mRNA_Ecto-sp13_S_contig874.20207.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig874.20207.1
Unique NamemRNA_Ecto-sp13_S_contig874.20207.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig874.20207.1 vs. uniprot
Match: A0A6H5L1P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1P7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 7.040e-20
Identity = 68/89 (76.40%), Postives = 69/89 (77.53%), Query Frame = 3 
Query:   27 MQALAGPATPPVPAFASSPFGGVGQPGVGGLAGGGPFFSPILQLPQQQHXXXXXXXXXXQGSARAQPLPAVTTAMAPPFPFLQAAAVFP 293
            MQALA  ATPPVPAFASSP GGVGQPGVGGLAGGGPF SP+L LPQQ  XXXXXXXXXX           VTTAMAP FPFLQ AAVFP
Sbjct:  710 MQALADSATPPVPAFASSPSGGVGQPGVGGLAGGGPFLSPVLHLPQQXXXXXXXXXXXXXXXXXXXXX--VTTAMAPAFPFLQVAAVFP 796
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig874.20207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1P7_9PHAE7.040e-2076.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig874contigEcto-sp13_S_contig874:12326..14173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size598
Hectar predicted targeting categoryother localisation
Exons3
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464146.5352037-UTR-Ecto-sp13_S_contig874:12325..125041681464146.5352037-UTR-Ecto-sp13_S_contig874:12325..12504Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig874 12326..12504 -
1681464146.5451984-UTR-Ecto-sp13_S_contig874:13660..136661681464146.5451984-UTR-Ecto-sp13_S_contig874:13660..13666Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig874 13661..13666 -
1681464146.573023-UTR-Ecto-sp13_S_contig874:14150..141731681464146.573023-UTR-Ecto-sp13_S_contig874:14150..14173Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig874 14151..14173 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464146.5545642-CDS-Ecto-sp13_S_contig874:13666..137741681464146.5545642-CDS-Ecto-sp13_S_contig874:13666..13774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig874 13667..13774 -
1681464146.5636673-CDS-Ecto-sp13_S_contig874:13868..141501681464146.5636673-CDS-Ecto-sp13_S_contig874:13868..14150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig874 13869..14150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig874.20207.1prot_Ecto-sp13_S_contig874.20207.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig874 13667..14150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig874.20207.1

>prot_Ecto-sp13_S_contig874.20207.1 ID=prot_Ecto-sp13_S_contig874.20207.1|Name=mRNA_Ecto-sp13_S_contig874.20207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
MMQALAGPATPPVPAFASSPFGGVGQPGVGGLAGGGPFFSPILQLPQQQH
QQHQQQQQEEQGSARAQPLPAVTTAMAPPFPFLQAAAVFPPPADWRPSRQ
EGGRTPCCRRCRLLSSAISTRRRASARRT*
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mRNA from alignment at Ecto-sp13_S_contig874:12326..14173-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig874.20207.1 ID=mRNA_Ecto-sp13_S_contig874.20207.1|Name=mRNA_Ecto-sp13_S_contig874.20207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1848bp|location=Sequence derived from alignment at Ecto-sp13_S_contig874:12326..14173- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCGCCGCCGCAGACGCCGCCAATGATGCAGGCGCTCGCCGGCCCTGCT
ACCCCGCCCGTTCCTGCCTTCGCCTCGAGCCCTTTCGGCGGCGTTGGGCA
GCCGGGCGTCGGGGGGCTGGCCGGAGGAGGGCCGTTTTTTTCGCCTATCT
TGCAGCTTCCTCAGCAGCAGCATCAGCAGCATCAGCAGCAGCAGCAAGAA
GAGCAGGGGTCTGCTAGAGCGCAACCGCTGCCGGCGGTGACCACGGCGAT
GGCGCCCCCCTTCCCGTTCTTGCAAGCCGCCGCGGTCTTCCCCCCTCCGG
CTGACGCGCCGCCGCCGTCGCCGGCGTTGCCAGCCCCACCGGCGGAAGCA
GCAGCAGCAGCGGCGGCAAAGGCGACGGCGACGGCGACGGCGGCGGCAGT
GGAGGCCGTCGCGCCAGGAAGGGGGTCGGACACCTTGCTGTCGCCGGTGC
CGTCTCCTGAGTTCAGCAATCTCGACCCGGCGCCGAGCATCGGCTCGGCG
GACGTAGTTGCGGGTGAGTGTGGACTGAGAGAGAGAGGGTGCGTGTCGTA
CGGTACTTGTGTGTTTGTTTACGGCATGAAGTTAAGGGCCACCTCGCACG
TGCTCTCGCCCGTTTTGGCCAGGCGTTTTGTTGTTTTGCGGTGGTTGTTT
GGGGTTGATGACGGTAGGGCGTTCGGCATGTGGGGACGTTGATAAGATGG
CGATGCTGCTGCAACGGGAACGAGCCACCCGAAGTAGCTTGGTTGCTGTG
GGAGGGCTTCAGCTGGCGCCCGCTCCCCTCCATTATCGCGAATGTGGGCG
TTGGACACAGGTTGCGCGAGGGCATGCTTTTGGTGTGCCTCTGTAGCTTT
AGCTCAGTAGTCGTGTCTGCTCGAGAAACGATAAAGTTTAAAAAGTTCCA
TCCCACCGGGAAAATATCACAAGTCCCTTTGCCCCCCCCCCCCTCCTGCC
CCTACCCCCCCCTCCCCCCCCATCGGGGTTGGGTTTTCGTCGCTTGACAA
CGACGTTGTACAACGAGCCGCCCCCTCCCCGCGTTTGCGATCGGGGTTGG
GTTTTTGTCACTTGACAGCGACGTTGTGAAATATGCCGATCACTACGTGA
GCTCGACAACTAGGTTACCGCTTTTTTTTTTGCGGTAACCATAATGGTGG
TCGAGTAGATTATGTTGTGCGGGGTGAGAACCCTCACGCCGCGCAAAGGG
GACAATCGCACCACGTTGGGTTAAATTGGTCAAGCACCCTGGAGGTAGTA
AGTGCTTACAACTGCCCATGGAAGTGAAAGCATCAGAGAATGAATTAAGC
CATACGCAGCTGTCATCCGTACGCAAAAAAGTAAGCACAAGATGCCGAAC
ACCCTTAGCAGGACGCAGCTCACCCTTCATGCGGCTCGCCGAACCTCACG
GCGCTTCGCGCTTCGTGATGTGAGAGCCTGGTCCAGTGAGAACCCGGCGT
GCTCCGTCCCGGCTTAGTAGGGATGCGAGGTCAATGATCTGCCGACTACG
GCATGCACGACTGGGAGTACACGCCCCTGCCCCCTCTCTTCCTCTCTCAC
CTTTCTCTCTCTCGCCCTGTTTCTTTCTTTCTCTCTCTCTCTCGCTCGCT
CTGCCTCTTGTTTCTCCTTCTTGGCTCTTCTCCCTTGTTCCTTATCGAAC
GAACGCGGAACGAGCGAAGACGCAAAGGAGACGGCCGCCGCCTGGGACGT
GCTCCCCAAGCATGACAACGGCAACCACCTCGGCTTGCCAGAACGAGCGC
CCAACAACGCGGGCCAGCCTCTCCCGCCGACGGGAACGCCAACGCCCCCG
CCGGTCCCGGCGGCGGTGCCGGCGGCTAACGGCACGGAGACGACCGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig874:12326..14173-

>mRNA_Ecto-sp13_S_contig874.20207.1 ID=mRNA_Ecto-sp13_S_contig874.20207.1|Name=mRNA_Ecto-sp13_S_contig874.20207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig874:12326..14173- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCAGGCGCTCGCCGGCCCTGCTACCCCGCCCGTTCCTGCCTTCGC
CTCGAGCCCTTTCGGCGGCGTTGGGCAGCCGGGCGTCGGGGGGCTGGCCG
GAGGAGGGCCGTTTTTTTCGCCTATCTTGCAGCTTCCTCAGCAGCAGCAT
CAGCAGCATCAGCAGCAGCAGCAAGAAGAGCAGGGGTCTGCTAGAGCGCA
ACCGCTGCCGGCGGTGACCACGGCGATGGCGCCCCCCTTCCCGTTCTTGC
AAGCCGCCGCGGTCTTCCCCCCTCCGGCTGACTGGAGGCCGTCGCGCCAG
GAAGGGGGTCGGACACCTTGCTGTCGCCGGTGCCGTCTCCTGAGTTCAGC
AATCTCGACCCGGCGCCGAGCATCGGCTCGGCGGACGTAG
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