mRNA_Ecto-sp13_S_contig8783.20256.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8783.20256.1
Unique NamemRNA_Ecto-sp13_S_contig8783.20256.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8783.20256.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 491 bits (1264), Expect = 6.830e-146
Identity = 311/340 (91.47%), Postives = 323/340 (95.00%), Query Frame = 1 
Query:    1 QMSLQGSQCLELLHTLLARKGVPTPPPDSDDIDEDDLGLHAARERQEGGHRVSGVADLTTPENNSENGNPRAPSRSATAPPAXXXXXXXXXXXXXXXXXXXXXXMHLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANEKQAQSPNPPPETFNPFSTAKKGAGKNVVDTSSIATAATSAADILDSGSPVDLSAFYMELRRLAQDDPEDYAGWEGLEEAVSDGQDGGGGGETDAGSGSDNNAPKERGKKRGLATSTGGARATKRRASAGDALPTAKKRGGVGGRGKGAKAKGKKAKTARRRKSTGGLAAISDXXXXXXXXXXXXXEDWA 1020
            QMSLQGSQCLELLHTLLARKGVPTPPPDSDDIDEDDLGLHAARERQEGGHRVS VADLTTPEN+S+NGNPRAPSRSATAPPAXXXXXXXXXXXXXXXXXXXXXX HLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANEKQAQSPNPPPETFNPF+TAKKGAGK+VVDTSSIA AATSAA++L+SGSPV+LSAFYMELRRLAQDDPEDYAGWEGLEEAVSDGQDGGGGGETDAGSGSD+N PK+RGKKRGLA+STGGA         GDAL TAKKRGGV GRGKG + KGKKAKTARRRKSTGGLAAISDXXXXXXXXXXXXXEDWA
Sbjct: 1902 QMSLQGSQCLELLHTLLARKGVPTPPPDSDDIDEDDLGLHAARERQEGGHRVSVVADLTTPENSSQNGNPRAPSRSATAPPAXXXXXXXXXXXXXXXXXXXXXXXHLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANEKQAQSPNPPPETFNPFTTAKKGAGKSVVDTSSIAAAATSAAEVLNSGSPVELSAFYMELRRLAQDDPEDYAGWEGLEEAVSDGQDGGGGGETDAGSGSDSNVPKKRGKKRGLASSTGGAXXXXXXXXXGDALSTAKKRGGVAGRGKGVRTKGKKAKTARRRKSTGGLAAISDXXXXXXXXXXXXXEDWA 2241
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8783.20256.1 vs. uniprot
Match: A0A6H5JQE5_9PHAE (Sister chromatid cohesion protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE5_9PHAE)

HSP 1 Score: 424 bits (1090), Expect = 9.750e-130
Identity = 258/340 (75.88%), Postives = 266/340 (78.24%), Query Frame = 1 
Query:    1 QMSLQGSQCLELLHTLLARKGVPTPPPDSDDIDEDDLGLHAARERQEGGHRVSGVADLTTPENNSENGNPRAPSRSATAPPAXXXXXXXXXXXXXXXXXXXXXXMHLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANEKQAQSPNPPPETFNPFSTAKKGAGKNVVDTSSIATAATSAADILDSGSPVDLSAFYMELRRLAQDDPEDYAGWEGLEEAVSDGQDGGGGGETDAGSGSDNNAPKERGKKRGLATSTGGARATKRRASAGDALPTAKKRGGVGGRGKGAKAKGKKAKTARRRKSTGGLAAISDXXXXXXXXXXXXXEDWA 1020
            QMSLQGSQCLELLHTLLARKGVPTPPPDSDDI+EDDLGLHAARERQEGGHRVSGVADLTTPE+NSENGNPRA SRSATAPPA                      MHLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANEKQAQSPNPPPETFNPF+TAKKGAGKNVVDTSSIA AA SAA++LDSGSPV+LSAFYMELRRLAQDDPEDYAGWEGL+EAVSDGQDG                                        SAGDAL TAKKRGGVGGRGKG KAKGKK KTARRRKSTGG A +SD    XXXXXXXXXEDWA
Sbjct:  551 QMSLQGSQCLELLHTLLARKGVPTPPPDSDDIEEDDLGLHAARERQEGGHRVSGVADLTTPEHNSENGNPRALSRSATAPPAVGGDGASSAAGMGAANAEEENMMHLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANEKQAQSPNPPPETFNPFTTAKKGAGKNVVDTSSIAAAAASAAEVLDSGSPVELSAFYMELRRLAQDDPEDYAGWEGLQEAVSDGQDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGDALSTAKKRGGVGGRGKGVKAKGKKPKTARRRKSTGGFAGVSDSSGRXXXXXXXXXEDWA 890
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8783.20256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSV8_ECTSI6.830e-14691.47Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
A0A6H5JQE5_9PHAE9.750e-13075.88Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8783contigEcto-sp13_S_contig8783:30..5641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score494.6
Seed ortholog evalue3.7e-137
Seed eggNOG ortholog2880.D7FSV8
Model size3039
KEGG koko:K06672
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.cohesin loading
EggNOG OGsKOG1020@1,KOG1020@2759
Cds size1020
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8783.20256.1prot_Ecto-sp13_S_contig8783.20256.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8783 33..3625 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464150.735936-UTR-Ecto-sp13_S_contig8783:29..321681464150.735936-UTR-Ecto-sp13_S_contig8783:29..32Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8783 30..32 +
1681464150.8205156-UTR-Ecto-sp13_S_contig8783:3625..56411681464150.8205156-UTR-Ecto-sp13_S_contig8783:3625..5641Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8783 3626..5641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464150.7476501-CDS-Ecto-sp13_S_contig8783:32..901681464150.7476501-CDS-Ecto-sp13_S_contig8783:32..90Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8783 33..90 +
1681464150.7584336-CDS-Ecto-sp13_S_contig8783:667..9091681464150.7584336-CDS-Ecto-sp13_S_contig8783:667..909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8783 668..909 +
1681464150.7706366-CDS-Ecto-sp13_S_contig8783:1460..16011681464150.7706366-CDS-Ecto-sp13_S_contig8783:1460..1601Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8783 1461..1601 +
1681464150.7849083-CDS-Ecto-sp13_S_contig8783:1857..20191681464150.7849083-CDS-Ecto-sp13_S_contig8783:1857..2019Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8783 1858..2019 +
1681464150.796049-CDS-Ecto-sp13_S_contig8783:2779..29971681464150.796049-CDS-Ecto-sp13_S_contig8783:2779..2997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8783 2780..2997 +
1681464150.8084755-CDS-Ecto-sp13_S_contig8783:3426..36251681464150.8084755-CDS-Ecto-sp13_S_contig8783:3426..3625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8783 3427..3625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8783.20256.1

>prot_Ecto-sp13_S_contig8783.20256.1 ID=prot_Ecto-sp13_S_contig8783.20256.1|Name=mRNA_Ecto-sp13_S_contig8783.20256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=340bp
MSLQGSQCLELLHTLLARKGVPTPPPDSDDIDEDDLGLHAARERQEGGHR
VSGVADLTTPENNSENGNPRAPSRSATAPPAVGGGGSSSAAGMGAANAEE
ESMMHLRKTCSAAAAFSMLLRLKVYLKSAYGLTAARCQSYKPNEATKANE
KQAQSPNPPPETFNPFSTAKKGAGKNVVDTSSIATAATSAADILDSGSPV
DLSAFYMELRRLAQDDPEDYAGWEGLEEAVSDGQDGGGGGETDAGSGSDN
NAPKERGKKRGLATSTGGARATKRRASAGDALPTAKKRGGVGGRGKGAKA
KGKKAKTARRRKSTGGLAAISDSSERDDDDDEDDDEDWA*
back to top

mRNA from alignment at Ecto-sp13_S_contig8783:30..5641+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8783.20256.1 ID=mRNA_Ecto-sp13_S_contig8783.20256.1|Name=mRNA_Ecto-sp13_S_contig8783.20256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8783:30..5641+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGTCGCTGCAGGGGAGCCAGTGCCTGGAGCTGCTGCACACTCTCCT
GGCGAGAAAGGGTGAGCGTCTTGCCGGTTCAAGTTTTGGTTCCCACTCTT
CATGGTCACCGAGAGTTTGTGTAGATCGGTGCCAGAATGAACGGGAGACT
ACACACAATGCACACACACTGTGGTATTGGGTCATCTTCTTGTTGTCCGG
AAGCAAGGCACTGTCGTCCTACCTCGCCCTCGCCCTTGCCAGAGGAGATC
CGTTGCCTAGAAAGCGTACTCGTTTTTTTTTTTTTTTTTCCCGGTCTACA
AGATTGCCGTTTTTTAATTAGCGAGCCGCTTAGCGCGGTCGATGCTAATG
AAAGAATAGTCATACCCACGTGCTCGGGGGTTCGCTGTCGGATGTTGCGG
TCTTGGGATGGAGCTGCGGGAAACGTGTTTGTGGTCTTTGAGGTACACTG
TGTACATCATGCGAAAAAGCGGCCAGTTTATCGCCGCATATACTGGACTT
GTCTCATTTTTTTTTTGTCACGTTCGGGATGACCCTACATAAAAGTCAAG
AATCCCCCCCCTTCCCCCCCTTTTTTTGTTTTTTTCTTCTTTCTTTTCTC
TTTCCGTTTCTATTCCCCCCCCCCGATCCGCATTTCAGGCGTGCCGACGC
CCCCCCCAGATAGCGACGACATTGACGAAGACGATCTGGGCTTGCATGCG
GCGAGAGAGCGTCAGGAAGGAGGGCACCGGGTCAGCGGTGTCGCCGATCT
CACCACCCCGGAGAACAACAGCGAAAACGGTAATCCGCGGGCCCCCTCGC
GCTCCGCTACGGCGCCCCCCGCCGTGGGCGGCGGCGGGTCGTCATCGGCA
GCGGGTATGGGAGCGGCCAATGCGGAAGAGGTGCGTCGTCCGTGTTTCGT
TTGTACGTGTTTGTGATATTGCTGTTGATGCTGCTCTCCCAACCTGTATG
ATTCGGTTTGCATGTCTTTTGTGATCTCCGAGCTGCGTGTTTTTCACAGT
GTTTACGCTGTAGTACTATATTTGTGCTTTTGGTGGCTGCAACCATTTTG
TGTCCATTCTAAATCGCTCGGTTATTGTTTCTCCCGTCTTTGCAGAGTCC
TTTGGTTTGCTTCAGTTATTTGGTTTTTGGAAAATCTCGAAGGAAAAAAA
TGCGCGTGGTGTTGCCTACACTAATTTTGTACTTCAACGCACGTCCACAG
CCTTTTTTTTTTTTGCTCAGCCTCAAATGACCGGGTCTATCCATGTTGTC
CTGGATGAAGATGACCACCATTTTCCAGCCAAACACGAAAGGGTAGGCAG
AATGAAACGGCCGAACACAGCGTCAAGACACCAAATGTTCCCCAGAGGAT
GGCTTCCCTCCCCCCTCACTCGGTCGCGTTCCTCTCTGTGGCAACACACA
CACGTACGCGTTCCGGAACCCGTGGTGGCAGGAGAGCATGATGCATCTGA
GGAAGACGTGCTCCGCAGCCGCGGCGTTTAGCATGCTGCTTCGGCTCAAG
GTTTACCTCAAGTCGGCTTACGGGCTGACGGCCGCTAGGTGCCAGTCGTA
CAAGCCTAATGAGGCCACGAAGGTGAGAAGGCCAACAGGGAATGGCTAGA
GATCAAAGACTACCAAGTACAACAGATGCACCAAACATGGGCAGTACGGG
AGCCGAAAGGGCCAGCAGGGAAAGACGGACGCCAACGAGCACCGACAAAG
CCCTCGATGAAAGAGACACTGACATGTTCAACCCTACCAAGGACTACCAT
GCAGCCCCTTCCCCCTTGACACACTCCGTCCGCTGCCAACGCTTGCCTTG
ATGAATTCGGCCTCTTTTTCACTGCCAGGCCAATGAGAAGCAAGCGCAAT
CCCCGAATCCTCCCCCTGAGACGTTCAATCCCTTCAGTACGGCCAAGAAG
GGAGCAGGGAAGAACGTTGTGGACACCTCTTCCATAGCAACTGCGGCCAC
GTCAGCCGCGGACATCCTGGACTCTGGGTCTCCGGTGGATGTGAGTCGCG
GTGTCTTGCCTCTCAAGTGGAGTGTTTGTCTTTATGATCGTGTGGGCGTT
GTAGTGGTCTGTGCAGGAACGGCTGGGTCGCGGGCGTGGCATGATCGCTC
CCCCACTTTTTTTTTTTTTCTCCCGTTTTTACATGTTTAGTGGGCGGCAG
TGTACACCGTTCCGTATATTTTGCGTTTGGCGCACTATATAACAGCCTGG
TTGCCGGAGGAGGGAGGGACTCTCCGTGTTTCTTCCTGCTGTGCTTGCTT
TGAACATGTCCGGCGAGAACGGGTTCAGCAATCCCTTCCCACCTTCTTGT
GTGCTTGCGCTTTTCGGATTTAAGCTGCGTTTTGTTTTCGCTCGAGGGAG
ATACGAATCCCAAAAGAACCCAGAGATTCTACGATTTTACCAACTGCGAC
TGTCGTGTGACGTGTGACCGAGCTCGTGCATTCCTTCAAGTTTCTGCGTA
CCATTGTTTTTCTTACTTACTTTTGAAGCTTGAGAGAGGTGTGGAATTTT
TCAAGGTGCGCCTGGACTTCAAAGATGTACCCTTTTCCCTACAGTATTCC
GCTGATTACTCCTTGTGTTGGCACCACCAGTCTCCTTCCCCAACCCCCCC
ACCGGCTATGTGGGATTATGTCTGTGCATCGAGGACGCCCCCCGTCCCTC
GCTAGCCACGCCACTGTTGTCCTAACTAAGCCTTTTCTCGTTCTCCACGA
CCCTCCTGAGATCCTCCCTACCCTTCCGTGGCTTGCGTTTCTTCTTCCAG
CTGTCGGCCTTCTACATGGAGTTGAGACGTCTCGCGCAGGACGACCCCGA
GGATTACGCCGGCTGGGAGGGCCTGGAGGAGGCCGTGTCCGACGGCCAAG
ACGGCGGCGGGGGCGGCGAGACCGATGCCGGTTCGGGGTCGGACAACAAC
GCCCCCAAGGAGCGCGGCAAGAAGCGAGGGTTGGCTACCTCGACCGGGGG
TGCGCGCGCCACGAAGAGGTGGGAGAGCGCGGTGTTTGCGTCACACCGTT
GACGCGCGTGTTTTTCGCGTTGATTACGTGCAGTTCGCGCGTTGATATCG
TGACCATTGTTTCCTCGGAAGGGAAAGGAGTGGGAGATGTGAACGGCGGC
ATTTTCATGGAAGGTTTTCGAATTTTGTGGCGCTCCACGCTGCTTGTTTT
TGTTTTGAGCACATTTCGCTGTTTCGTTTGGGGGGTCTTGGTTTTCTCGG
ACTTGACGACAAGCGTTCGTGGATTGAGTACACCGCTAGTGTGTTGGCAC
CACCCGCGCTCCTTCTCCAGGGCGCTCTTTCGCCTCCCTCCCCTCCAATC
AATCTCTCATGAACGAGCGGTAATGTGTGTTTTCCAAACCTGATTCTTAC
AACGAAACGCAACCTGTCGGTGGCACTGCTTGCGCGCGTGCGTGCAGGAG
AGCGAGCGCGGGGGACGCGCTTCCGACAGCCAAGAAACGAGGTGGCGTCG
GCGGCAGGGGGAAGGGGGCGAAGGCCAAGGGCAAGAAGGCGAAAACCGCA
AGACGGCGGAAGAGCACAGGGGGGTTGGCGGCGATTAGCGATAGCTCAGA
GAGAGACGACGACGACGACGAAGACGACGACGAGGACTGGGCGTAGGCCG
GGTGCGCGGTTGGGTGTGTTTCCCGTTGTAGTGTTGTATCTTTGGTCTCT
TGCGGATGGGGGTTGGGCCGTTGGAGGCTCACTCGGAGAACGCGCTTGAC
GTGTCGGCGGTTGGAGGTAGCTCACTGCTGCTGGCGCTCGAACTGTCCCT
TCCTGATTTGCGGGTGTTCACCCTATTCTTGGCGTTTGTTCACCCTATTC
TTGGTAGGGGCGGTCGGCGATGAGGTTGGGGTCGTGGCCTAGGACGCCTG
TTGTCAGCCCCTGTGGGAACTTCGACGCGCTTGCCTCCCGCAACAGCAAC
ATCTCATTTATTTTGCTGATTGGGCGTGCCGAGATTTCTGCGGGAGAGAC
TATGGATTTGTTTCCCTTTTTTTGGTGCGTAGGGCGAAGGATGAATGTCG
CAAGTTGAAAAAACAGAGCCGGAAAGCAGAAGAGAAAGGGACGAACTACT
GCCGGCGTGCCGCCCCCCCGAGTTGGCAAGAGTAGAGGTCGCAATTTTCC
ACGGGCGAAGTGGACTGCTGCCGCCCCCCTGAGATGGCAAGGGGTAGAGG
TCCCTGTTTTCCAAGAGCGATCTGGACTGGATACTGTAGGGAATAGCAAG
TTAGCATAATGTAAAAATCTGCAGGAATTTTACACCGACGTCAGAAAGAA
CGAGTGCCGAGCATAGACGTACGATCGAGGGGGGGATCACTCGGCTTTAC
GGTCGGCGGTCGACATTGAAATTAGTAGACCAAGCGTTTCGTTGACGGCG
GCGCGATCATTTGGAGGAAAGGTAGTAGTATATCGTGGGGCCTGCATCAG
TTGTGTGAGAGTTTTATTACATGCACCAAACGGTCGAGGGGAGCATGCAA
AACAAGGAGGCTGTAGAGCGGCGGGGGGGTGAAGGAATTGCGTCGCCGTT
CTGATACGTGCGGGTTGGCTCTACCTCACTGCAGATGTGGCGTCTGGGGT
TTCTGGCGTCAGGCCGGCTATCATCGCGAAACACACGTGCGGTGTGATGA
TATTCTTTTTATTGGTTAAAAATCGCTCTCTTCCTGAAGAAAGCGAGCCG
CTCTTTCGTTCTCACTAGGAGGACCGTCCGTCGGGCAGGGACTGGGTTGG
GCATTGTTTGTTTGTAGCTGGCGGTTTACAGGATAGAGGTGCTTTTTCGT
CGTCTCTTGGTGTGTTGTGTGTTGTGGGGCCGTTTGCAGGACACTCTCGC
CGCCTGAAAAGTATTAGGCAAGAACAGCGTAAGTGGATCGTTGGGTACTT
GCTAGAGTTCTCTGGCCAGTCGAGCGTGCACTGCAGTACATCGGCATCCG
CATGGCGTGGGTGCTCGCTACGGTTGCTGGCGCACGCGGTGTTCATATGC
GAGGCCGAACGATGCACCGTTTCGACTACCACGTGTGTGTGTCGCACGCA
AACTCGTACTGCTGTAGCACACACGAAACCTATATTTGTATTGTACCATG
TAGTTTCTGGAGCGTCCTGCCCTTGCCTCTTATCGCTTTGTACGCGAGCG
GTGTTGGATTGGACTATCGACAGAATAGTCAAGGGAGGGAAGGCTCTCTC
CGCGTGAGCCGTACGTGGAGAACCGTGTTTTGTAGTGATATGTCAATCGC
TGTGGAGGTATTTGTCTTGTTTAGTCTACGCCCTCAATATGCGACGTTTT
TGTCACGCCGCAGCGACTAGGCAGTGGAAAAAGCGTTGGGTCTTGCGGAG
AGCGAAGGATCAGCGGGTCACGCTCAAATTAGTGGCTGTCTCTCGCAAAT
ATCATGTACATCAAACAACGGCGTTGTTCAACCTGGGGTTTTGGATGGTG
ACGATGATCAGTCAATTTGCATTCATTACGTATACTTCGGCAGAGCGTGG
GGACTCGTTGGAGACGTTTCATGAAGGCACAGAAGGCACAGTGTTGCTGC
TCTCTCTGGTGTGTGCCACTGGCTGGCGTGGAAGATGACATCTCCTACAG
TTTTGCCTAGCTTGCTGCGATGTTGAACGGGTGCTGGCCGCGAAGGAAAG
GCTTGTAGATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8783:30..5641+

>mRNA_Ecto-sp13_S_contig8783.20256.1 ID=mRNA_Ecto-sp13_S_contig8783.20256.1|Name=mRNA_Ecto-sp13_S_contig8783.20256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8783:30..5641+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCTGCAGGGGAGCCAGTGCCTGGAGCTGCTGCACACTCTCCTGGC
GAGAAAGGGCGTGCCGACGCCCCCCCCAGATAGCGACGACATTGACGAAG
ACGATCTGGGCTTGCATGCGGCGAGAGAGCGTCAGGAAGGAGGGCACCGG
GTCAGCGGTGTCGCCGATCTCACCACCCCGGAGAACAACAGCGAAAACGG
TAATCCGCGGGCCCCCTCGCGCTCCGCTACGGCGCCCCCCGCCGTGGGCG
GCGGCGGGTCGTCATCGGCAGCGGGTATGGGAGCGGCCAATGCGGAAGAG
GAGAGCATGATGCATCTGAGGAAGACGTGCTCCGCAGCCGCGGCGTTTAG
CATGCTGCTTCGGCTCAAGGTTTACCTCAAGTCGGCTTACGGGCTGACGG
CCGCTAGGTGCCAGTCGTACAAGCCTAATGAGGCCACGAAGGCCAATGAG
AAGCAAGCGCAATCCCCGAATCCTCCCCCTGAGACGTTCAATCCCTTCAG
TACGGCCAAGAAGGGAGCAGGGAAGAACGTTGTGGACACCTCTTCCATAG
CAACTGCGGCCACGTCAGCCGCGGACATCCTGGACTCTGGGTCTCCGGTG
GATCTGTCGGCCTTCTACATGGAGTTGAGACGTCTCGCGCAGGACGACCC
CGAGGATTACGCCGGCTGGGAGGGCCTGGAGGAGGCCGTGTCCGACGGCC
AAGACGGCGGCGGGGGCGGCGAGACCGATGCCGGTTCGGGGTCGGACAAC
AACGCCCCCAAGGAGCGCGGCAAGAAGCGAGGGTTGGCTACCTCGACCGG
GGGTGCGCGCGCCACGAAGAGGAGAGCGAGCGCGGGGGACGCGCTTCCGA
CAGCCAAGAAACGAGGTGGCGTCGGCGGCAGGGGGAAGGGGGCGAAGGCC
AAGGGCAAGAAGGCGAAAACCGCAAGACGGCGGAAGAGCACAGGGGGGTT
GGCGGCGATTAGCGATAGCTCAGAGAGAGACGACGACGACGACGAAGACG
ACGACGAGGACTGGGCGTAG
back to top