mRNA_Ecto-sp13_S_contig8743.20213.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8743.20213.1
Unique NamemRNA_Ecto-sp13_S_contig8743.20213.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8743.20213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8743contigEcto-sp13_S_contig8743:923..1544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size200
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464146.9740584-CDS-Ecto-sp13_S_contig8743:922..9991681464146.9740584-CDS-Ecto-sp13_S_contig8743:922..999Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8743 923..999 -
1681464146.9838161-CDS-Ecto-sp13_S_contig8743:1422..14831681464146.9838161-CDS-Ecto-sp13_S_contig8743:1422..1483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8743 1423..1483 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464146.9933052-UTR-Ecto-sp13_S_contig8743:1483..15441681464146.9933052-UTR-Ecto-sp13_S_contig8743:1483..1544Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8743 1484..1544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8743.20213.1prot_Ecto-sp13_S_contig8743.20213.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8743 923..1483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8743.20213.1

>prot_Ecto-sp13_S_contig8743.20213.1 ID=prot_Ecto-sp13_S_contig8743.20213.1|Name=mRNA_Ecto-sp13_S_contig8743.20213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
MRWHGTRWDGTNRESRWGERGKPEPKEILSAEVPGYIAVAVFRPDV
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mRNA from alignment at Ecto-sp13_S_contig8743:923..1544-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8743.20213.1 ID=mRNA_Ecto-sp13_S_contig8743.20213.1|Name=mRNA_Ecto-sp13_S_contig8743.20213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=622bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8743:923..1544- (Ectocarpus species13 EcNAP12_S_4_19m)
ATATTGACCGCGGGATGAGAATGGGACGGGAACATGAAAGGAAGTGGAGC
AGATTCGTGGGATGAGATGGCATGGAACTAGATGGGATGGGACTAACCGA
GAATCTCGATGGGGGGAACGAGGTGAGATATGGTCAGGTAAGCAGAAAAC
GGGAGAAAGGAGGCGTATTCATGCAGGAACTTGCTGCAAATTCCCTAAGA
AAATTTTGAGATTCTGAAGACGTGACGTTCATCCTTTGACGGCGCCACGT
TTCACTGGGTACCATTAGTCCCTTCTTCAGCACACGAAGCATAACAAGGG
CTCGATATGAACATGTCTGCGTGAAACAGTCACGAAAGATCAGAAACTCT
CGGGGATAGAGTGATCTTCAAATTTCAAATGTTACAAATTGGTTTCAGTC
CCGACTCTTCCACGGTTGCATTGGAAGACACGCTACCTTTGTCATGTGAC
TAGTTATGTGTTCTTTTGTGATTGAATCTTGTTTGGCACCTCTCTAAAAC
GCGTATTGTTTTCCCCATTTTTGGGTGCTTTCCGTGATCGCTCAGGCAAA
CCTGAACCAAAAGAGATTCTGTCTGCTGAAGTCCCCGGATATATAGCGGT
CGCGGTGTTCCGGCCGGACGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8743:923..1544-

>mRNA_Ecto-sp13_S_contig8743.20213.1 ID=mRNA_Ecto-sp13_S_contig8743.20213.1|Name=mRNA_Ecto-sp13_S_contig8743.20213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8743:923..1544- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGATGGCATGGAACTAGATGGGATGGGACTAACCGAGAATCTCGATG
GGGGGAACGAGGCAAACCTGAACCAAAAGAGATTCTGTCTGCTGAAGTCC
CCGGATATATAGCGGTCGCGGTGTTCCGGCCGGACGTC
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