mRNA_Ecto-sp13_S_contig8740.20208.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8740.20208.1
Unique NamemRNA_Ecto-sp13_S_contig8740.20208.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8740.20208.1 vs. uniprot
Match: A0A6H5KWN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN7_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 2.440e-66
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:    1 GAGLGGVRGGSGGRTVLDFAIEVMCDSLDHVAEDRFPIALEFFEALVRTSEGRLGPLALQRTFRGLSFLCAYTCSSRRWVQASGGTKGPLEDDNRAFSALKDLLRLVCGQA 333
            GAGLGGV G S GRT+LDFAIEV+CDSLDHVAEDRFPIALEFFEALVR SEGRLGPLALQRTFRGLSFLCAYTCSSRRWVQASGGTKGPLEDDNRAFSALK LLRLVCGQA
Sbjct:   23 GAGLGGVTGASCGRTLLDFAIEVICDSLDHVAEDRFPIALEFFEALVRISEGRLGPLALQRTFRGLSFLCAYTCSSRRWVQASGGTKGPLEDDNRAFSALKYLLRLVCGQA 133
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BLAST of mRNA_Ecto-sp13_S_contig8740.20208.1 vs. uniprot
Match: D8LKD9_ECTSI (MABP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD9_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 5.440e-62
Identity = 105/110 (95.45%), Postives = 106/110 (96.36%), Query Frame = 1 
Query:    1 GAGLGGVRGGSGGRTVLDFAIEVMCDSLDHVAEDRFPIALEFFEALVRTSEGRLGPLALQRTFRGLSFLCAYTCSSRRWVQASGGTKGPLEDDNRAFSALKDLLRLVCGQ 330
            GAGLGGV G SGGRT+LDFAIEVMCDSLDHV EDRFPIALEFFEALVRTSEGRLGPLALQRTFRGLSFLCAYTCSSRRWVQASGGTKGPLEDDN AFSALKDLLRLVCGQ
Sbjct:  651 GAGLGGVTGASGGRTLLDFAIEVMCDSLDHVTEDRFPIALEFFEALVRTSEGRLGPLALQRTFRGLSFLCAYTCSSRRWVQASGGTKGPLEDDNPAFSALKDLLRLVCGQ 760
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8740.20208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWN7_9PHAE2.440e-6693.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKD9_ECTSI5.440e-6295.45MABP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8740contigEcto-sp13_S_contig8740:1..1824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size334
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_001120.1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464146.7389338-CDS-Ecto-sp13_S_contig8740:0..661681464146.7389338-CDS-Ecto-sp13_S_contig8740:0..66Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8740 1..66 +
1681464146.7489893-CDS-Ecto-sp13_S_contig8740:1208..13331681464146.7489893-CDS-Ecto-sp13_S_contig8740:1208..1333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8740 1209..1333 +
1681464146.7582333-CDS-Ecto-sp13_S_contig8740:1681..18231681464146.7582333-CDS-Ecto-sp13_S_contig8740:1681..1823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8740 1682..1823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8740.20208.1prot_Ecto-sp13_S_contig8740.20208.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8740 1..1823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8740.20208.1

>prot_Ecto-sp13_S_contig8740.20208.1 ID=prot_Ecto-sp13_S_contig8740.20208.1|Name=mRNA_Ecto-sp13_S_contig8740.20208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
GAGLGGVRGGSGGRTVLDFAIEVMCDSLDHVAEDRFPIALEFFEALVRTS
EGRLGPLALQRTFRGLSFLCAYTCSSRRWVQASGGTKGPLEDDNRAFSAL
KDLLRLVCGQA
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mRNA from alignment at Ecto-sp13_S_contig8740:1..1824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8740.20208.1 ID=mRNA_Ecto-sp13_S_contig8740.20208.1|Name=mRNA_Ecto-sp13_S_contig8740.20208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1824bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8740:1..1824+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCCGGACTGGGGGGGGTTAGGGGGGGGAGCGGCGGGAGGACTGTGTT
GGACTTCGCTATCGAGGTGTGTGTGTGTCCTGTGACACTGGTGCTGCCTT
TCTACGGATCTTTCTTTTTTTTTCGCGGGGATGGCCGGTGCGAGCTGTGC
GCGGGCGCTCTTGAAGCTCGCCATCGAGTGGTTGTGTGTGTGTCCCGTGT
GTGCCCGGTGTGCTTGTGATACTTTTGCTCCCTTTCTGCCATTTTTCGAA
AGAGAGAACCAATCTTCTTCGACAGACGTTGGGAGATTGTGGTAGTATCC
TTTGTGAGGGTGATCTCCACAAGTTTTTGTTTTCTCTAGATGTACCGTGT
TTTTTTGTGATTGTTGTTTTTGCGCGGTAACTAACGCTGTTGGAGTTCGT
CATCGAGGTGTGCGTGTGTTTTGTGACACTGCTGCTGCCTTCCTGCCATT
TTTTGCGAAAGGGGGAACCTATCGTGCTCGAGAGACGTTGAAAGATTATT
GTAGTACCCTTTTTGAAGGTGATCTCCACAAATTGCTGTTTTCGTTGTAC
CGTGTTTTTCTTCTTACTGTTTTTTTGCACGGTGACCGACTGTTGGATTT
TGACATCGAGGTGAGTGCTGTGCCGCCTTGTTTTGTTTCCTCTCTGCGTG
CATGTGTTTTTCGGTTATCGAAGGGGCGCGTTTTTAGTTTGTAATTTTCA
TTTGTTGTTTTTTCGGGGAGGGCATGTTTTGTAGGAACACTCGTCTGTCG
CACGTAAATGGGATGATTCGTGCTGTCCAGCCTGTACTATTATAACTGTT
GTCATCCCACTTGCCCTCGGCTTCGGTCTTTTCGCCGGTGCCTATGAAGG
CTTTGTATGATTGCCAACCAGCTCTGGACTGGCCCTGCCGCCTGTTCATC
TTGCATGACCCTTCGATGACACTGCTGTGCTATCATGAGAGAGAACCCAC
TCCGGAGCGATGACTTGCATGCATGCATGCATTGCCTACGTGGGGAAAAG
AGCGAACCTCTCTGTTTTGACGCTAGTAGTAAACTTTATTTCTGTTCCAT
CTCTTAAGTTTGCCATAGGAGGAAGAATAATACTCTGCTTTCTTGACACT
TGTAAACGATATTCATCTCTAAATTAAACATAGGAGGATGAATAATCCTC
TCTTCCTTGACACTTGCAAACGTACATAACACGTTGGAAAAAAAATTGCG
TTGACCAGGTGATGTGCGACTCGCTCGACCACGTGGCGGAGGACCGATTT
CCGATCGCGCTCGAGTTTTTCGAAGCCCTTGTGAGAACATCAGAGGGGAG
ACTCGGCCCTCTTGCCCTTCAGCGAACCTTCAGGTGATTGGTCCGGGGGG
GGGGGGGGGGGGATCCAAACTATGTCTGGGGGAGTGTACTCTTGTTAACG
TATGCCGTAGTCGTTAAACCGTTGACCTCGCATCCCTACAAAGCCCAGAC
GGAGTGCGCCTGGGTTTCGCCGGACCAGGCTACACCAATAAGCGCGAAAC
AAGCCGGTGTTGTTGCTGCTTTGGTTTGAATTTTTTTTTTTGCCCCCTTG
TTTCTTGCCTTGTTTGGCAGTCACTGGCGGGTGGAGGTTCTTGAGTTTAT
TTTTTTGATTGAAATCCTTCGGGAATGTTACACACTTGATTTTATCTTTC
GTATTTATTTTTTTTCTGCCTCGACTCGCAGGGGACTATCGTTCCTGTGC
GCGTACACGTGCTCCTCGCGGCGGTGGGTGCAGGCAAGCGGCGGAACGAA
GGGGCCGCTAGAGGACGACAATCGTGCATTTTCGGCTCTCAAAGACCTGC
TCAGGCTTGTTTGCGGACAGGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8740:1..1824+

>mRNA_Ecto-sp13_S_contig8740.20208.1 ID=mRNA_Ecto-sp13_S_contig8740.20208.1|Name=mRNA_Ecto-sp13_S_contig8740.20208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8740:1..1824+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCCGGACTGGGGGGGGTTAGGGGGGGGAGCGGCGGGAGGACTGTGTT
GGACTTCGCTATCGAGGTGATGTGCGACTCGCTCGACCACGTGGCGGAGG
ACCGATTTCCGATCGCGCTCGAGTTTTTCGAAGCCCTTGTGAGAACATCA
GAGGGGAGACTCGGCCCTCTTGCCCTTCAGCGAACCTTCAGGGGACTATC
GTTCCTGTGCGCGTACACGTGCTCCTCGCGGCGGTGGGTGCAGGCAAGCG
GCGGAACGAAGGGGCCGCTAGAGGACGACAATCGTGCATTTTCGGCTCTC
AAAGACCTGCTCAGGCTTGTTTGCGGACAGGCG
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