mRNA_Ecto-sp13_S_contig8760.20233.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8760.20233.1
Unique NamemRNA_Ecto-sp13_S_contig8760.20233.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8760.20233.1 vs. uniprot
Match: D7G0C7_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C7_ECTSI)

HSP 1 Score: 585 bits (1508), Expect = 4.960e-198
Identity = 284/307 (92.51%), Postives = 294/307 (95.77%), Query Frame = 1
Query:    1 YKHQLLGDSQDTPMKERRFLYEEEVLVVNMDTQKEGNQRSKNGGRKLYFDEPDVGEPRWGERNSLNVEEVLLRERYRSGGWLGLHCESSLNMFLMVLLLWEEVFDERVHAALPHVITSRPLDMQDKFFCSRREGLSRRLRTISRSSDRQLWLDVGQRYDRFRGVVAIWCDWNRFPKQQVMEICAAFGGRRLSDLLSATTTTITQLRFGFPDVVLWRPKSDKGVTESRSGGGSGSGDEKGLDWGSKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARVPAMVTRVLTEKEASKMLL 921
            + H+  GDSQDTP+KERRF YEEEVLVVNM+TQKEGNQRSK+GGRKLYFD+PDVGEPRWGERNSLNVEEVLLRERYRSGGWLGLHCESSLNMFL VLLLWEEVFDERVHAALPHVI S PLDMQDKFFCSRREGLSRRLRTISRSSD QLWLDVGQRYDRF GVVAIWCDWNRFPKQQVMEICAAFGGRRLSDLLS TTTTITQLRFGFPDVVLWRPKSDKGV ESRSGGGSG+G+E+GLDW +KTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARVPAMVTRVL EKEASKMLL
Sbjct:  612 FLHKKFGDSQDTPLKERRFRYEEEVLVVNMETQKEGNQRSKSGGRKLYFDKPDVGEPRWGERNSLNVEEVLLRERYRSGGWLGLHCESSLNMFLTVLLLWEEVFDERVHAALPHVIMSSPLDMQDKFFCSRREGLSRRLRTISRSSDEQLWLDVGQRYDRFSGVVAIWCDWNRFPKQQVMEICAAFGGRRLSDLLSTTTTTITQLRFGFPDVVLWRPKSDKGVAESRSGGGSGTGEEEGLDWSAKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARVPAMVTRVLAEKEASKMLL 918          
BLAST of mRNA_Ecto-sp13_S_contig8760.20233.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 461 bits (1186), Expect = 9.550e-149
Identity = 242/302 (80.13%), Postives = 254/302 (84.11%), Query Frame = 1
Query:   19 GDSQDTPMKERRFLYEEEVLVVNMDTQKEGNQRSKNGGRKLYFDEPDVGEPRWGERNSLNVEEVLLRERYRSGGWLGLHCESSLNMFLMVLLLWEEVFDERVHAALPHVITSRPLDM--QDKFFCSRREGLSRRLRTISRSSDRQLWLDVGQRYDRFRGVVAIWCDWNRFPKQQVMEICAAFGGRRLSDLLSATTTTITQLRFGFPDVVLWRPKSDKGVTESRSGGGSGSGDEKGLDWGSKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARVPAMVTRVLTEKEASKML 918
            GD+QDTP+KERRF YEEEVLVVNMDTQKEGNQRSKNGGRKLYFD+PDVGEPRWGERNSLNVEEVLLRERYRSGGWLGLHCESSLNMFLMVLLLWEEVFD+RVHAALPHVIT+R +    +DKFFCSRREGLS RLRTISRSSD QLWLDVGQRYDRF             PKQQV   C       L +  ++      + RFGFPDVVLWRPKSDKG  ESRSGGGSGSGDEKGL WGSKTHFGLGWEGYGQGWEV  VEVKSKDD TSHAQKAWLMELENARVPA+VTRVL EKEASKML
Sbjct:  734 GDNQDTPLKERRFRYEEEVLVVNMDTQKEGNQRSKNGGRKLYFDKPDVGEPRWGERNSLNVEEVLLRERYRSGGWLGLHCESSLNMFLMVLLLWEEVFDDRVHAALPHVITARNMKHAGKDKFFCSRREGLSIRLRTISRSSDEQLWLDVGQRYDRF-------------PKQQVW--CDRAWRYYLDNDRASK-----RRRFGFPDVVLWRPKSDKGAAESRSGGGSGSGDEKGLHWGSKTHFGLGWEGYGQGWEV--VEVKSKDDTTSHAQKAWLMELENARVPAIVTRVLAEKEASKML 1013          
BLAST of mRNA_Ecto-sp13_S_contig8760.20233.1 vs. uniprot
Match: D7G0C5_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C5_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 1.230e-98
Identity = 177/308 (57.47%), Postives = 221/308 (71.75%), Query Frame = 1
Query:    7 HQLLGDSQDTPMK--ERRFLYEEEVLVVN--MDTQKEGNQRS--KNGGRKLYF-DEPDVGEPRWGERNSLNVEEVLLRERYRSGGWLGLHCESSLNMFLMVLLLWEEVFDERVHAALPHVITSRPLDMQDKFFCSRREGLSRRLRTISRSSDRQLWLDVGQRYDRFRGVVAIWCDWNRFPKQQVMEICAAFGGRRLSDLLSATTTTITQLRFGFPDVVLWRPK-SDKGVTESRSGGGSGSGDEKGLDWGSKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARVPAMVTRVLTEKEA 906
            H+  GD Q   ++  +R  L++ +V  ++  ++TQK+G+Q +  + GGRKLY+ ++   GE RW E  S NVEEV++RERY +GGWLGLH ES L MF+++LLLWEEVFD  V AA+PH I   PLD  DKFF +RREGL  RL TI + +DRQL+ DVGQRYDR RGV + WCDWN FPKQQ+MEIC AFGG+RLSDLL   T  +  +  GFPDVVL RPK +D G   S SGGG    DE+  DW ++THFGLGW+G+G GWEV+VVEVKSK D  S  QKAWL ELE+  VPAMV+RV+ E EA
Sbjct:  694 HKKCGDRQTASLRGRQRSPLWDPKVEDIHPPVETQKQGSQGTLGEKGGRKLYYYNDAAPGERRWSEARSHNVEEVVIRERYSAGGWLGLHGESKLIMFILMLLLWEEVFDSGVEAAVPHCIMISPLDTSDKFFTTRREGLPDRLATIGQYADRQLFSDVGQRYDRLRGVRSGWCDWNVFPKQQIMEICVAFGGKRLSDLLKTLTNNLADMDKGFPDVVLRRPKGADFGAGGSSSGGGR---DER--DWKARTHFGLGWQGHGHGWEVEVVEVKSKGDTISKEQKAWLAELEDIGVPAMVSRVVAENEA 996          
BLAST of mRNA_Ecto-sp13_S_contig8760.20233.1 vs. uniprot
Match: A0A6H5KHC9_9PHAE (VRR-NUC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHC9_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.610e-30
Identity = 88/202 (43.56%), Postives = 105/202 (51.98%), Query Frame = 1
Query:  301 EEVFDERVHAALPHVITSRPLDMQDKFFCSRREGLSRRLRTISRSSDRQLWLDVGQRYDRFRGVVAIWCDWNRFPKQQVMEICAAFGGRRLSDLLSATTTTITQLRFGFPDVVLWRPKSDKGVTESRSGGGSGSGDEKGLDWGSKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARVPAMVTRVLTEKEA 906
            EEVFD  V AA+PH I   PLDM DKFF +RREGL  RL  I + +DRQL+ DVGQRYDR+                       AFG   L          + ++   F            G  +   G G         DW + THFGLGW+G+GQ WEV+VVEVKSK D     QKAWL ELE+  VPAMV+RV+ E EA
Sbjct:  627 EEVFDSGVEAAVPHCILISPLDMSDKFFTTRREGLPGRLAMIRQYADRQLFSDVGQRYDRW-----------------------AFGDHSL---------IVAKIPHAF--------YCCGGTAQIELGDG--------RDWNATTHFGLGWQGHGQVWEVEVVEVKSKGDTIRKEQKAWLAELEDIGVPAMVSRVVAENEA 780          
BLAST of mRNA_Ecto-sp13_S_contig8760.20233.1 vs. uniprot
Match: A0A1Y2EX06_9BASI (Fanconi-associated nuclease n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2EX06_9BASI)

HSP 1 Score: 84.0 bits (206), Expect = 2.780e-13
Identity = 82/306 (26.80%), Postives = 117/306 (38.24%), Query Frame = 1
Query:   10 QLLGDSQDTPMKERRFLYEEEVLVVNMDTQKEGNQRSKNGGRKLYFDEPDVGEP---RWGERNSLNVEEVLLRERYRSGGWLGLHCESSLNMFLMVLLLWEEVFDERVHAALPHVITSRPLDMQ-DKFFCSRREGLSRRLRTISRSSDRQLWLDVGQRYDRFRGVVAIWCDWNRFPKQQVMEICAAFGGRRLSDLLSATTTTITQLRFGFPDVVLWRPKSDKGVTESRSGGGSGSGDEKGLDWGSKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARVPAMVTRVLTEKEASKM 915
            Q +  S D P  ERR     + L+   +       R   G R    DEP +G+    R  +     VEE+ L E+Y   GW G H E+ +   +  L  W+ VF   V+        S PLD+  D F   RR  ++ RL  I R  +   +L+     +R RG  A+  +W +F KQ ++EI    GG  L+ +L+           G PD+ LW P                                            +  EVK   D  S  QK W+  L  A V   V RV+T +E  +M
Sbjct:  558 QRIESSLDVPKAERRVF---DALLAKSE------HRIMEGER---LDEPTIGKKSVWRASDGAECGVEELAL-EQYEREGWKGFHSENGILTTIFTLTFWDIVFAP-VNGVFETKYQSAPLDLSTDAFAIVRRPLINDRLAAIRRG-EAASFLEKNDDRERPRGTWAVGVNWEKFAKQDLLEIVQCIGGEALATILTMFCEEYGHRTGGIPDLCLWNPALSL---------------------------------------CKFSEVKGPGDHLSETQKVWIDVLLGAGVEVEVCRVVTSEEKDEM 809          
BLAST of mRNA_Ecto-sp13_S_contig8760.20233.1 vs. uniprot
Match: A0A7S2R784_9STRA (Fanconi-associated nuclease n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R784_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.630e-13
Identity = 65/268 (24.25%), Postives = 108/268 (40.30%), Query Frame = 1
Query:  115 RSKNGGRKLYFDEPDVGEPRWGERNSLNVEEVLLRERYRSGGWLGLHCESSLNMFLMVLLLWEEVFDERVHAALPHVITSRPLDM---QDKFFCSRREGLSRRLRTISRSSDRQLWLDVGQRYDRFRGVVAIWCDWNRFPKQQVMEICAAFGGRRLSDLLSATTTTITQLRFGFPDVVLWRPKSDKGVTESRSGGGSGSGDEKGLDWGSKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARVPAMVTRVLTEKEAS 909
            R KN  +    D   +G+    ++   +VE  +L      GGW GLHCE S+   L  L  W+ +F E +         + PLD+      F+ SR+  +   L  IS  +  Q+   + Q +D   G+ A    W+RF    +  +    G + LS +             G PD++L+R                       +++     F   WE     ++V+ VEVKSKDD     Q+ WL  L +    A + +V  + +++
Sbjct:  532 RRKNRAKSKKCDFLSMGDSN--DKLYCSVEGYVLEHYETLGGWSGLHCEGSMFRTLFTLFFWDVIFREDIPNVFHSPYQAAPLDLYFCNGLFYESRKNQIDSLLEEISNMTRHQIAATLRQNWDLHNGIRAAGISWDRFNLDTIQCVGVCMGPKVLSKVFERLCQDYAHWGGGVPDLLLYRISHPNSSVI--------------IEYPENMEFKDTWE-----YDVEFVEVKSKDDSLFEKQRCWLDFLLSIGAKARICKVTNKVDSA 778          
BLAST of mRNA_Ecto-sp13_S_contig8760.20233.1 vs. uniprot
Match: A0A8J8T904_HALGN (Fanconi-associated nuclease n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8T904_HALGN)

HSP 1 Score: 73.2 bits (178), Expect = 4.420e-11
Identity = 59/236 (25.00%), Postives = 102/236 (43.22%), Query Frame = 1
Query:  181 ERNSLNVEEVLLRERYRSGGWLGLHCESSLNMFLMVLLLWEEVFDERVHAALPHVITSR----PLDMQDK-FFCSRREGLSRRLRTISRSSDRQLWLDVGQRYDRFRGVVAIWCDWN--RFPKQQVMEICAAFGGRRLSDLLSATTTTITQLRFGFPDVVLWRPKSDKGVTESRSGGGSGSGDEKGLDWGSKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARV 867
            ++   NVE + L    +   W GLH E++L   L  +++W+E++ +RV    PHV  S     PLD  +  F+  R++ + R+L+ +   S++Q+     + Y++ +G   I  +W+  +    ++  I    GG+ L+   S          +G PD+VLWR   DK +                                     ++ VEVKS+ D  S  QK WL+ + N  V
Sbjct:   10 QQQFFNVENLALTYYGKKLRWNGLHVENNLVKHLYGIMMWDEIYYDRV----PHVFQSSFQFGPLDFYEPDFYLHRKDIIDRKLQRLRLMSNQQIKDYFMKEYEKNKGFHNILVNWDNLKLTPFRMAAIAYCMGGKLLAMFFSKLAEDFKNWSYGMPDLVLWR--EDKKM-------------------------------------IKFVEVKSETDNLSEKQKCWLVNITNEGV 202          
BLAST of mRNA_Ecto-sp13_S_contig8760.20233.1 vs. uniprot
Match: A0A078AUB4_STYLE (Fanconi-associated nuclease n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AUB4_STYLE)

HSP 1 Score: 75.9 bits (185), Expect = 5.420e-11
Identity = 64/247 (25.91%), Postives = 101/247 (40.89%), Query Frame = 1
Query:  196 NVEEVLLRERYRSGGWLGLHCESSLNMFLMVLLLWEEVFDERVHAALPHVITSRPLDMQDK-FFCSRREGLSRRLRTISRSSDRQLWLDVGQRYDRFRGVVAIWCDWN--RFPKQQVMEICAAFGGRRLSDLLSATTTTITQLRFGFPDVVLWRPKSDKGVTESRSGGGSGSGDEKGLDWGSKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARVPAMVTRV----LTEKEASKM 915
            +VE + LR         G+HCE++L      LL+W E+F +++         + PLD   K F+  R+E + +RL  IS  +  QL  ++  +YD  R        W+  R  K++++EI    GG RLS ++            G PD++LW   SD G                                      V+  EVKS+ D  S  Q+AW+  L  + +   V  V     ++ EA K+
Sbjct:  235 DVENLALRFYSLHQNLNGMHCENALGQTFFGLLMWNEIFYDKIPYVFQTPYQATPLDFGTKDFYLQRQEIIDQRLEKISLMNQSQLGQELELQYDSNRNKFNALVGWDSLRLNKRRLIEIGQVIGGLRLSRIVKNYCVDYKYWNHGMPDLILW--DSDTG-------------------------------------RVKFSEVKSETDRLSEVQRAWIAYLSQSEIDVEVCYVNRQPQSQDEAEKL 442          
BLAST of mRNA_Ecto-sp13_S_contig8760.20233.1 vs. uniprot
Match: J9FL16_9SPIT (Fanconi-associated nuclease n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9FL16_9SPIT)

HSP 1 Score: 71.2 bits (173), Expect = 3.130e-9
Identity = 55/219 (25.11%), Postives = 90/219 (41.10%), Query Frame = 1
Query:  196 NVEEVLLRERYRSGGWLGLHCESSLNMFLMVLLLWEEVFDERVHAALPHVITSRPLDMQDK-FFCSRREGLSRRLRTISRSSDRQLWLDVGQRYDRFRGVVAIWCDWN--RFPKQQVMEICAAFGGRRLSDLLSATTTTITQLRFGFPDVVLWRPKSDKGVTESRSGGGSGSGDEKGLDWGSKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWL 843
            +VE + LR         G+H E+ L      +L+W E+F +++         + PLD   K F+  R+E +  RL  IS  +  QL  D+ + Y+  +     + +W+  R  K++++EI    GG RLS +LS           G PD++LW  K+ +                                       V+  EVKS+ D  S  Q+AW+
Sbjct:  901 DVENLALRFYSLHQNLNGMHSENGLGTSYFGILMWNEIFYDKIPYVFQTPYQAAPLDFGTKDFYQQRQEIIDDRLMKISEMNKLQLTEDISKLYEANKNKFNQFINWDSLRLNKRRLIEIAQVIGGLRLSRILSNYCKDYKHWNHGMPDLILWDAKTGR---------------------------------------VKFSEVKSETDRLSEVQRAWI 1080          
BLAST of mRNA_Ecto-sp13_S_contig8760.20233.1 vs. uniprot
Match: A0A6A6GF01_9PEZI (Fanconi-associated nuclease n=2 Tax=Elsinoe TaxID=40996 RepID=A0A6A6GF01_9PEZI)

HSP 1 Score: 63.5 bits (153), Expect = 7.250e-7
Identity = 70/268 (26.12%), Postives = 110/268 (41.04%), Query Frame = 1
Query:  118 SKNGGRKLYFDEPDVGEPRWGERNSLNVEEVLLRERYRSGGWLGLHCESSLNMFLMVLLLWEEVFDERVHAALPHVITSR----PLDMQ-DKFFCSRREGLSRRLRTISRSSDRQLWLDVGQRYD--RFRGVVAIWCDWNRFPKQQVMEICAAFGGRRLSDLLSATTTTITQLRFGFPDVVLWRPKSDKGVTESRSGGGSGSGDEKGLDWGSKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARVPAMVTRVLTEK 900
            ++ G + L+ D P +        + ++VE++ L   YRS GW G  CESSL     V  L+  +  + + A +P+V  +     PLD+  D F+ +R   +  RLR ++     ++   VG+ Y+  R R    +  DW  F + +V  I   +    L+ +L            G PD+ LWR                    E  LD G K              EV   EVKS++D  S  Q+ W+  L  A V   +T  L  +
Sbjct:  643 NRKGAKTLWLD-PALPPSVATSSSPVSVEQMCL-SHYRSQGWRGYPCESSL-----VRTLFGAIMSDVMFAYVPNVFQTEFQTCPLDLHTDGFYATRIGEVEGRLREVANGRAGEV---VGRWYEANRERRTCVVGVDWG-FDEGEVRRIVRCWAPEALATVLKVLAQEYGSRGGGVPDLFLWR--------------------EALLDRGQKG-------------EVMFAEVKSENDRLSDTQRMWIDVLTGAGVRVELTHALASE 866          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8760.20233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G0C7_ECTSI4.960e-19892.51Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
A0A6H5KFJ9_9PHAE9.550e-14980.13Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
D7G0C5_ECTSI1.230e-9857.47Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
A0A6H5KHC9_9PHAE1.610e-3043.56VRR-NUC domain-containing protein n=1 Tax=Ectocarp... [more]
A0A1Y2EX06_9BASI2.780e-1326.80Fanconi-associated nuclease n=1 Tax=Leucosporidium... [more]
A0A7S2R784_9STRA4.630e-1324.25Fanconi-associated nuclease n=1 Tax=labyrinthulid ... [more]
A0A8J8T904_HALGN4.420e-1125.00Fanconi-associated nuclease n=1 Tax=Halteria grand... [more]
A0A078AUB4_STYLE5.420e-1125.91Fanconi-associated nuclease n=1 Tax=Stylonychia le... [more]
J9FL16_9SPIT3.130e-925.11Fanconi-associated nuclease n=1 Tax=Oxytricha trif... [more]
A0A6A6GF01_9PEZI7.250e-726.12Fanconi-associated nuclease n=2 Tax=Elsinoe TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8760contigEcto-sp13_S_contig8760:893..6159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score567.8
Seed ortholog evalue3e-159
Seed eggNOG ortholog2880.D7G0C7
Model size1581
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.phosphodiesterase I activity
EggNOG OGsKOG2143@1,KOG2143@2759
Cds size885
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8760.20233.1prot_Ecto-sp13_S_contig8760.20233.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8760 1550..6120 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464148.7377846-UTR-Ecto-sp13_S_contig8760:892..15491681464148.7377846-UTR-Ecto-sp13_S_contig8760:892..1549Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8760 893..1549 -
1681464148.8358586-UTR-Ecto-sp13_S_contig8760:6120..61591681464148.8358586-UTR-Ecto-sp13_S_contig8760:6120..6159Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8760 6121..6159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464148.749984-CDS-Ecto-sp13_S_contig8760:1549..16931681464148.749984-CDS-Ecto-sp13_S_contig8760:1549..1693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8760 1550..1693 -
1681464148.7606425-CDS-Ecto-sp13_S_contig8760:2014..21801681464148.7606425-CDS-Ecto-sp13_S_contig8760:2014..2180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8760 2015..2180 -
1681464148.7711625-CDS-Ecto-sp13_S_contig8760:2815..28951681464148.7711625-CDS-Ecto-sp13_S_contig8760:2815..2895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8760 2816..2895 -
1681464148.781841-CDS-Ecto-sp13_S_contig8760:3167..32221681464148.781841-CDS-Ecto-sp13_S_contig8760:3167..3222Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8760 3168..3222 -
1681464148.792557-CDS-Ecto-sp13_S_contig8760:4108..42361681464148.792557-CDS-Ecto-sp13_S_contig8760:4108..4236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8760 4109..4236 -
1681464148.8033996-CDS-Ecto-sp13_S_contig8760:4922..50491681464148.8033996-CDS-Ecto-sp13_S_contig8760:4922..5049Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8760 4923..5049 -
1681464148.8148258-CDS-Ecto-sp13_S_contig8760:5427..54941681464148.8148258-CDS-Ecto-sp13_S_contig8760:5427..5494Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8760 5428..5494 -
1681464148.82565-CDS-Ecto-sp13_S_contig8760:6002..61201681464148.82565-CDS-Ecto-sp13_S_contig8760:6002..6120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8760 6003..6120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8760.20233.1

>prot_Ecto-sp13_S_contig8760.20233.1 ID=prot_Ecto-sp13_S_contig8760.20233.1|Name=mRNA_Ecto-sp13_S_contig8760.20233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp
MKERRFLYEEEVLVVNMDTQKEGNQRSKNGGRKLYFDEPDVGEPRWGERN
SLNVEEVLLRERYRSGGWLGLHCESSLNMFLMVLLLWEEVFDERVHAALP
HVITSRPLDMQDKFFCSRREGLSRRLRTISRSSDRQLWLDVGQRYDRFRG
VVAIWCDWNRFPKQQVMEICAAFGGRRLSDLLSATTTTITQLRFGFPDVV
LWRPKSDKGVTESRSGGGSGSGDEKGLDWGSKTHFGLGWEGYGQGWEVQV
VEVKSKDDITSHAQKAWLMELENARVPAMVTRVLTEKEASKMLL*
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mRNA from alignment at Ecto-sp13_S_contig8760:893..6159-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8760.20233.1 ID=mRNA_Ecto-sp13_S_contig8760.20233.1|Name=mRNA_Ecto-sp13_S_contig8760.20233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8760:893..6159- (Ectocarpus species13 EcNAP12_S_4_19m)
TACAAACATCAACTCTTAGGCGACAGTCAAGATACGCCCATGAAAGAACG GCGCTTCCTCTACGAAGAGGAGGTCTTGGTCGTGAACATGGACACTCAAA AGGAGGGGAATCAGAGGTCGAAGAACGGGGGGCGAAAGCTGTACTTTGAC GAACCTGGTGAGGACACGCAGTCCAGATAGTGAACTAAAGTCTGCTTTGA CTGTTGTTACTGATTGTTTTGTTGGCGGTGCTGCCTTTGCTTAGTATTAC TACAATAGTGAGTATTTCAGTCCACGTGAGGTTTGTATTGGACAAGCTAA CATGCCTCCACGATCCCCCTCTCTAATTGGCTATTGAATGACCCCAATCT GGCGTCTCCCCGAGTAGTGTCGAAGTAGCACGCCCCGTGCGATGTGAATG GGATCACGGTATCAAACCCTTTACGGAACCACCCCTGAGTTCAGCCTAGT CGCCACAATGAAACCCGCCTAGACGAATGAGCGGTCGGAGTGTGAGCTAT CAGTGCTAGGTAGACATCTCCCGGACAGTCTCGAAAAGCCCGACCTTTAT GCACCTAATCGCGTGCTGACCAGCCACGTGGTTGCAGAGCCATTGATGCG TACCCTCTTGTGTGATACTATAGCTACACGTACTGCTCGTTCGTCTTCTT GTCATGTCTCCGAAGATGTCGGCGAACCACGCTGGGGCGAACGAAATTCA CTGAACGTAGAAGAAGTGCTATTGAGAGAAAGGTAAGCAGGTTGAGAACG CTTCTTTTGGGGGGCAGCACCGTGGATTTTATATGCACAAACACTAACCC CCGCCCATTTCCCCAGAACAATTTTCTCTGACTGAGCAGAAAAGGCGTCC TTTTTTGCCATCGAACGCAGGCCGCGCTCGAACAGCTGAGTAGGGCTGCA TCAGGATTCGTGTTGAGTGAATGTTGTAATATGTTCGTGCTCTGGGCAGC AAGCTCAATCGCAACCCCAAGTCGTAGAGCGCTCGGAAGGGAGACACTAT CGCGGGCACGTCACGTGGCCAAGTGTCGAAGACGCATGTCTTTCACTACA ATATCTCCCTGAACATCGTGCACACGATTGTATGACGGAATTCCCTGAAC GAAACCGCAGATATCGCTCGGGCGGATGGCTGGGGCTGCACTGCGAGTCC TCCCTCAACATGTTTCTGATGGTACTCTTGCTGTGGGAGGAGGTTTTCGA CGAGCGAGTGCATGCGGCACTTCCGCACGTAATCACGGTGAGAAAAACGT GTTTTCGCAGAGGACGAAGAACGCCCTTCTGGTCTGTTTTGATCTGCTTC AGGCCGTAACTAGAGCGTTGCACCATACCCATTTTGTCTCGTTTTCCACT CTGGATCATGTGCGCGACAGTGAGAGAGTACGCACGATGTCCACATGTTG GGTTTTCGACATCAGAGAGAGAGAAAGAGGGAGAGCTACCAATGCAAATG GTAAATGTTCACCAAATTTTATATCTACCATGGTCAGCCACACGTGACAT GCCACACGTGGTTCCAGCACATTTTCTGTGGGATACCCCCGACGTAAGGC AAAACGTAGTACCACAGGCGAGGAATATGAATCATGTATGAAAGGTTAGA GATTAGCGCCCTCGGGAAGGGATTAACAGAATCGGTAGGGTGTGTGTTAG GGACCTTTACGACGTCTTGTTCAGAAGTGAAACGATGGACACAAACAGGG AAATCATGGCGGTTACGCGTTGAGAAGAGTGAAAGGAGCCGTGGAGAGAT CGGGATTCCGTGCGTAATTGTTTCGGTCAGACGTGATCAGCATCCCCGAG TGATTGCCGTATCGGCAGCAGGAAGAGTTAAGCCGTCCAGAGACGTTGCA TGGTCAACGCCAAGCAACTGTTGGCGCCCATCGAACGGATGCCCCCCCCC CATCCTTCCCGGTTTTCGATCAGAGCCGGCCTTTAGACATGCAGGACAAG TTTTTCTGCAGCCGGAGAGAAGGCCTGTCGAGACGTTTGCGGACAATTTC ACGATCTTCTGATCGGCAGCTGTGGTTGGACGTTGGGCAGCGCTACGACA GGTTGGTGACTGTTCAAGAATGTCTGCCGTTCTATCAGCGAAGTAGTCCT TGCTCTGTCTGGGTCCAACTGCATCTGACAAGGAGAACTGAATCACGACG ACCTGGGCACTAGGGTAGCGTAAACCCTGTTTCGCTCGTTTGCATTCGAC CGTTGCTATCCACTTTTGCTTTTGGGCGTACTGGCTGCTTGGCCAGATCC CCCACGGGCACCGCGTTGATTCTTGTGACGGTGCCTAATCCGTTTCCACT CTGATTTTGCGTTTCGGCCCTTGATTTTCGGCGGTTTGAATTTGTTGCGT CGTGCTGCAGAGCATGTGGAAAGCTTTCGCTGTGTCACACCGTGGAAATC GACCACCTCTTGCAATCTTGGGCGTGTAAATGGGGGTCTTGCACAGACGG CAGACAGTGTTTCAACTGTCATAGTAGAAAGTTACAGTGATTTCTGATCA TCAGCAGAGCAGCAGCAGCAGAGCAGGAAGCAAGAACAAAGACGTGCTAC ACAGGGTGTACATATTTTTGCCATCCCGTGGTAGAGATGATATGTATGGC ATACATGAGCAAGGCCATCCAGTCGTTGGCTCTACACGAGTGTTGAAAGC TGTTGGCGGTCTGCCCCACCAACACTCCTGAGGGCGACACAACGTCTGCA TGTTAGGTACTCCGGTGCGTAGATTTTGACGGAAAAGGCGGGAGAATGAT AAGAGTGAAGCGAGATTTCTAATCTTCCCTGAGGTCTCACCGCAATATAG ACCCGATGCAGAAAAAGTTTTGTGCGTATGTCCGTTTGCTTAAACAAGGT TTTAGAGGACAACGATATCACAGGGATATCTGTCGAGCACCCCCCCCCAC CCCCCCCTCCCCTTCCCCCTGCCCCCGATCCCGCCAGGTTCAGGGGAGTA GTAGCCATTTGGTGCGACTGGAACAGGTTTCCTAAACAGCAGGTGTGTTG CATGCGTTTGCGCTGAAAGACGATATCACCTTCAGAAATCGTGCATTCGT TCGTGCCTTTTTTGTATTTGTATTGAAACGCTTCGGTCGTTTGGTCCAGA TACGTCGTCATTTTCTTCGTGTAGACGTGCCTTCGGTTGGGCCAAAATGA GGAATGAGCCGTGATTTGTGATTTGTCTTCCAAGAAGTGTTCGGGGTTAA GGAGGCGATGCCGCCCACTCGATGCCGCCTACCTGCCTTTCCTTATTTCG ACGCATCGCACCAGGTGATGGAGATCTGCGCCGCTTTCGGCGGACGGCGA CTGTCTGATCTCCTCAGTGCGACAACCACCACCATAACACAGCTGTGAGT CTTTCGGGTGACAACAAGACCCCTCCCTCGAACACAGAACGAAGATCTAA TCGTTGCCAACCGAACTTGACTGCATCCTTTCGAGGCTGGTGAAACGTTG CACGTGCTCTGTGTCAATAGAATCGGGCGTGGCGATGCTATCTCGACAAC GGCCGCGAGAGCAAACGGAGGTAATTCGTTAGGTTCCGCCAACGAAAAGG AATCCATTGGCGGAGGAGTAGGGATGAACCAATAGAAGTATTGGGTAGTT TCTCGAGACTGGGCGTGCGGGTGGTTGGCATGTCTGTAGATGTCCGTTGG TTGCGGTCACGATAACGTTTCCGGACATCAGTGCAATGAAAGTCATTCTA TATCCCCACCGTTGTTCCCGTCCCTGACGCCTGTTGCTCCGTCTTGGCAC ATCTCTATCATTGGGCATACCTCACCCTCGATCGTGTCGTTGCGCTAGAG CAAAGCCTAGTACCATCCCTCACACTCCTCTGCCCCCCACCCAAAGATGA CGGTCGAACGTCCTTCAGGTGTTCGGATGCGGCGCTGTGAAGCCTTAAAT TCTCCTCCTCCCCCCACCCCCCCCCCCGGCGGTTCGCTATGCGTTTGTGT ACTTCTTCTTTGTTTTGTCGTACATGTAGACGCTTCGGATTCCCGGACGT GGTCCTCTGGAGGCCCAAGAGTGACAAGGGCGTTACCGAGAGCAGATCTG GTGGTGGCAGTGGTAGCGGCGATGAGAAGGGACTCGACTGGGGCTCCAAG ACACACTTCGGCCTGGGGTGGGAGGGCTACGGTCAAGGGTGGGAGGTGAG GTTGATAGCGTCGATACTTTGGAAGTTTCAGCAAGCTGCTTTGAACCAGT GTATCTGCCCGCTTTCGTTCTAGGGATGGGACGAAGCGCCGAAGGAGAGA GGATAAACACTCTTGAAGGTACCAGGTATCCCTTGCGTATTATCCCACGC AGCCCTGCAACCCCTTTGAGCATGCCGGTTCGGTACAAACAAAAGGCGAC AAAGCAGGGTAGAAAGTGAAAAACGGAGCGGCCATGAACAACGACCCCGG CGACGGAACAAGGCGAACCTGACAACATCAGCACCATTGATCCTGTTGGG TAATTTGAATTGCCAGGTGCAGGTGGTCGAAGTGAAGTCCAAGGACGACA TCACGAGCCACGCGCAGAAGGCCTGGCTAATGGAGCTAGAGAACGCTCGC GTGCCGGCCATGGTTACTCGGGTGCTGACCGAGAAGGAGGCCTCGAAAAT GTTGTTATAATATCTTGATCGTTGAGGACGGCACAGTGTATCCTCAGGGG GTGGTTCGGGGTGGGTGTTGCTTAATTTTCTTGCATAGCAGAGACGTTGA CTCTAGATCCTTGCCGTGGACGAAATGTGAACGGGGTGAAGTTACGCCGC CGGCAGTGCAACTTTCATAGACCCGGTCTCGGTAGTCGGATTGAACCCAA GATAATGGTCGTGCCCCGTTATCAGAGCGGTCAAGTTTCGTGGACCATTT TTTGTATTCGTATGGTATTTGTCGTCTTGAGAAAGTGTATCGAAGGTGTT GCATCCTTGGCAGACATTCCTGCGTAGTTGTACCCGAGATGCTGCTGCGG AACGCCTCGCGGGTTGCGCGGTGGGGCTTTCTCGGTGGGGTTTGAAGTGC GGACGACACTGGCGGGCCTGCAGGCCGTGGTAGGTCTCCCTCATGTTTCG GCTCAACGAGGGGAATACCGCGGGATCGTGTTTGAGTCGACCGTCGCACA TCATGCCAGGACGTTTGCGCTGTCTTTGTCCAGTAGTTGAGAAAGGACTC AGCACGTTTATTGAGGATGTACAGGGTGGGTGCACAAAGTGGGGCATGGA TTTATCGAGTAGAAGAAGTCTTTCGAGCCGCAGTTTTGTACATAAGAGCC TTTTTCTTGAGCCGTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8760:893..6159-

>mRNA_Ecto-sp13_S_contig8760.20233.1 ID=mRNA_Ecto-sp13_S_contig8760.20233.1|Name=mRNA_Ecto-sp13_S_contig8760.20233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8760:893..6159- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAGAACGGCGCTTCCTCTACGAAGAGGAGGTCTTGGTCGTGAACAT
GGACACTCAAAAGGAGGGGAATCAGAGGTCGAAGAACGGGGGGCGAAAGC
TGTACTTTGACGAACCTGATGTCGGCGAACCACGCTGGGGCGAACGAAAT
TCACTGAACGTAGAAGAAGTGCTATTGAGAGAAAGATATCGCTCGGGCGG
ATGGCTGGGGCTGCACTGCGAGTCCTCCCTCAACATGTTTCTGATGGTAC
TCTTGCTGTGGGAGGAGGTTTTCGACGAGCGAGTGCATGCGGCACTTCCG
CACGTAATCACGAGCCGGCCTTTAGACATGCAGGACAAGTTTTTCTGCAG
CCGGAGAGAAGGCCTGTCGAGACGTTTGCGGACAATTTCACGATCTTCTG
ATCGGCAGCTGTGGTTGGACGTTGGGCAGCGCTACGACAGGTTCAGGGGA
GTAGTAGCCATTTGGTGCGACTGGAACAGGTTTCCTAAACAGCAGGTGAT
GGAGATCTGCGCCGCTTTCGGCGGACGGCGACTGTCTGATCTCCTCAGTG
CGACAACCACCACCATAACACAGCTACGCTTCGGATTCCCGGACGTGGTC
CTCTGGAGGCCCAAGAGTGACAAGGGCGTTACCGAGAGCAGATCTGGTGG
TGGCAGTGGTAGCGGCGATGAGAAGGGACTCGACTGGGGCTCCAAGACAC
ACTTCGGCCTGGGGTGGGAGGGCTACGGTCAAGGGTGGGAGGTGCAGGTG
GTCGAAGTGAAGTCCAAGGACGACATCACGAGCCACGCGCAGAAGGCCTG
GCTAATGGAGCTAGAGAACGCTCGCGTGCCGGCCATGGTTACTCGGGTGC
TGACCGAGAAGGAGGCCTCGAAAATGTTGTTATAA
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