mRNA_Ecto-sp13_S_contig8740.20209.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8740.20209.1
Unique NamemRNA_Ecto-sp13_S_contig8740.20209.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8740.20209.1 vs. uniprot
Match: D8LKD9_ECTSI (MABP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD9_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 3.200e-98
Identity = 162/181 (89.50%), Postives = 166/181 (91.71%), Query Frame = 1 
Query:    1 VEIAEEAREAFRRSRMTETGPHGPLLATTPGIMAIPTWDTYTPMVVKGGGREASPWARTPDMDRAGGSRASFDFESSSSRAGSPRAPSSNGDDAGTDLDHPLPAPSPLGREDVHDFVTELVQEVIGSKRAHVSAFVTLAALCKMATGILRTLSDGELVARDLGNKVRGSDPFVKSQRIFLP 543
            VEIAEEAREAFRRSRMT TGPHGPLLATTPGIMAIPTWDTYTPMVVKGGGREA+PWARTPDMDRAGGSRASFDFESS SRAGSPRAPSSNGDD G  LDHPLPAPSPLGREDVHDFVTELVQEVIGSKRAHVSAFVTLAALCKMATGILRTLSDGELVARDLGNK    D F   ++ + P
Sbjct:  761 VEIAEEAREAFRRSRMTGTGPHGPLLATTPGIMAIPTWDTYTPMVVKGGGREAAPWARTPDMDRAGGSRASFDFESSPSRAGSPRAPSSNGDDGGMVLDHPLPAPSPLGREDVHDFVTELVQEVIGSKRAHVSAFVTLAALCKMATGILRTLSDGELVARDLGNKKSTFDNFKADEKSWHP 941
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BLAST of mRNA_Ecto-sp13_S_contig8740.20209.1 vs. uniprot
Match: A0A6H5KWN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN7_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.000e-32
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 3 
Query:    3 GDRRGGQGGVPAIQNDGDGASRSLVGYDSRDNGHPDVGHVHAYGRQGGREGGIPVGADSGHGPRWR 200
            GD RGGQGGVPAIQ+DGDGASRS VG+DSRDNGHPDVGHVHAYGRQGGREGGIPVGAD GHGPRWR
Sbjct:  135 GDCRGGQGGVPAIQSDGDGASRSPVGHDSRDNGHPDVGHVHAYGRQGGREGGIPVGADPGHGPRWR 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8740.20209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKD9_ECTSI3.200e-9889.50MABP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KWN7_9PHAE3.000e-3292.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8740contigEcto-sp13_S_contig8740:2159..5183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size561
Hectar predicted targeting categoryother localisation
Exons3
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464146.7880483-CDS-Ecto-sp13_S_contig8740:2158..23571681464146.7880483-CDS-Ecto-sp13_S_contig8740:2158..2357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8740 2159..2357 +
1681464146.7988822-CDS-Ecto-sp13_S_contig8740:3234..34151681464146.7988822-CDS-Ecto-sp13_S_contig8740:3234..3415Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8740 3235..3415 +
1681464146.809333-CDS-Ecto-sp13_S_contig8740:5002..51831681464146.809333-CDS-Ecto-sp13_S_contig8740:5002..5183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8740 5003..5183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8740.20209.1prot_Ecto-sp13_S_contig8740.20209.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8740 2159..5183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8740.20209.1

>prot_Ecto-sp13_S_contig8740.20209.1 ID=prot_Ecto-sp13_S_contig8740.20209.1|Name=mRNA_Ecto-sp13_S_contig8740.20209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp
VEIAEEAREAFRRSRMTETGPHGPLLATTPGIMAIPTWDTYTPMVVKGGG
REASPWARTPDMDRAGGSRASFDFESSSSRAGSPRAPSSNGDDAGTDLDH
PLPAPSPLGREDVHDFVTELVQEVIGSKRAHVSAFVTLAALCKMATGILR
TLSDGELVARDLGNKVRGSDPFVKSQRIFLPWEVVQ*
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mRNA from alignment at Ecto-sp13_S_contig8740:2159..5183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8740.20209.1 ID=mRNA_Ecto-sp13_S_contig8740.20209.1|Name=mRNA_Ecto-sp13_S_contig8740.20209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3025bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8740:2159..5183+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGAGATCGCCGAGGAGGCCAGGGAGGCGTTCCGGCGATCCAGAATGAC
GGAGACGGGGCCTCACGGTCCCTTGTTGGCTACGACTCCAGGGATAATGG
CCATCCCGACGTGGGACACGTACACGCCTATGGTCGTCAAGGGGGGAGGG
AGGGAGGCATCCCCGTGGGCGCGGACTCCGGACATGGACCGCGCTGGCGG
TGAGTGCTGCTGCTTTTGGTTTCGGCTGTTGTTGGCTGTTGTTGTTGTGT
TGTCCGCATCAGTTGGATCAGCACGGATATTTGAAGGTACTAAGCGGAGA
CCGGAATCGTTTTTGTGTGAAATATGACAACAATTGCTACCTCGGTTGTT
GTTGTATTTTTGTCCGCGTCTTTCGGACCAGCACAGCCAGCGCTCGCACT
TGAGCAGTTACTTTGGAGTAAAGAACTTGAGAACTGTAAAGTGAAGAAAT
TGAGCATTCAAAATATCAAAGGAATTGAGCACCACTTGCGAGCGCTGTTA
AGAACCCCTACACTACGTACAACCTATGTAGCGACCATTAGCACGGCATG
ACCCTGGGAACCAAGAACCTCAACCTCGGTCAAGAGTAGAGGTTCGGAAG
AGTGCGGGCGCTGAACAGTACGGATATTTGAAGCCCTTGAGTGGAGACCG
GAATATTTTTTTGATGTGAAGGGCAACAACACTATGAAACGAGGACTGTT
TTTGCTTCCGCGGTTGGGTACCGTTTCCTCCTCCCGATCGTCTGTCTCGT
CATGCTTACAGTGGTGCACTACACACCTTTTTTTTGTCCAATTTTTTTGG
CATGGTCCAGAGCCAGCTTCGACTTGTCGACGCTTCGCCATCCCAGGCTG
GTCTCTCTCGTCATGGTTACACTAGCACACCACTTTTTTTGTCCTGAAAA
AACCCTTTTTTGCTTGTCTATTATAAAGAAAGCTCTTTATCGTCACAAGA
AATGGCAGGGTCGAGAACCAGCGTCGATTTCGACTCTTCGCCATCCCAGA
CCGACAGTTGTCTGTCTCATCATGGTGATAATAGTGCACTAGAAACACCT
TTTTTTATTCCCGTTTTGTTTGGCAGGGTCGAGAGCCAGCTTCGACTTCG
AGTCTTCGTCGTCCCGGGCCGGAAGCCCGCGAGCGCCGAGCAGCAACGGG
GATGACGCGGGGACGGATTTGGACCATCCCCTCCCTGCGCCTTCGCCCTT
GGGCAGAGAAGATGTGCATGACTTCGTGACGGAGTTGGTACAGGAGGTCA
TCGGGAGGTGAGACATTGGTTTTAGGTTTTATGTAACGGCGGGATGTTGT
CTTGGACTTCACTACCTTTATGGATGTGGTCGTGCTTTCATGAGTTTGTA
CATTTGTGTCTTCTTTATCGTTTTTTTTTCTGGTTCGCCTGCAATTATTT
TCTCTTTCTGTGGTGGGTTTGATGAAAAATATACTCTCTTTTGTGCACCG
TTTTTTTTTTTTTCATGACGTCACGTGCCCACCAGAGTCATGTTTCGTGG
TCGTACCTGTCTTTGCGTTTTGAGGCACAGCAGCGGAGTTCTTTGCCCCC
AACTTTTTATCAAATCCCCTATCTCTTGGCCTCCTTTCGTTTGATGGAAA
CCCTTGTCACCATTTTTCTAATTTGCATATTTTCTATTGCGCTCTTCCTT
GTGTAGATATGTTGTACGACCAATTTTCTAGTTTCTAGTTTGTGTTCCAC
CACGTCTTTTTCCTTTTTCTTCGTGTACCATAGTTGTGACACAATTCTTC
TAATTATTCTAACAATGATTAATTTAGAAAATTTGTGCTTGTTTTTCCCG
TAAATTTTCATCACGTGGGACAGCTCGGTGGACATGGTCGAGCTCGCGAA
GATCATGGAGATGGTGCTGGACGTGGTGAAGAGACATAGCTCCCACTCGA
GCGAGATTTTCTGGCGGGACGTGGGGGACCTTGGGGCGATGCTGTTCGGA
GAAAGGCGAGGAAAATAATACTGTTGCGAGTTTTGGTCTATGTCTACTCC
GTATACGATGTAGGTTACGTAAGACAATGGTTTTCACTGATTTCCAACGG
TGCTGTTGTAATTTGAATTTCGTGAACATGTGAACAGAGGGAATCGTGCT
GGACACACCTCGGTATATTGTGTTTGATTAAGGCGATCTCCACACACCCC
CTTCCTGTTCGATCGGCTGTACATTGGGAAAAAATTTTTGAGCAACCTCA
TGGTAAATTAGGAAGGAACGATTGACCATCGGTAATCGGTCCTGTGGGAA
CAATGCTCCGTCCCCTCGAGCGGGCGCGTGGTCAATGGTCTAACCGCTAA
GGCATGATAAGAGCACCCCCCCTGTTCGGGTTACAGTATTACCGGAACCC
GATTAAATTGATTTCGGTTAGGTAGGAAAAGAGAACAAGAGCAGAACTCC
GCCAGGACCTACCCTTGTTTTGGTTGGTCAATGTGGGAAACCATTTGTTT
TCCATGCAGCCGTAGTCCCGGTTTATGTAGCGGTTACCTGTTTGCCGGGA
TGCCCTGAATAGCGGTTCCGGAATCCCGTGGCACCGCTGCACGTCGGTAC
TCAAACTACTAATACCTACTGCGGATCCGGTTAGCGGCGATGGCCTCAGC
GGTTATTATATTCCATCTCACACTCTTTCACATTTCTAGCGATGTATACG
GCTCTCGACGGTGTTCGCGAGTCGTCGGGATTCTGACGAGAAAGTGTCTA
CTGAGGTAAGAGGGAATCTACAAGAGTGGGCTGTGGTTGATCGGTACGCC
GGGACCACGACTCTGAGCACAGATGTTTCCTTTTCTTTTCTAATGCTCCT
CTCCCTTCGTTTCCTTGTTTGTTTTTGTTTTTTTTGCTGTTCAGCAAACG
AGCGCACGTAAGCGCGTTCGTGACTCTAGCAGCCCTGTGCAAGATGGCTA
CGGGGATTCTCAGGACGCTGTCGGACGGCGAGTTGGTGGCGAGAGATCTT
GGCAACAAGGTCCGTGGCAGTGATCCCTTTGTTAAATCGCAGCGTATATT
TTTGCCATGGGAAGTCGTACAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8740:2159..5183+

>mRNA_Ecto-sp13_S_contig8740.20209.1 ID=mRNA_Ecto-sp13_S_contig8740.20209.1|Name=mRNA_Ecto-sp13_S_contig8740.20209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8740:2159..5183+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGAGATCGCCGAGGAGGCCAGGGAGGCGTTCCGGCGATCCAGAATGAC
GGAGACGGGGCCTCACGGTCCCTTGTTGGCTACGACTCCAGGGATAATGG
CCATCCCGACGTGGGACACGTACACGCCTATGGTCGTCAAGGGGGGAGGG
AGGGAGGCATCCCCGTGGGCGCGGACTCCGGACATGGACCGCGCTGGCGG
GTCGAGAGCCAGCTTCGACTTCGAGTCTTCGTCGTCCCGGGCCGGAAGCC
CGCGAGCGCCGAGCAGCAACGGGGATGACGCGGGGACGGATTTGGACCAT
CCCCTCCCTGCGCCTTCGCCCTTGGGCAGAGAAGATGTGCATGACTTCGT
GACGGAGTTGGTACAGGAGGTCATCGGGAGCAAACGAGCGCACGTAAGCG
CGTTCGTGACTCTAGCAGCCCTGTGCAAGATGGCTACGGGGATTCTCAGG
ACGCTGTCGGACGGCGAGTTGGTGGCGAGAGATCTTGGCAACAAGGTCCG
TGGCAGTGATCCCTTTGTTAAATCGCAGCGTATATTTTTGCCATGGGAAG
TCGTACAATGA
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