mRNA_Ecto-sp13_S_contig878.20253.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig878.20253.1
Unique NamemRNA_Ecto-sp13_S_contig878.20253.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig878.20253.1 vs. uniprot
Match: D8LEJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ2_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 5.850e-112
Identity = 168/178 (94.38%), Postives = 171/178 (96.07%), Query Frame = 1 
Query:    1 MAHALRTGLLGVASRGTVRNFSAWLALALVALIAGVCDAFVAPSASLPLAGGSAVSKNDGHSRGCSTRPNGSGSGSLSMSADGSATKGEPAKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEKAQQFVDKDPYNTGGLVTKYQVLYFRKVL 534
            MAHALRTGLLGVASRGTVRNFSAWLALALVAL AGVCDAFVAPSASLPLAGGSAVSK DGHSRGCSTRPN SGSGSLSMSADGSATKGEPAKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEKAQQFVDKDPYNTGGLVTKYQ+  +  V+
Sbjct:    1 MAHALRTGLLGVASRGTVRNFSAWLALALVALTAGVCDAFVAPSASLPLAGGSAVSKIDGHSRGCSTRPNSSGSGSLSMSADGSATKGEPAKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEKAQQFVDKDPYNTGGLVTKYQIRDYMAVV 178
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BLAST of mRNA_Ecto-sp13_S_contig878.20253.1 vs. uniprot
Match: A0A835ZJU7_9STRA (YCII domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJU7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.180e-22
Identity = 39/81 (48.15%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:  271 AKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEKAQQFVDKDPYNTGGLVTKYQV 513
            ++L  + YTYV+GM++KRGP+R  HL +L  +T++G C+LGGAF+ P DGA+LLF +   A+ F  +DPY+  GL+TK+ +
Sbjct:    1 SQLYMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQTRAAAETFAAQDPYSKAGLITKFNI 81
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BLAST of mRNA_Ecto-sp13_S_contig878.20253.1 vs. uniprot
Match: A0A7S3JUF8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUF8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.410e-21
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:  268 PAKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSP----EKAQQFVDKDPYNTGGLVTKYQVLYFRKVL 534
            P K  A+ YTYVDGM++KR PYR  HLD LK M + G C+LGGAF +PCDGAV+LF S     E+ + F + DPY    LV  + V  +  V+
Sbjct:   51 PVKFYALRYTYVDGMLEKRQPYRQAHLDGLKKMADLGKCVLGGAFNDPCDGAVVLFDSSTTTKEEIEAFANVDPYVVNNLVPSWSVSEYMAVV 143
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BLAST of mRNA_Ecto-sp13_S_contig878.20253.1 vs. uniprot
Match: A0A6S9EHW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EHW5_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 2.260e-20
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:  268 PAKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEKAQQFVDKDPYNTGGLVTKYQV 513
            P KL AV YTYV+ M ++RG  R  HL+L+K     GTC++GGAF+EP DG  LLF + E A++FV +DPY   GLV  + +
Sbjct:   50 PKKLFAVRYTYVENMEERRGAVRAPHLELIKEYEAAGTCVMGGAFIEPVDGGFLLFETEEAAREFVSRDPYVEAGLVPHHDI 131
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BLAST of mRNA_Ecto-sp13_S_contig878.20253.1 vs. uniprot
Match: A0A3B9ZKB7_9BACT (YCII domain-containing protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=A0A3B9ZKB7_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 8.580e-17
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  292 YTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFS--SPEKAQQFVDKDPYNTGGLVTKYQVLYFRKVLDG 540
            Y  VD  +++R PYRT+HL L +   + G+  +GGA  +P DGAVL+F   +PE A+QF   DPY   GL+T +QV  +  V+ G
Sbjct:    7 YKTVDNYIERRAPYRTEHLGLAQQAVDNGSLFMGGALADPADGAVLIFKGDTPEVAEQFAKNDPYVKNGLITDWQVRPWMVVIGG 91
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BLAST of mRNA_Ecto-sp13_S_contig878.20253.1 vs. uniprot
Match: UPI001CCD5961 (YciI-like protein n=1 Tax=unclassified Psychroflexus TaxID=196864 RepID=UPI001CCD5961)

HSP 1 Score: 79.7 bits (195), Expect = 2.340e-16
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  292 YTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSS--PEKAQQFVDKDPYNTGGLVTKYQVLYFRKVLDG 540
            Y  VD  ++KR P+R +HL+LLK   E+GT ++ GAF EP DG V +F +  P  A+ F   DPY   GL+T++++  +  V+ G
Sbjct:    7 YKSVDNYIEKRAPFRQEHLELLKTANEQGTLVMAGAFSEPADGGVFIFKTNDPSVAENFAKNDPYVKNGLITEWKIRPWTVVIGG 91
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BLAST of mRNA_Ecto-sp13_S_contig878.20253.1 vs. uniprot
Match: A0A7S1UAB8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAB8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.080e-15
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:  265 EPAKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPE----KAQQFVDKDPYNTGGLVTKYQVLYFRKV 531
            +P K   + YTYV+ M+++RGPYR +HL   KA +E+G C + GA+ +PCDGAVLLF++ +      + F   DPY T GL  ++ V+++  V
Sbjct:   67 KPIKYIVLRYTYVENMLERRGPYRAEHLANAKAASEKGWCAIAGAY-DPCDGAVLLFNADKCSVADVENFAKADPYVTAGLA-QWNVVHYNAV 157
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BLAST of mRNA_Ecto-sp13_S_contig878.20253.1 vs. uniprot
Match: A0A7R9YBW9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBW9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.120e-15
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:  268 PAKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFS----SPEKAQQFVDKDPYNTGGLVTKYQVLYFRKV 531
            P    A+ Y+YV GM++KRGPYR  HL  ++ ++E+G   + GA+  PCDGAV LF     + E+ + FV  DPY   GLVT ++V+ +  V
Sbjct:   42 PQAFLALRYSYVPGMLEKRGPYREGHLKAIQVLSEQGKVAIAGAYT-PCDGAVFLFHPDQITEEEIEAFVRSDPYVENGLVTAWEVVNYTAV 132
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BLAST of mRNA_Ecto-sp13_S_contig878.20253.1 vs. uniprot
Match: A0A061S644_9CHLO (Ycii-related protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S644_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 1.140e-15
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:  253 ATKGEPAKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFS--SPEKAQQFVDKDPYNTGGLVTKYQVLYFRKVLD 537
            AT  +P     + Y YV+ +V+KRGPYR +HL       EEG  ++GG  ++P DGAV ++   +P + +QFV  DPY   GLV ++ +  F  V+ 
Sbjct:   29 ATSAQPPTYTLLTYEYVEDIVEKRGPYRQEHLAAAFKKQEEGKLVVGGPHIDPIDGAVFIWKDVTPAEIEQFVQDDPYVVNGLVPRWSIRQFLGVVS 125
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BLAST of mRNA_Ecto-sp13_S_contig878.20253.1 vs. uniprot
Match: UPI000833C2E6 (YciI-like protein n=1 Tax=Sulfurospirillum sp. UCH001 TaxID=1581011 RepID=UPI000833C2E6)

HSP 1 Score: 77.4 bits (189), Expect = 1.940e-15
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:  292 YTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEKAQ--QFVDKDPYNTGGLVTKYQVLYFRKVL 534
            Y YVD +++KR P+R  HL L  +  E G  LLGGAF  P DGA+L+F    KAQ   FV +DPY   GLVT + +  +  V+
Sbjct:    7 YNYVDNIIEKRVPFREAHLALATSFVESGELLLGGAFANPADGAILIFKVENKAQVEAFVKQDPYVQNGLVTSWNIREWSVVV 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig878.20253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ2_ECTSI5.850e-11294.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZJU7_9STRA4.180e-2248.15YCII domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3JUF8_9STRA9.410e-2149.46Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6S9EHW5_HETAK2.260e-2050.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3B9ZKB7_9BACT8.580e-1743.53YCII domain-containing protein n=1 Tax=Prolixibact... [more]
UPI001CCD59612.340e-1641.18YciI-like protein n=1 Tax=unclassified Psychroflex... [more]
A0A7S1UAB8_9STRA1.080e-1541.94Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9YBW9_9STRA1.120e-1542.39Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A061S644_9CHLO1.140e-1538.14Ycii-related protein n=1 Tax=Tetraselmis sp. GSL01... [more]
UPI000833C2E61.940e-1545.78YciI-like protein n=1 Tax=Sulfurospirillum sp. UCH... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig878contigEcto-sp13_S_contig878:18432..20493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score322.0
Seed ortholog evalue1.8e-85
Seed eggNOG ortholog2880.D8LEJ2
Model size546
Hectar predicted targeting categorychloroplast
Exons4
EggNOG free text desc.YCII-related domain
EggNOG OGs2DZF9@1,2S6ZJ@2759
Cds size546
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464150.4539032-CDS-Ecto-sp13_S_contig878:18431..184981681464150.4539032-CDS-Ecto-sp13_S_contig878:18431..18498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig878 18432..18498 +
1681464150.4648855-CDS-Ecto-sp13_S_contig878:19008..192031681464150.4648855-CDS-Ecto-sp13_S_contig878:19008..19203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig878 19009..19203 +
1681464150.4738333-CDS-Ecto-sp13_S_contig878:19765..198941681464150.4738333-CDS-Ecto-sp13_S_contig878:19765..19894Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig878 19766..19894 +
1681464150.4826865-CDS-Ecto-sp13_S_contig878:20338..204931681464150.4826865-CDS-Ecto-sp13_S_contig878:20338..20493Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig878 20339..20493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig878.20253.1prot_Ecto-sp13_S_contig878.20253.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig878 18432..20493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig878.20253.1

>prot_Ecto-sp13_S_contig878.20253.1 ID=prot_Ecto-sp13_S_contig878.20253.1|Name=mRNA_Ecto-sp13_S_contig878.20253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
MAHALRTGLLGVASRGTVRNFSAWLALALVALIAGVCDAFVAPSASLPLA
GGSAVSKNDGHSRGCSTRPNGSGSGSLSMSADGSATKGEPAKLAAVVYTY
VDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEK
AQQFVDKDPYNTGGLVTKYQVLYFRKVLDGG*
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mRNA from alignment at Ecto-sp13_S_contig878:18432..20493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig878.20253.1 ID=mRNA_Ecto-sp13_S_contig878.20253.1|Name=mRNA_Ecto-sp13_S_contig878.20253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2062bp|location=Sequence derived from alignment at Ecto-sp13_S_contig878:18432..20493+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACACGCGCTCCGTACAGGGTTGCTTGGAGTGGCAAGCCGAGGAAC
CGTGCGGAACTTCAGTGGTGAGGTCGATCTTGCATCCTGCATGAAGCTGC
AACGACAAAACATCATGTCGCCTCCTCTCTGGGCCGCCCCACACACCTCA
CCATGCGAGATTTTGTGACAAGAGGGGATGCACTATGTGGACGAGGAGGT
GTCCTCTGTTACTGTTTGTTTTGCCATTGGGTGGAAAACGAGTCAGGGTA
TAAAGTGCATCACGCCAATCCATGCAATAACCCGTCTTGTGTCAAGGTGT
CAGCGTACATGTAGAGACTGCTGAATACTTCGTGGTTTGGTGCGTGAAGT
CTCTGTCATAACTGCTGAATGTAGGACGGAGCATCTCGACACGTCGTCGA
TAGCCGATGCAGACAGCAACAACCCCTATGCTCAGCACGACAGCGATGTG
GCTCTTCGGCTTCACACCCACTTCTAAGTATTGCGACATGTCAACTGCCG
AGGCAACTCAACACGCAGCCTCGCGCCTTGGACTATGTTTTGACTTGTTG
CAAACGCCCACAACATTTAAACGACAGCGTGGCTTGCTCTGGCGTTGGTC
GCCCTGATCGCCGGCGTTTGCGATGCGTTCGTAGCCCCGTCCGCCTCGCT
GCCGCTGGCCGGCGGCTCCGCCGTATCGAAAAACGATGGGCACAGTCGCG
GTTGCAGCACCCGACCGAATGGCAGCGGCAGCGGCAGCCTTTCCATGAGC
GCGGACGGGAGCGCGACTAAAGGTAAGGAGGTGGTACGCGACTTAGATGT
CGAAGGAAATCCCCTTGGCCGAACCTGCAGGGTGCATCAAAAACAGAGTC
AAGGGTACATTCGCCAGTAGAGCCTGCTTGATGATAGTGCTGGGCATGTC
GGTTACTTGGTGGATATGTGACCATGGCGTGCTCTGGACACAACGAAGGA
CCGTCGCGCCGCTACAAGTTCTCGCGTCAATATACGTGCGGTTTCTGGGA
GCAGCTCTACACTCCTTGGTGAAGAAAGCTGTGATCCCCTGTGATCTCCA
GTTTTACCCATTAACACGAGTATTCCGTAGTGCCCACAGATGGTGGACAG
CCCTGATTGACCATGTTGTGTAGGGTGATGGTCGTGTATGACGTCATAGC
AACTGTGATCTCGTTCCTGCAGCGGCTGGATGTTTTCCACGTGCCGGCAT
GCAGCGGGCGGGGGCGAGATCCCTGTAAGGAATGCCACTAGCTGTTGCTA
CGTACCACCTAAACCAAGGATGCTTAACACCGAAGCCCATTGCTTTTGGC
CGGCGTCCACCCCTCCCGTTTAAATTAATGACAGGTGAACCGGCAAAACT
CGCCGCGGTTGTGTACACGTATGTGGACGGCATGGTCGACAAGCGTGGGC
CATACCGAACGGACCACCTTGACTTGCTCAAGGCCATGACGGAAGAGGGA
ACATGCCTGCTTGGTGAGCATGCACGTCGTATTGGACGCCTGCTGCTCCT
GCCGGTGGAGGCGGATGGCGGTTTGCGTGTCCCCCCCCCTGTAGACTGCT
GCCCCTATGTAACTAAGTGGAATGTAGTGAGCTCCTCACTAAACCGTCTT
CATGCCGATTTGTCTGACTTCACCAAGGGGGATTTTTGTGTGCATCTCCG
CGAGACTGGCAGGAAAATAGGTCAGTCTCTGAGCTAGGTGACGATCTGAT
GATTCGGTTGGTCCGTACTAAAAGAGCTATTGAGACATCCTTGCCGTGAA
TGAAAGAAAGCCCTGTACAAGGGAATACGTTTTGCCGTGTTTTTGCTAGA
CTGCGCTACATTCTGTGCCGATTAATGGCTCGTTAACAACCCTGGTGGTC
CTGTTCTTGGGGCCTTGGCTCAACCGTAGTAACGTCATTCGTGTTTCCCG
CACACAGGGGGGGCCTTCTTGGAGCCCTGTGACGGTGCCGTCCTCCTCTT
CTCCAGCCCCGAAAAGGCCCAACAGTTCGTCGACAAGGACCCGTACAACA
CCGGCGGGCTCGTCACGAAGTATCAGGTACTGTACTTCCGTAAGGTTCTT
GATGGGGGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig878:18432..20493+

>mRNA_Ecto-sp13_S_contig878.20253.1 ID=mRNA_Ecto-sp13_S_contig878.20253.1|Name=mRNA_Ecto-sp13_S_contig878.20253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig878:18432..20493+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACACGCGCTCCGTACAGGGTTGCTTGGAGTGGCAAGCCGAGGAAC
CGTGCGGAACTTCAGTGCGTGGCTTGCTCTGGCGTTGGTCGCCCTGATCG
CCGGCGTTTGCGATGCGTTCGTAGCCCCGTCCGCCTCGCTGCCGCTGGCC
GGCGGCTCCGCCGTATCGAAAAACGATGGGCACAGTCGCGGTTGCAGCAC
CCGACCGAATGGCAGCGGCAGCGGCAGCCTTTCCATGAGCGCGGACGGGA
GCGCGACTAAAGGTGAACCGGCAAAACTCGCCGCGGTTGTGTACACGTAT
GTGGACGGCATGGTCGACAAGCGTGGGCCATACCGAACGGACCACCTTGA
CTTGCTCAAGGCCATGACGGAAGAGGGAACATGCCTGCTTGGGGGGGCCT
TCTTGGAGCCCTGTGACGGTGCCGTCCTCCTCTTCTCCAGCCCCGAAAAG
GCCCAACAGTTCGTCGACAAGGACCCGTACAACACCGGCGGGCTCGTCAC
GAAGTATCAGGTACTGTACTTCCGTAAGGTTCTTGATGGGGGCTAG
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