mRNA_Ecto-sp13_S_contig8784.20257.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8784.20257.1
Unique NamemRNA_Ecto-sp13_S_contig8784.20257.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8784.20257.1 vs. uniprot
Match: A0A6H5KGI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI3_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 2.430e-108
Identity = 200/227 (88.11%), Postives = 204/227 (89.87%), Query Frame = 1 
Query:    1 MRMGPSMPLLGALLGAGLTATSAFISTFPVVSSRLSARQQHQPCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGEGLTELGSMVSCALGEAHASAMASGLGTFLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIRTMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDDALSERLSQQTTKALQTDIASIEDEYGD 681
            MRMGPSMPLLGALLGAGLTATSAF+ST PVVSS LSARQ       XXXXXXXXXXXXXXXXXX         VGGEGL ELGSMVS A+G+AHASAM SG+GTFLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIR MPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPD ALSERLSQQTTKALQTDIASIEDEYGD
Sbjct:    1 MRMGPSMPLLGALLGAGLTATSAFVSTTPVVSSSLSARQL-VXXXXXXXXXXXXXXXXXXXXXXRAMLFGGGGVGGEGLAELGSMVSGAVGQAHASAMGSGMGTFLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIRNMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDGALSERLSQQTTKALQTDIASIEDEYGD 226
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BLAST of mRNA_Ecto-sp13_S_contig8784.20257.1 vs. uniprot
Match: D7FMV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV7_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 1.900e-58
Identity = 108/123 (87.80%), Postives = 108/123 (87.80%), Query Frame = 1 
Query:  313 FLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIRTMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDDALSERLSQQTTKALQTDIASIEDEYGD 681
            FL LA      P     V   GFFIIFSGVFSAYIIATMIRTMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDDALSERLSQQTTKALQTDIASIEDEYGD
Sbjct:   13 FLRLAFSCLLHPFSTRFVFHRGFFIIFSGVFSAYIIATMIRTMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDDALSERLSQQTTKALQTDIASIEDEYGD 135
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8784.20257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGI3_9PHAE2.430e-10888.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV7_ECTSI1.900e-5887.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8784contigEcto-sp13_S_contig8784:706..6626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1266
Hectar predicted targeting categorychloroplast
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002670.1
Cds size684
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464150.8471546-CDS-Ecto-sp13_S_contig8784:705..7821681464150.8471546-CDS-Ecto-sp13_S_contig8784:705..782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8784 706..782 +
1681464150.8617508-CDS-Ecto-sp13_S_contig8784:4122..44191681464150.8617508-CDS-Ecto-sp13_S_contig8784:4122..4419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8784 4123..4419 +
1681464150.8768878-CDS-Ecto-sp13_S_contig8784:5155..52431681464150.8768878-CDS-Ecto-sp13_S_contig8784:5155..5243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8784 5156..5243 +
1681464150.8947396-CDS-Ecto-sp13_S_contig8784:5822..60441681464150.8947396-CDS-Ecto-sp13_S_contig8784:5822..6044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8784 5823..6044 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464150.9066803-UTR-Ecto-sp13_S_contig8784:6044..66261681464150.9066803-UTR-Ecto-sp13_S_contig8784:6044..6626Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8784 6045..6626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8784.20257.1prot_Ecto-sp13_S_contig8784.20257.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8784 706..6044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8784.20257.1

>prot_Ecto-sp13_S_contig8784.20257.1 ID=prot_Ecto-sp13_S_contig8784.20257.1|Name=mRNA_Ecto-sp13_S_contig8784.20257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
MRMGPSMPLLGALLGAGLTATSAFISTFPVVSSRLSARQQHQPCSSSSGR
TTPATANSRRRTATTAMLFGGGGVGGEGLTELGSMVSCALGEAHASAMAS
GLGTFLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIRTMPID
QLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDD
ALSERLSQQTTKALQTDIASIEDEYGD*
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mRNA from alignment at Ecto-sp13_S_contig8784:706..6626+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8784.20257.1 ID=mRNA_Ecto-sp13_S_contig8784.20257.1|Name=mRNA_Ecto-sp13_S_contig8784.20257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5921bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8784:706..6626+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCATGGGACCCAGCATGCCGCTGCTTGGAGCTTTGCTCGGAGCCGG
GTTAACCGCGACCTCGGCGTTCATTTCGTGAGTTTGTGATGCAGGTTGCA
CATTCGTGTGTCGGTGCAACACCGCCGTGTCCATACTCGATGTCGTTGCC
CGTCGCATGTTGCCCTTTGAAGTTGAACCTGGATCAGCCGCAGGTTCGCG
GTTCCTCTCTGCCGCATCAATAGCTATGCGCTTGCATCCACTACCTGCGG
TTGGTATCATAACGTTGCTGCCACCACCCGAAGAGATAAAATCATTGAAG
CAAGGGCAGCTATCTCTGTGGTGCCGTGTAGAGTCTAGAGCCACAGCTCC
AGATCTTCGCCTACTGAATCCTTCTGCGGTGTGGTGGCAGCGACCACGGA
AAGGCAAGAAGACATCCAACAAACCGCAAATCATGAACACGTGTCCTTCA
CCAGTTTACTCCCCAAGCTATCCGGGTGTTATACTTGCTGAAAAAGTTGG
GAACATATGCGTACGTATGCATGCCTATGGTAGGGTAGGAAGGCGATACA
GTACAGGAGTACGTCGTGCGAGATGTCGATAAGTCTTGAGGCCACGCGCG
CTTCCGTGTGGCACTCAGTGCTCGATGGCCATCCTGTGTAGTAGATACGA
TACCCCCTCCCCCTCCCCCCCAGGCCTTGGCAGCACCTCTGCGCTGGACC
GTTTCGGGATCACGATGAGCCCCACGGTATCCATGCCACACACTAATGGG
CTTGTCCTATGGCTACTCGAGTCTTTGAGCTCGATATATGATATATATCC
AGCCGGCGGGGAAACTACGGAAATTCCGCCGCGGTGGGTTTCTAAACGCT
TTGCCGTTAAATGTTTCTACATATGATGCTTAGTCTTACGGTGTGATTAT
TTCCGGATTGGATTTGGGGGAGGGTCCTCTTCTGATCCAAAAAAATAATG
TGGGCGTCTAACGGGCAGGAAAATGGCATTTTCCAACAGCACAAAATGTA
ACAGCGCAGTTTCCAACAGCGATTCCGACCGGCCTGTTTGAAAATTGGCC
CATTTTCCAACAGCGATCCTGTTGGAATATCGCTGTTAGAAATGTGGGGA
GTTACCCCCTGGTCACACCCCGATCGTGCCAGAACGAGGAACTACACCGT
CTGCTGGCTAAACACAGGCCAGTATCATAAGGTCATGCACAAATCATCTG
CAGGTATCTGAAATTCCGGGCGTTCTGCGTCGTGTTGGCCGCACACGAGG
CGAAAATGTCAACCCTGCCACATTGCTCTGCTGACGTTCTTGCCTTAGGG
CAGAACAGAGCCGTTTTTGCGCCTGCTGTATGTGTGACCAGTTCAAAACG
CATTCCAGAAAAAGGCATTACGCCGTCCACATCTACAAGCTGCAGCCATG
GGCGTGTGGTCATACTCATACCCTACGCTCGCGTACCAGAAACAGAGCGT
ATTGTCCAGTTTTGATTGCACACGTGCTGCAAACGTGAACCAAAGTGTGT
TGCGGTGTGAACTTTTTGGTCTTTTTTTTTGTTCCGCCGTGTGTTTGCTT
CATGTGTCACCGGCGGCCAGTCAACAACGCATGCCAGAGAGAGGCCTTTG
GCCGACGACACCCACAAACAGCAGCCAGTGACATGTGGTCATACACATGC
CCTCTGCTCGCATCCCAGAAACAGAGCGTATTGTTCACTTTTGATTGCAC
ACGGCCTGCAAACGTGAATCGAGGTGTGGTTCGGTGTTGCCTTTTTTGGG
CGTTGCTTTTTTTTTTCTGCCGCTTGGTCCGAGTCGAGTGCGATCAGTGT
ACAACGCATGCCATCAGAGAGAGGCCTTTGGCCGACGACATACACAAACT
GGAGCCACTGGCGTGCGATGATACACATGCCCTCTGCAGGCGACCCATAA
ACAGGGCGCTCGGTGTCTTGTCGGTCGCACACGAGCCAAAACCCTGAACT
GACCCATTTTGTGACTCACAAGAACATGTCTCTTTTTTTCCTTCAGAAAA
AAAAATTCCTCGAGGAAGACGGTCGTTTGGATCTTGATAATTATTTCCGT
GCAGGCCACCCCCCCCTGACCGAGAGAAAAAATATATCTCCGAAATAGTC
ACACCGCAAGACTGAGCCTTAGCGAAAATAATAAACTTTAGAACGCACCG
CAGGAGGAAGGTGAGGCACGAAAATAAAAATAAAAATAAAATAAAAGACC
TGGTGTTTACTCCCTCCGTGTGACCCTGGATGGTTGTAGTTGTACGAAAA
ATAACACTGAAAAGTAACAAAGTATTGTACGTACGCTGTAAGAGTGCAGT
ACATACACGTCTTACCACGAGAAATGGACTGTAGCCATCATGAATAGGAC
GAAAACACACAAAAACACACACACACCGATCGCAGAACACCACATGAGTG
TGGCAATCTTGGATTTCCTTTGAAGTGTGCGCTGCTGTGGAGCCGCTTTG
CCAGCATTCCCAACGCTATCGGCTTTTCTTCGTCCCTGAAGAGATATATC
GGCGCCCTCCCTGCCGGCTGCACACAACCCACACGCAAGTGGCAAAACAT
GCATCCCAACACCATGAAACCCCTGAGACTTGCTGACCTGCGCTGGATAG
CGTGCGAGGGTACACTGATGTAAACGCATGCCGTAGTCGTTAGACCATTG
GCCTCGCATCCCTGCAACGCCGGGGCGGAGGAGCGATAATATGACGGGTT
TTCGCCGCCCCAGGCTATCTTTCACAAGCATGAACCAGAAGCTGGCCATC
ACCCTTGCACCCTTGCGTTTTCGTGCGTTTTCTGTTGCAAACCAGATATG
TCATGGGTTGATTGGCCATCCCGGCCAACAAAGGTTGCCCTGGATAGTGC
AAGGGAGGCTCATTTTGTGCTTTCCTATCGAACCGTGCTCCCAGGCGCGC
ACGACCACGAGCATAGAGTCCCATACATGGCAAGTTGGTGTTTGTTCCAA
AATTCCGTCGAGGCACAGCGCCGTATCCCGGGCCCTTTGTGTGGTGTGCT
CACAGCTCCTGAGCCGCATCTGCAGCTGACCGTCTCATCTGAACATCGCA
CCACACGTTAGCGCGGGGCTGGCCATATCAATATCACTGAACAACATTGG
TTAAGCCAGGAATTCTGTGTGTGGTTACAATGTTGGTGCCAGGGGCCAAT
GTTGCACTCACAGAAGAAGCAGCATTTCGTTGAAACGGATGTCGTTCACA
TACCTGGCACCCGAACACATTCTTGGGACGGGCGGCATCCGCTGTGGGCC
GGCGGTGCAGCGCCTACCCATCATCTCAACCCGCCTGTGTGTGTGCGTTG
TTCTGTGTCCCATCTGCGTTTACTTGACCGTTGATCGGAAATACCCCGTA
AGTCAGAGTATAACGCCCAACCCCCCCTGCCGTGCCCTGTCAACTCTTGT
TATGTATCCGAAACCAGGACATTCCCCGTAGTGTCCTCACGCCTGTCCGC
TCGCCAGCAGCACCAACCATGCAGCAGCAGCAGCGGCAGAACAACACCAG
CCACAGCGAACTCTCGACGGCGAACAGCTACAACGGCCATGCTATTTGGG
GGCGGAGGAGTAGGCGGGGAGGGCTTGACGGAGCTCGGGTCGATGGTGTC
CTGCGCATTGGGGGAGGCGCACGCGAGCGCGATGGCTTCTGGCTTGGGTA
CCTTCCTCCTCCTCGCGGATGATCCGCCGGCGCCCCCCAACATCTATGGC
GAAGTCGCACAGGGGTGAGTGTTGGGAACGATGTGCGCGAGGTTTGTGCT
ACTTGTAGTACGTCTCATCTAATCTAGTATGATGTGTTGGGGTGAGTGAG
AGATGATCGTTTGCTCGTACTATCACTTTGTTCTGTGTGAACGAATGTCA
GGTGCTTGTTTTCCGGGCCGTCCATTTCAGCCCTCGCACACGTTGTTGGC
CTTGTGGTCTGCATCCTTATGACTGCAGCGGAAACCGTGAAAAGCTTAAG
CGTGGGCTATATTATCCAGGGTGTTGAACGAACAGGAAGGGGCATCCCCG
TATTTTTTGTTGTGGACATATTGTTCCTGCAATCGCCAATCGACTGGCAC
GTTCTCCTGTTTCTTGGTTGAGGTCGATTGCTACTTACAACGACAAGGAT
TGGATCACCTGTTCTTACGACTGTACAGCTGTGTTTCGATAGGTGCTGTC
AAGACGGACGCTGTACTCCAGCAGCAGCTGCAACCGTTTTGGTTTTTCCA
GGTTCGATCGACACCGAGCTTCCTAATTCCCACGGTGTCGACCCAGCAAC
AAAGCAGGCCCCACGTATATCTACCAATCCCCACCGTAGTCATGTAGCGT
AGCCCCGTACCCTGCGCGCACGACGCTGGCGATCCCGCCATTTTTCCACC
CTTTTAACACTCACCGTCCTTTTTCGGTTCCGGATTGTTTCCCTCGCCTG
GCCTTTTCTTGTCTCCTGCATCCGTTCTCGACATGCTTTGCTTTCCACAG
AGGGTTTTTCATCATCTTTTCCGGCGTCTTCTCGGCGTACATCATCGCCA
CGATGATCCGCACCATGCCGATCGACCAGTTGGAGAAGGTGCGTGGTGGG
TGTTAGTGTCCTGGCTGCTCTGCTTATCTTGTTGGTGCCGTCGCTGTGCC
TGTGCGTAGTCTCGCTCGCGCTCGTTTGTTTGTTCTTGCTGTCGTGCTGT
TGCTGCAGCAGCGTAGCATTTTCTTGACTTAAGGCCACTTAAAACCTTCA
CTCTGTACTCTCCCCAATACATTTGTAAAAGTACATCTAACGCACAACTG
GAGGATGAGATAGGAGGCGGCCGGGGAATCCACCGAGTCGGTGCTTTCGT
GCGGTCGGGCCTGTCTGTGCCTCGAAGGATAATTGCTGCTGCTGCTCTGC
TGCTGCTGCGGTGTTGCCGGTTTGTTGTTGTGTCTCGAAACTCTTCAGCT
CACCGTCGATCGAGAGAACCCCGAATCACAACAGAAGAACACAACGAGAT
GCTGAACCACGAAACAGAACCGGGAAACAAGCCAGAAGCCGGACCGAAAC
TGTGCCAAATCCTCAGGGACACTGAAGAACTTTAACACGACCAAAACTCA
CCAACATCTACGCGACATCAATAAACTCACAATCAATCGGTACTTGCAAC
CCACCACGAAATGGCAGCTCACGGCCGAGCTCGGGGGCGGAAACGAGATC
GCCGACTTGGAGGCGCAGAGGATCGAGACCACCAAGAGGTTTAAGGAGCT
CACTAAGGACATGGCGCAGGCCGCGGACCCTACGATGGGGGTTAAGCCTG
ACGACGCGCTCTCGGAGAGGCTGAGCCAGCAGACGACGAAGGCGCTGCAG
ACGGACATCGCATCCATAGAGGACGAGTATGGGGATTAAACTAGACTGGA
CGCCGAGGATTCTTTGTTGTTTGGGTGGGTGAGGTTTTTTTTGCGGTTTC
CCGAATCGTTGGTTGTTGGCTGCTTTGACTCGTTATGACTTATGGGGATT
TTCGGCTTAACTGTCTTTCTCTCTGGTTATTTCGGGTTCTCTCTCTCGCA
GTTCATGGTCGCCTGTGTTCGTCGTCGTCTCTTCTTGAGAGGAAAGGGGT
TTGTTTTCCCTCTGTCCGCGGTTCTAGAGCCCGAATCCGAACACCGCGCT
GATTTATTTCCCGAGCGCCATATGGGAAGCTTCGTCTATCTTCCGTTTTG
GTAGGGCGCGATGGTACGGACAACTCTAGAGACGGAATTTTTTTGCGGCC
TGTTGGTCTCGAATGACGAGTACGTTGTGCAAGGTTATTTCTCTTTCCTC
TTGTAGTAATATCCAGAAGTATTCGGTTTTCGAGGAGCCTTGGTTGAAGT
CGACTGGACCAAAGATAGAGCAGTAGAACGTGATGCTCTCCGCCTGTCTA
GACTACAGTACCTGCAGCGTTTGGAGAATATACTATTTTGTTGAAAATGA
CGCGTTTTTCTTTTCAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8784:706..6626+

>mRNA_Ecto-sp13_S_contig8784.20257.1 ID=mRNA_Ecto-sp13_S_contig8784.20257.1|Name=mRNA_Ecto-sp13_S_contig8784.20257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8784:706..6626+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCATGGGACCCAGCATGCCGCTGCTTGGAGCTTTGCTCGGAGCCGG
GTTAACCGCGACCTCGGCGTTCATTTCGACATTCCCCGTAGTGTCCTCAC
GCCTGTCCGCTCGCCAGCAGCACCAACCATGCAGCAGCAGCAGCGGCAGA
ACAACACCAGCCACAGCGAACTCTCGACGGCGAACAGCTACAACGGCCAT
GCTATTTGGGGGCGGAGGAGTAGGCGGGGAGGGCTTGACGGAGCTCGGGT
CGATGGTGTCCTGCGCATTGGGGGAGGCGCACGCGAGCGCGATGGCTTCT
GGCTTGGGTACCTTCCTCCTCCTCGCGGATGATCCGCCGGCGCCCCCCAA
CATCTATGGCGAAGTCGCACAGGGAGGGTTTTTCATCATCTTTTCCGGCG
TCTTCTCGGCGTACATCATCGCCACGATGATCCGCACCATGCCGATCGAC
CAGTTGGAGAAGCTCACGGCCGAGCTCGGGGGCGGAAACGAGATCGCCGA
CTTGGAGGCGCAGAGGATCGAGACCACCAAGAGGTTTAAGGAGCTCACTA
AGGACATGGCGCAGGCCGCGGACCCTACGATGGGGGTTAAGCCTGACGAC
GCGCTCTCGGAGAGGCTGAGCCAGCAGACGACGAAGGCGCTGCAGACGGA
CATCGCATCCATAGAGGACGAGTATGGGGATTAA
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