prot_Ecto-sp13_S_contig8784.20257.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8784.20257.1
Unique Nameprot_Ecto-sp13_S_contig8784.20257.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length228
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8784.20257.1 vs. uniprot
Match: A0A6H5KGI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI3_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 4.170e-111
Identity = 200/227 (88.11%), Postives = 204/227 (89.87%), Query Frame = 0 
Query:    1 MRMGPSMPLLGALLGAGLTATSAFISTFPVVSSRLSARQQHQPCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGEGLTELGSMVSCALGEAHASAMASGLGTFLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIRTMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDDALSERLSQQTTKALQTDIASIEDEYGD 227
            MRMGPSMPLLGALLGAGLTATSAF+ST PVVSS LSARQ       XXXXXXXXXXXXXXXXXX         VGGEGL ELGSMVS A+G+AHASAM SG+GTFLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIR MPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPD ALSERLSQQTTKALQTDIASIEDEYGD
Sbjct:    1 MRMGPSMPLLGALLGAGLTATSAFVSTTPVVSSSLSARQL-VXXXXXXXXXXXXXXXXXXXXXXRAMLFGGGGVGGEGLAELGSMVSGAVGQAHASAMGSGMGTFLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIRNMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDGALSERLSQQTTKALQTDIASIEDEYGD 226
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BLAST of mRNA_Ecto-sp13_S_contig8784.20257.1 vs. uniprot
Match: D7FMV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV7_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 9.570e-61
Identity = 108/123 (87.80%), Postives = 108/123 (87.80%), Query Frame = 0 
Query:  105 FLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIRTMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDDALSERLSQQTTKALQTDIASIEDEYGD 227
            FL LA      P     V   GFFIIFSGVFSAYIIATMIRTMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDDALSERLSQQTTKALQTDIASIEDEYGD
Sbjct:   13 FLRLAFSCLLHPFSTRFVFHRGFFIIFSGVFSAYIIATMIRTMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDDALSERLSQQTTKALQTDIASIEDEYGD 135
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8784.20257.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGI3_9PHAE4.170e-11188.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV7_ECTSI9.570e-6187.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 165..185
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 122..144
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..121
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 145..227
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..23
score: 0.507
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 127..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8784contigEcto-sp13_S_contig8784:706..6044 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8784.20257.1mRNA_Ecto-sp13_S_contig8784.20257.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8784 706..6626 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8784.20257.1 ID=prot_Ecto-sp13_S_contig8784.20257.1|Name=mRNA_Ecto-sp13_S_contig8784.20257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
MRMGPSMPLLGALLGAGLTATSAFISTFPVVSSRLSARQQHQPCSSSSGR
TTPATANSRRRTATTAMLFGGGGVGGEGLTELGSMVSCALGEAHASAMAS
GLGTFLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIRTMPID
QLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDD
ALSERLSQQTTKALQTDIASIEDEYGD*
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