.02%), Query Frame = 1
Query: 1 VSMGWEVEESTAALEASGGDVVAAAEALAAQEEEDLERYEEGLADLQQRGWDSDVAMSAMREAGGNSTEALHALEEEDRRVSPQGGAAVLSMQFEKSIEEMVEHGWDEEVARKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTTKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 927
VSMGWE EESTAALEASGGDVVAAAEALAAQEEEDLERYEE RKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTTKK+EPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILD+YAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG
Sbjct: 362 VSMGWEAEESTAALEASGGDVVAAAEALAAQEEEDLERYEEXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTTKKSEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDVYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 661
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A836CN35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN35_9STRA) HSP 1 Score: 206 bits (523), Expect = 2.220e-56 Identity = 130/317 (41.01%), Postives = 175/317 (55.21%), Query Frame = 1
Query: 1 VSMGWEVEESTAALEASGGDVVAAAEALAAQEEEDLERYEEGLADLQQRGWDSDVAMSAMREAGGNSTEALHALEEEDRRVSPQGGAAVLSMQFEKSIEEMVEHGWDEEVA--RKALLMQWQKDIEGKGGSRKDQKQFE------KTVQGVHQKGVKEGKASTTKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 927
V MGW+ E + AL A DVV AAEALAA+EEED ER+ E L VAM+A R+ALL QW +DIE +GGS + KQ++ ++ K A+ K P P PA ++DVVFE T +TLQ++V+ESPVPV+LD+YA+WCGPCKQLTP LE+ A+RSGGMFR+ K+D++++RSIAE+L + A PSVF +++G I++NFVGGL DEMQ+FMM + G P D L+E Q +Q + + S L +AG
Sbjct: 115 VKMGWDPERAALALSAHNNDVVQAAEALAAEEEEDRERFSEAL-----------VAMAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQALLAQWLRDIEKQGGSERALKQYQMAGGKLRSAAPAAAAPQKAKPAAKPKDKGPAGPKPAAKKDVVFEATSETLQQLVVESPVPVLLDVYADWCGPCKQLTPMLEDMAVRSGGMFRLVKLDSQQERSIAELLKVEALPSVFALRNGAIINNFVGGLDADEMQTFMMDFLTGKTPAADAPLKERQLTQRQRKDCSFALQQMAG 420
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: W7TFJ6_9STRA (Thioredoxin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFJ6_9STRA) HSP 1 Score: 179 bits (453), Expect = 8.550e-47 Identity = 110/274 (40.15%), Postives = 154/274 (56.20%), Query Frame = 1
Query: 115 YEEGLADLQQRGWDSDVAMSAMREAGGNSTEALHALEEEDRRVSPQGGAAVLSMQFEKSIEEMVEHGWDEEVARKALLMQWQK--DIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTTKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMP-PPKDQALREHQKSQAELRGISRKLAHVAG 927
Y +G+ L +G + A+ + A G+ AL L+++ ++ E ++EEMV GWDE+VAR+ALL Q +K D+ G Q PA DVVFEVT+ LQK+V+ESPVPV+LD+YAEWCGPCKQL P LE A+++GG+FR+AKVD++K R I+E+LG+ A PSVF +DG ++DNFVG Q +Q+FM ++M P PP D H K+ +L + KLAH+AG
Sbjct: 346 YVDGVNALIGKGLSREDALELLTLAKGDLPTALEILDQD-----------AMARDLEAAVEEMVGEGWDEDVARQALLAQREKTKDLPPPAPVAGTASPSRGPPSGPLQXXXXXXXXXXXXXXXXXPVPPAAHADVVFEVTESDLQKIVIESPVPVLLDVYAEWCGPCKQLGPMLEAMAVKAGGLFRLAKVDSDKNRGISEMLGVQALPSVFAFRDGALVDNFVGMPQQATLQAFMTRLLMRSPRPPVDPLKDPHAKTAEDLEKMGSKLAHLAG 608
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A7S2FXE5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FXE5_9STRA) HSP 1 Score: 168 bits (426), Expect = 3.330e-43 Identity = 113/315 (35.87%), Postives = 169/315 (53.65%), Query Frame = 1
Query: 10 GWEVEESTAALEASGGDVVAAAEALAAQEEE-DLERYEEGLADLQQR-GWDSDVAMS-----AMREAGGNSTEALHALEEEDRRVSPQGGAAVLSMQFEKSIEEMVEHGWDEEVARKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTTKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPK--DQALREHQKSQAELRGISRKLAHVAG 927
GW+ E+ L+ + GDV AAAE LA+ EE L+R + LA L+ G+D D A A+++A GNST A +EE Q +K++ MV +GWD E A++ L + I+ + G + + N P P R+DV + VT + Q +V+ SPVPV++DI+A WCGPCK L P LE+ MR+GG FRVA+VDA+ +R + E L + A P+VF + I+D+FVG Q+++Q F+M +VM +P P+ + A E + +L+ +SR LA+V G
Sbjct: 84 GWDETEAVEGLQQTDGDVAAAAEVLASGEEALILKRTDAALATLRALPGFDDDFASEDFAKLAIKQALGNSTVARELFKEE---------MGAFRSQMDKAVARMVGNGWDAEEAKETLKRE---QIQRRNGEKVE--------------------------NSVDMPPPVDRDDVFYNVTMNSFQSMVMNSPVPVVIDIHASWCGPCKALNPILEDVVMRAGGQFRVARVDADVERELVEALEVKALPTVFVVSGCQIIDSFVGVPTQEDLQQFLMRLVMDVPRPETTEIAANETGHTDVQLKALSRSLANVVG 360
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A7R9U210_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U210_9STRA) HSP 1 Score: 154 bits (388), Expect = 4.380e-39 Identity = 103/288 (35.76%), Postives = 151/288 (52.43%), Query Frame = 1
Query: 148 GWDSDVAMSAMREAGGNSTEALHALEEEDRRVSPQGGAAVLSMQFEKSIEEMVEHGWDEEVARKALLMQWQKDIEGKGGSRKDQK--------QFEKTVQG---VHQKGVKEGKA--------------STTKKNEPPAPTPAKREDVVFEVTDKT-LQKVVLE--SPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 927
GWD+ A +A+ + GN+T AL LE E+ A + +FEK +E M +GWD +VAR+AL Q+ D + G Q+ Q T++ + ++ K KA + T +PP KREDVVFE+T LQ ++ + P V++D+YA+WCGPCKQLTP LEEAAM+ GG RV K++++K ++ G+ A PSVF DG ++DN VG Q +Q F++ M P + E + S AE ++R LA +AG
Sbjct: 58 GWDAGAAAAAVEQCDGNATAALIVLEAEE---------ATIQSEFEKGVESMCTNGWDADVARQALYHQYVLDQKRARGEPLPQQGEMPNSVAQMRPTLRAQPVLPKEKPKAPKAXXXXXXXXXXXXXLAETPAEKPPQTPTVKREDVVFELTSVAQLQPLIFDYTGPGSVLVDVYADWCGPCKQLTPVLEEAAMKLGGYMRVVKINSDKFPQLSRAFGVSALPSVFRFTDGELVDNMVGVPGQAALQKFLIDSAMSKPNAEPNPTEERKLSAAERLQMTRSLALIAG 336
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A7S3VBH3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VBH3_9STRA) HSP 1 Score: 144 bits (363), Expect = 1.420e-35 Identity = 73/149 (48.99%), Postives = 109/149 (73.15%), Query Frame = 1
Query: 487 APTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDE--MQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 927
AP PAK+EDV+F+ T +TLQK+VLESPVPV+LD+YA+WCGPCK LTPALE+ A++ GGMFR+ K++ +++R+I+ L + + P+VFG++DG I+ +F G + +DE MQ+FMMG+ +G E +++ EL S+KL + G
Sbjct: 64 APGPAKKEDVIFQATSETLQKLVLESPVPVLLDVYADWCGPCKALTPALEQMAIKGGGMFRLVKLNTDEERNISAALEVQSLPTVFGIRDGKIVHHFKG-MPRDEKMMQNFMMGL-LGAAKFNPLVTAEEKENYEEL---SKKLIKIGG 207
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A7S3Q836_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q836_9STRA) HSP 1 Score: 144 bits (363), Expect = 6.950e-35 Identity = 73/149 (48.99%), Postives = 109/149 (73.15%), Query Frame = 1
Query: 487 APTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDE--MQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 927
AP PAK+EDV+F+ T +TLQK+VLESPVPV+LD+YA+WCGPCK LTPALE+ A++ GGMFR+ K++ +++R+I+ L + + P+VFG++DG I+ +F G + +DE MQ+FMMG+ +G E +++ EL S+KL + G
Sbjct: 358 APGPAKKEDVIFQATSETLQKLVLESPVPVLLDVYADWCGPCKALTPALEQMAIKGGGMFRLVKLNTDEERNISAALEVQSLPTVFGIRDGKIVHHFKG-MPRDEKMMQNFMMGL-LGAAKFNPLVTAEEKENYEEL---SKKLIKIGG 501
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A7S2YE07_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YE07_9STRA) HSP 1 Score: 143 bits (361), Expect = 1.220e-34 Identity = 73/149 (48.99%), Postives = 102/149 (68.46%), Query Frame = 1
Query: 481 PPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVG-GLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVA 924
PPAP AK+ DVVFE T +Q++VLESPVPV+LDIYA+WCGPCK L PALEE A++SGGMFR+ KV+++ +R ++ L + A P+VFG+KDG I+ F G + ++MQ+FMMG+++G K E + EL K+A +
Sbjct: 307 PPAPKEAKKSDVVFEATTAQIQELVLESPVPVLLDIYADWCGPCKVLGPALEEMAVKSGGMFRLVKVNSDNERPVSTALEVTALPTVFGVKDGRIVHMFQGMPKSPEDMQNFMMGLMVGESSFKPPLTTEQKDKYVELTNKLVKMASTS 455
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A448ZQ02_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQ02_9STRA) HSP 1 Score: 140 bits (353), Expect = 1.340e-33 Identity = 69/133 (51.88%), Postives = 96/133 (72.18%), Query Frame = 1
Query: 457 ASTTKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVG-GLAQDEMQSFMMGVVMGMP--PP 846
A + N P PAK+EDVVFE T LQK+VLESPVPV+LD+YA+WCGPCK L PALE+ A++SGGMFR+ K++++ +R +++ L + A P+VFG+KDG I+ F G ++D M++FMMG+ P PP
Sbjct: 277 APASSSNSDNMPKPAKKEDVVFEATTDQLQKLVLESPVPVLLDVYADWCGPCKVLGPALEDMAIKSGGMFRLVKINSDNERPVSQALEVAALPTVFGIKDGKIVHKFEGMPKSEDMMRNFMMGLFGAAPFSPP 409 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12447.2028.1 >prot_Ecto-sp13_S_contig12447.2028.1 ID=prot_Ecto-sp13_S_contig12447.2028.1|Name=mRNA_Ecto-sp13_S_contig12447.2028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp MGWEVEESTAALEASGGDVVAAAEALAAQEEEDLERYEEGLADLQQRGWDback to top mRNA from alignment at Ecto-sp13_S_contig12447:744..4575- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12447.2028.1 ID=mRNA_Ecto-sp13_S_contig12447.2028.1|Name=mRNA_Ecto-sp13_S_contig12447.2028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3832bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12447:744..4575- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12447:744..4575- >mRNA_Ecto-sp13_S_contig12447.2028.1 ID=mRNA_Ecto-sp13_S_contig12447.2028.1|Name=mRNA_Ecto-sp13_S_contig12447.2028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12447:744..4575- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |