mRNA_Ecto-sp13_S_contig8744.20215.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: D8LN71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN71_ECTSI) HSP 1 Score: 450 bits (1158), Expect = 8.680e-144 Identity = 304/334 (91.02%), Postives = 305/334 (91.32%), Query Frame = 1
Query: 4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKEIAARSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---KSSGPANVPSTPMTPRELREKLRQPPSPSPTAGRADLPSASSA 996
VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRAT D SRR Q MVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKEIA RS Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KSSGPANVP TPMTPRELREKLRQP SPSP AGR DLP+ SSA
Sbjct: 118 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATSDASRRGQ--------------MVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKEIATRSLQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSSGPANVPLTPMTPRELREKLRQPSSPSPAAGRVDLPATSSA 437
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A6H5KEQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ7_9PHAE) HSP 1 Score: 455 bits (1170), Expect = 1.320e-143 Identity = 299/331 (90.33%), Postives = 300/331 (90.63%), Query Frame = 1
Query: 4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKEIAARSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSSGPANVPSTPMTPRELREKLRQPPSPSPTAGRADLPSASSA 996
VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXX MRDAKKAL EGKSPFEAYQQRAT DPS R QGGXXXXXXXX K+VVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAK IA RS Q XXXXXXXXXXXXXXXXXXXX SSGPANVPSTPMTPRELREKLRQPPSPSP AGR D SSA
Sbjct: 284 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXLDMRDAKKALAEGKSPFEAYQQRATSDPSTRGQGGXXXXXXXX---KVVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKAIATRSLQAAVAAGAKRAPTXXXXXXXXXXXXXXXXXXXXXSSGPANVPSTPMTPRELREKLRQPPSPSPMAGRVDRSPTSSA 611
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A7S4PH40_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PH40_9EUKA) HSP 1 Score: 196 bits (497), Expect = 5.420e-55 Identity = 109/257 (42.41%), Postives = 148/257 (57.59%), Query Frame = 1
Query: 1 QVTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGK-------SPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLA-SVCAK 747
QV +MQPFASQGW+E+ K+EEE GD+ RC ++L RGL FC Y+E LL+K +K +ER GN+ AR LLSRLK V ++ W+ LEGAL+EAR+GN +VARKV KYLM HVPW+GP+Y EA R EE+ E++E ++ I+ +K LV + +AY++ T GG + +ETV++A I+KEL+WKV FEAAQ+EER +C K
Sbjct: 85 QVHRMQPFASQGWLEHAKMEEECGDMERCGRVLNRGLFFCPYNENLLVKGIKHQERIGNIQAARALLSRLKRVTVDRTWKATLEGALMEARNGNGEVARKVFKYLMQHVPWHGPVYLEASRFEEREENYEKSIKII-----------------------------EKGLVGNPRYAPLWFAALKAYEKCETI-------GGI---------------QKVRETVQRAVKVITKELIWKVWFEAAQVEERSCWRICEK 290
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A7S4DG20_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG20_HETAK) HSP 1 Score: 194 bits (492), Expect = 7.910e-55 Identity = 94/135 (69.63%), Postives = 108/135 (80.00%), Query Frame = 1
Query: 4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIV 408
V ++QP+A+QGW+EY KLEEE G L CS+IL RGL FC YSE+LLIKA+K ER G L AR LL+RLK G+E VWRTVLEGALLEAR+G + VARKV KYLM VPWYGPIY+EAFRLEEK EHF SAL I+
Sbjct: 93 VCRLQPYAAQGWLEYAKLEEEGGHLETCSRILHRGLMFCHYSESLLIKAIKHFERLGQLRPARVLLARLKRAGVEKVWRTVLEGALLEARAGRSAVARKVFKYLMQQVPWYGPIYFEAFRLEEKNEHFRSALQII 227
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A2R5GDZ7_9STRA (Pre-mRNA-splicing factor CLF1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDZ7_9STRA) HSP 1 Score: 208 bits (529), Expect = 1.560e-54 Identity = 136/247 (55.06%), Postives = 162/247 (65.59%), Query Frame = 1
Query: 4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQ----RATFDPSRREQGGXXXXXXXXXXXKMVVCS--RAKETVEKAKDCISKELVWKVHFEAAQIEER 726
V + QPFA QGW+EY K+EEE G L C IL+RGL +C Y+E LL KA+K EER GNLD AR LLSRL+ +EN WRT+LEGALLEAR+GN VARKV KYLM +VPWYGPIY+EA R EEK E F+ A+AIV XXXXXXXXXXXXXXXXXX M A +A K+ A + R D +R V C + + +++A +CISKELVWKVHFEAAQ+ ER
Sbjct: 790 VNETQPFAHQGWLEYSKMEEECGRLLHCRSILQRGLEYCNYAEQLLTKAIKHEERLGNLDNARALLSRLRSQNVENAWRTILEGALLEARAGNIIVARKVFKYLMENVPWYGPIYFEATRFEEKNEEFDRAIAIVEKGLKEXXXXXXXXXXXXXXXXXXEMEQAIRAASGAKAQQVARESCQLLRKEEDRARFVLQDMFGVDDACFVVNTVPCKLLQTRGALQRAMNCISKELVWKVHFEAAQVAER 1036
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A7R9VVS4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVS4_9STRA) HSP 1 Score: 182 bits (462), Expect = 8.390e-52 Identity = 84/122 (68.85%), Postives = 103/122 (84.43%), Query Frame = 1
Query: 4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLE 369
V +QP+ASQGW+E+ KLEEE GDL +C+ +L GL++CEY+E LL KA+K EER G+L AR+LL+RLKHVGIE VWRTVLEGALLEAR+GN +AR+VLKYLM HVPWYGP+Y EA+RLE
Sbjct: 36 VCTLQPYASQGWLEFSKLEEESGDLDKCACLLNEGLSYCEYNENLLTKAIKHEERMGDLTRARQLLARLKHVGIEQVWRTVLEGALLEARAGNVAMARRVLKYLMHHVPWYGPLYLEAYRLE 157
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A7S4ITD3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ITD3_9STRA) HSP 1 Score: 198 bits (504), Expect = 3.200e-51 Identity = 128/250 (51.20%), Postives = 156/250 (62.40%), Query Frame = 1
Query: 4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLA-SVCAKE 750
V +QP+ASQGW+E+ KLEEE G+L RC+ +L GL++CEY+E LL KA+K EER GNL AR+LL+RLKHVGIE VWRTVLEGALLEAR+GN +AR+VLKYLM HVPWYGP+Y EA+RLE A+ ALAIV XXXXXXXXXXXXXXX + D L R + +++A IS+EL+WKVH EAAQ +ER A V AK+
Sbjct: 1084 VCTLQPYASQGWLEFSKLEEESGNLERCASLLSEGLSYCEYNENLLTKAIKHEERMGNLTRARQLLARLKHVGIEKVWRTVLEGALLEARAGNVGMARRVLKYLMHHVPWYGPLYLEAYRLERDADRPIEALAIVERGLSXXXXXXXXXXXXXXXCEGMDIADGALELP-----------------------------------------RTSQMLDRATKSISRELLWKVHLEAAQAQERAALMVVAKD 1292
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: W7TFT0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFT0_9STRA) HSP 1 Score: 194 bits (494), Expect = 6.170e-50 Identity = 132/247 (53.44%), Postives = 158/247 (63.97%), Query Frame = 1
Query: 4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCA 744
V ++QP A+Q W+ Y ++EEE GD+ R IL++GL FCEYSE+LL +A+K ER G+L AR LLSRL+HV I+ VWRTVLEGALLEAR+GN VARKV +YL+ VPWYGPIY EAFRLEEK + +ALAIV XXXXXXXXXXXXXXXXXXXX K A+ G P R ++ + +A ISKEL+WKVHFEAAQIEER AS A
Sbjct: 670 VCRLQPHAAQAWLVYSRMEEECGDVERADGILQKGLLFCEYSESLLARALKHAERKGDLRFARSLLSRLRHVSIDKVWRTVLEGALLEARAGNNRVARKVFEYLIGCVPWYGPIYNEAFRLEEKCQGHAAALAIVERGLKXXXXXXXXXXXXXXXXXXXXXDAGKDAVAHGLVPD---------------------------------LPRTRDMISRALGSISKELIWKVHFEAAQIEERAASTAA 883
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A7S2Y4L6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y4L6_9STRA) HSP 1 Score: 192 bits (487), Expect = 6.410e-50 Identity = 111/249 (44.58%), Postives = 141/249 (56.63%), Query Frame = 1
Query: 4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKE 750
V ++QPFASQGW+EY KLEE+ G ++R S IL GL +CEYSETLL +AVK +E+ GNL AR +L+RLKHVGI+ VWRTVLEGALLEAR+GN D+AR+VLKYLM HVPWYGP+Y EA++LE H A+ IV + Y++ D + R+ R +E+AK ISKELVWK+H EAA + ER A +E
Sbjct: 67 VCQLQPFASQGWLEYSKLEEDCGFMNRVSNILHAGLEYCEYSETLLTRAVKHQEKMGNLSSARGILARLKHVGIDKVWRTVLEGALLEARAGNHDMARRVLKYLMHHVPWYGPLYLEAYKLERDQGHPMDAMHIVERG----------------------LTTXXXXXXXXXXXXXLYEE---MDVTERQ----------------FHLPRTMHMIERAKSTISKELVWKLHLEAAHMLERTALAYVEE 274
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: D3BQ41_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BQ41_POLPP) HSP 1 Score: 191 bits (485), Expect = 7.900e-49 Identity = 102/241 (42.32%), Postives = 139/241 (57.68%), Query Frame = 1
Query: 4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEER 726
VTK QP+ SQGW+EY K+EE++G L +C QIL+ GL +C ++E LLIK ++ EE+ NL+GAR LLS+L+ I WR V+EG LLEAR+GN ++ARK+ KYLM HVPWYGPIY EA++LEE+ E +E A+AIV +K L+E DP + +R TVE+A+ +S+E+ WK++FEAAQIEER
Sbjct: 612 VTKTQPYISQGWLEYAKMEEDYGRLEKCQQILQLGLKYCPFNENLLIKGIRHEEKMDNLEGARALLSQLRDQSIFKTWRAVMEGGLLEARAGNIEIARKIFKYLMKHVPWYGPIYQEAYKLEERCEEYERAIAIV-----------------------------EKGLME--------------DPXXXXXXXSALRLYEKTSHGFLQSTR--NTVERARQAVSREVTWKIYFEAAQIEER 807 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8744.20215.1 >prot_Ecto-sp13_S_contig8744.20215.1 ID=prot_Ecto-sp13_S_contig8744.20215.1|Name=mRNA_Ecto-sp13_S_contig8744.20215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=382bp MQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEback to top mRNA from alignment at Ecto-sp13_S_contig8744:2551..6516- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8744.20215.1 ID=mRNA_Ecto-sp13_S_contig8744.20215.1|Name=mRNA_Ecto-sp13_S_contig8744.20215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3966bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8744:2551..6516- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8744:2551..6516- >mRNA_Ecto-sp13_S_contig8744.20215.1 ID=mRNA_Ecto-sp13_S_contig8744.20215.1|Name=mRNA_Ecto-sp13_S_contig8744.20215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1146bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8744:2551..6516- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |