mRNA_Ecto-sp13_S_contig8744.20214.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8744.20214.1
Unique NamemRNA_Ecto-sp13_S_contig8744.20214.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8744.20214.1 vs. uniprot
Match: D8LN71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN71_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 2.410e-74
Identity = 132/156 (84.62%), Postives = 132/156 (84.62%), Query Frame = 1
Query:    1 EVPEKSKSHVFLECARLEEFTGNLECARQILERARVETKSEWKASCCLFVLLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLKQRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR 468
            EVPEKSKSHVFLEC                  RARVETKSEWK      VLLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLKQRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR
Sbjct:  590 EVPEKSKSHVFLECXXXXXXXXXXXXXXXXXXRARVETKSEWKVFL-ESVLLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLKQRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR 744          
BLAST of mRNA_Ecto-sp13_S_contig8744.20214.1 vs. uniprot
Match: A0A6H5KEQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ7_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 6.290e-61
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1
Query:  148 VLLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLKQRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR 468
            VLLEIRANDWQRAA EAQEALKVHSGAGRLWAVLVQLKQRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR
Sbjct:  743 VLLEIRANDWQRAAAEAQEALKVHSGAGRLWAVLVQLKQRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR 849          
BLAST of mRNA_Ecto-sp13_S_contig8744.20214.1 vs. uniprot
Match: W7TFT0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFT0_9STRA)

HSP 1 Score: 188 bits (477), Expect = 2.610e-52
Identity = 96/156 (61.54%), Postives = 115/156 (73.72%), Query Frame = 1
Query:    1 EVPEKSKSHVFLECARLEEFTGNLECARQILERARVETKSEWKASCCLFVLLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLKQRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR 468
            EVP+KSK+HVFLECARLEE+ G       +L +ARVE + EWK      VLLE+RA +W RA  +A+ AL VH+G GRLWA+LVQL+       Q   L+QAL EVPKSGEVWCEGARIHL+P+S  FDLE A +YL FA+QFTPQYGDSF+E LR
Sbjct:  982 EVPDKSKAHVFLECARLEEYVGXXXXXXSVLAQARVEARGEWKVFL-ESVLLEMRAGEWVRAIDQARSALSVHTGTGRLWAILVQLRYLGGAGEQVRVLRQALSEVPKSGEVWCEGARIHLSPVSFNFDLELAQRYLDFAIQFTPQYGDSFLELLR 1136          
BLAST of mRNA_Ecto-sp13_S_contig8744.20214.1 vs. uniprot
Match: A0A6S8EA78_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8EA78_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.390e-50
Identity = 90/156 (57.69%), Postives = 117/156 (75.00%), Query Frame = 1
Query:    1 EVPEKSKSHVFLECARLEEFTGNLECARQILERARVETKSEWKASCCLFVLLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLKQRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR 468
            +VP+KS++ V LEC+R+EE+ G ++ AR+IL +AR ETK EWK      V+LE+R  +   A  EA+ AL++HSG GRLWA+LVQL        Q+   ++ALK+VPKSGEVWCEGAR+HL+PLS  FDLETA +YL FA+QFTPQYGDSF+E LR
Sbjct:  752 DVPDKSRAQVLLECSRVEEYIGKIDKAREILAKARKETKHEWKVFL-ESVMLEVRCGNRDGALKEAKSALEIHSGTGRLWAILVQLTHAHGPDQQRLVFREALKQVPKSGEVWCEGARVHLHPLSPHFDLETASRYLEFAIQFTPQYGDSFVEALR 906          
BLAST of mRNA_Ecto-sp13_S_contig8744.20214.1 vs. uniprot
Match: A0A7S0PWJ1_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWJ1_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.270e-48
Identity = 93/155 (60.00%), Postives = 111/155 (71.61%), Query Frame = 1
Query:    4 VPEKSKSHVFLECARLEEFTGNLECARQILERARVETKSEWKASCCLFVLLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLKQRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR 468
            VPEK K+ V +ECARLEEF G  E AR +L +AR E  S+WK      VLLEIR+   +RA   A+ AL++HSG GRLWA LVQL   + D AQ +SL+ AL+ VPKSGEVWCEGARIHLNP S  FDLE A  +L FA +FTPQYGDSF+E L+
Sbjct: 1030 VPEKGKAAVVMECARLEEFVGETEVARAVLRKARSEVGSDWKV-WLESVLLEIRSGKQRRAIDVAKRALEMHSGTGRLWASLVQLHHLEGDTAQCSSLRLALRVVPKSGEVWCEGARIHLNPFSSMFDLEKARSHLHFATKFTPQYGDSFLETLK 1183          
BLAST of mRNA_Ecto-sp13_S_contig8744.20214.1 vs. uniprot
Match: A0A7S4MSC1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MSC1_9STRA)

HSP 1 Score: 168 bits (426), Expect = 5.460e-47
Identity = 90/155 (58.06%), Postives = 106/155 (68.39%), Query Frame = 1
Query:    4 VPEKSKSHVFLECARLEEFTGNLECARQILERARVETKSEWKASCCLFVLLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLKQRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR 468
            VPEK ++ V LECARLEEF G++E AR IL +AR    S+WK      + LE+R     RA   AQ AL VHSG GRLWA LVQL+Q D + AQ + LK+AL  VPKSGEVWCEG R+HLNP    F LE A  +L FA +FTPQYGDSF+E LR
Sbjct:  112 VPEKGRAAVMLECARLEEFAGDIELARAILSKARFNAGSDWKV-WLESIFLEMRCGMRGRAIRLAQNALDVHSGTGRLWAALVQLRQPDGEAAQMSVLKRALWSVPKSGEVWCEGGRLHLNPFFPNFGLEEAELHLDFATKFTPQYGDSFLETLR 265          
BLAST of mRNA_Ecto-sp13_S_contig8744.20214.1 vs. uniprot
Match: A0A7S1CM51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM51_9STRA)

HSP 1 Score: 159 bits (402), Expect = 6.610e-46
Identity = 88/156 (56.41%), Postives = 107/156 (68.59%), Query Frame = 1
Query:    1 EVPEKSKSHVFLECARLEEFTGNLECARQILERARVETKSEWKASCCLFVLLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLKQRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR 468
            EVP KS++ V LE AR +E+ GNL+ AR+ L  A  +   EWK      VLLE RA     A  +A  AL+VHSG GRLWAVLVQL++ D D AQ    + AL +VPKSGEVWCEGARI L+P S+ FDL +A  +L FAVQFTPQYGDSF+E +R
Sbjct:   27 EVPPKSRAQVLLERARADEYEGNLDRARETLRVATDDAGHEWKVFL-EAVLLERRAGRRDAAIAQATRALEVHSGTGRLWAVLVQLRRADGDDAQLKVFRHALMQVPKSGEVWCEGARILLHPKSRHFDLTSARSFLDFAVQFTPQYGDSFIELVR 181          
BLAST of mRNA_Ecto-sp13_S_contig8744.20214.1 vs. uniprot
Match: A0A7S1VNZ6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VNZ6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.220e-45
Identity = 85/156 (54.49%), Postives = 115/156 (73.72%), Query Frame = 1
Query:    4 VPEKSKSHVFLECARLEEFTGNLECARQILERARVETKSEWKASCCLFVLLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLK-QRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR 468
            VPEK K    LEC+RLEEF GN++ AR IL ++R+E  S+WK      VL+E+R  +  RA   A+ AL++H+G GRLWA LVQL+   ++D+ Q A+LK+AL+ VPKSGEVWCEG R++LNP ++ FDL+ A ++L FA +FTPQYGDSF+E LR
Sbjct:  407 VPEKGKVATLLECSRLEEFIGNVDRARAILTKSRIEITSDWKV-WLESVLVEVRGGEKDRAIDLAKRALQIHTGTGRLWAALVQLRYSEETDETQYAALKKALRAVPKSGEVWCEGGRMNLNPFARCFDLDEARRHLFFATRFTPQYGDSFVESLR 561          
BLAST of mRNA_Ecto-sp13_S_contig8744.20214.1 vs. uniprot
Match: A0A7S1YIW7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YIW7_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.920e-45
Identity = 85/156 (54.49%), Postives = 115/156 (73.72%), Query Frame = 1
Query:    4 VPEKSKSHVFLECARLEEFTGNLECARQILERARVETKSEWKASCCLFVLLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLK-QRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR 468
            VPEK K    LEC+RLEEF GN++ AR IL ++R+E  S+WK      VL+E+R  +  RA   A+ AL++H+G GRLWA LVQL+   ++D+ Q A+LK+AL+ VPKSGEVWCEG R++LNP ++ FDL+ A ++L FA +FTPQYGDSF+E LR
Sbjct: 1267 VPEKGKVATLLECSRLEEFIGNVDRARAILTKSRIEITSDWKV-WLESVLVEVRGGEKDRAIDLAKRALQIHTGTGRLWAALVQLRYSEETDETQYAALKKALRAVPKSGEVWCEGGRMNLNPFARCFDLDEARRHLFFATRFTPQYGDSFVESLR 1421          
BLAST of mRNA_Ecto-sp13_S_contig8744.20214.1 vs. uniprot
Match: A0A7S4ITD3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ITD3_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.920e-45
Identity = 90/155 (58.06%), Postives = 106/155 (68.39%), Query Frame = 1
Query:    4 VPEKSKSHVFLECARLEEFTGNLECARQILERARVETKSEWKASCCLFVLLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLKQRDSDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLR 468
            VPEK ++ V LECARLEEF G++E AR IL +AR    S+WK      + LE+R     RA   AQ AL VHSG GRLWA LVQL+Q D + AQ + LK+AL  VPKSGEVWCEG R+HLNP    F LE A  +L FA +FTPQYGDSF+E LR
Sbjct: 1351 VPEKGRAAVMLECARLEEFAGDIELARAILSKARFNAGSDWKV-WLESIFLEMRCGMRGRAIRLAQNALDVHSGTGRLWAALVQLRQPDGEAAQMSVLKRALWSVPKSGEVWCEGGRLHLNPFFPNFGLEEAELHLDFATKFTPQYGDSFLETLR 1504          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8744.20214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN71_ECTSI2.410e-7484.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEQ7_9PHAE6.290e-6199.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TFT0_9STRA2.610e-5261.54Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A6S8EA78_9STRA1.390e-5057.69Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S0PWJ1_9STRA5.270e-4860.00Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A7S4MSC1_9STRA5.460e-4758.06Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1CM51_9STRA6.610e-4656.41Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1VNZ6_9STRA1.220e-4554.49Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1YIW7_9STRA1.920e-4554.49Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4ITD3_9STRA1.920e-4558.06Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8744contigEcto-sp13_S_contig8744:713..1882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score252.3
Seed ortholog evalue1.5e-64
Seed eggNOG ortholog2880.D8LN71
Model size471
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs28JG8@1,2QRVD@2759
Cds size471
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464147.0193353-CDS-Ecto-sp13_S_contig8744:712..8801681464147.0193353-CDS-Ecto-sp13_S_contig8744:712..880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8744 713..880 -
1681464147.0331557-CDS-Ecto-sp13_S_contig8744:1265..14221681464147.0331557-CDS-Ecto-sp13_S_contig8744:1265..1422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8744 1266..1422 -
1681464147.0434568-CDS-Ecto-sp13_S_contig8744:1736..18821681464147.0434568-CDS-Ecto-sp13_S_contig8744:1736..1882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8744 1737..1882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8744.20214.1prot_Ecto-sp13_S_contig8744.20214.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8744 713..1882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8744.20214.1

>prot_Ecto-sp13_S_contig8744.20214.1 ID=prot_Ecto-sp13_S_contig8744.20214.1|Name=mRNA_Ecto-sp13_S_contig8744.20214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp
EVPEKSKSHVFLECARLEEFTGNLECARQILERARVETKSEWKASCCLFV
LLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLKQRDSDQAQQASLK
QALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDS
FMECLR*
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mRNA from alignment at Ecto-sp13_S_contig8744:713..1882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8744.20214.1 ID=mRNA_Ecto-sp13_S_contig8744.20214.1|Name=mRNA_Ecto-sp13_S_contig8744.20214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1170bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8744:713..1882- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGTCCCCGAGAAGAGCAAGAGCCACGTCTTCCTCGAGTGCGCTCGGTT GGAGGAGTTCACGGGTAACCTGGAGTGCGCCCGCCAGATTCTGGAGAGAG CCAGGGTGGAGACGAAGAGCGAGTGGAAGGCAAGTTGTTGTCTTTTGTTG TTGTTGTTGTTGTTGTACCTTCTAGGTACCGCGGCGACGGGACTCGCGCC ATGCTGCTGCTGCTGCTGCTGCCGCAGAGCTACGTCGTAGTGGCGACGAA CGGGGTTCGCTGGCGTGTTTCGGCAAGCACCCGACCCCAGCGGGCGCGAT TGTGTGGTCGACCATTTCGTGATACAGCAGTGTACGGCAGGGATTTTTGT GGTGTGGTGTCGTGGACGATGATGACACTGACGATACTGCTTTGTTGTTG TTGTTGTTGGTGGTGGTGGTGGTGTTGGCGTTGTTGTTGGTGACAGGTGT TCCTCGAGAGCGTCCTGCTGGAGATCCGCGCCAACGACTGGCAGCGAGCG GCGACAGAGGCTCAGGAGGCGCTCAAGGTGCATTCCGGGGCCGGGAGGCT GTGGGCCGTCCTGGTGCAGCTCAAGCAGAGGGACAGCGACCAGGCTCAGC AGGCCTCTCTCAAGCAGGTAGGATATCAACACACAGACACGGACACGCGC ACGCACACCCACCTGTTCCAAAATTTTTATACGCGCGCGTGCACATGCGT TCCATGCTTTTTTGGTCGCCGTCGTCGTGGTCGCCGTTGCCGTTACCGTT GCTGATATTGTCTTACGGGGCCGCCGCCATTTTTGGCCCCTCGTTCCGAC GAAAGCCGGTACACACACTGTTAAATGAATCGGATTCCATCCACCCCACG CTGTTGAAGCCTCGTGGTCTCCAGGCACTTCCGCTACTTTTCCGGGGGTG GCCTTACACATGTGCTGTTTCCACCCTTGGTGCCCTCATTCACACTTGCG GTGCTCCCCCCCCCCCCCCCCCTTATTTTAACGTTAAACACGCTCTCATT AGGCGCTGAAAGAGGTGCCCAAGTCGGGCGAGGTGTGGTGCGAGGGAGCC CGGATCCACCTGAACCCGCTCTCGAAGGCCTTCGACCTGGAGACAGCCGG GAAATACCTTGGATTCGCAGTGCAGTTCACCCCCCAGTACGGGGACTCGT TCATGGAGTGCCTCAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8744:713..1882-

>mRNA_Ecto-sp13_S_contig8744.20214.1 ID=mRNA_Ecto-sp13_S_contig8744.20214.1|Name=mRNA_Ecto-sp13_S_contig8744.20214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8744:713..1882- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGTCCCCGAGAAGAGCAAGAGCCACGTCTTCCTCGAGTGCGCTCGGTT
GGAGGAGTTCACGGGTAACCTGGAGTGCGCCCGCCAGATTCTGGAGAGAG
CCAGGGTGGAGACGAAGAGCGAGTGGAAGGCAAGTTGTTGTCTTTTCGTC
CTGCTGGAGATCCGCGCCAACGACTGGCAGCGAGCGGCGACAGAGGCTCA
GGAGGCGCTCAAGGTGCATTCCGGGGCCGGGAGGCTGTGGGCCGTCCTGG
TGCAGCTCAAGCAGAGGGACAGCGACCAGGCTCAGCAGGCCTCTCTCAAG
CAGGCGCTGAAAGAGGTGCCCAAGTCGGGCGAGGTGTGGTGCGAGGGAGC
CCGGATCCACCTGAACCCGCTCTCGAAGGCCTTCGACCTGGAGACAGCCG
GGAAATACCTTGGATTCGCAGTGCAGTTCACCCCCCAGTACGGGGACTCG
TTCATGGAGTGCCTCAGGTAG
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