mRNA_Ecto-sp13_S_contig8728.20194.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8728.20194.1
Unique NamemRNA_Ecto-sp13_S_contig8728.20194.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8728.20194.1 vs. uniprot
Match: D7FLA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLA2_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 3.260e-30
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 MPVSLSATQQPQQGNIFTHISKIFSSFTHRPSLWTNVAAKERSVPAYNNTIASLRR 168
            MPVS SA+QQ QQGNIFTHISKIFSSFTHRPSLWTNVAAKERSVPAYNNTIASLRR
Sbjct:    1 MPVSSSASQQQQQGNIFTHISKIFSSFTHRPSLWTNVAAKERSVPAYNNTIASLRR 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8728.20194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLA2_ECTSI3.260e-3094.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8728contigEcto-sp13_S_contig8728:1506..4845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_004880.1
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464145.5226347-CDS-Ecto-sp13_S_contig8728:1505..15511681464145.5226347-CDS-Ecto-sp13_S_contig8728:1505..1551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8728 1506..1551 -
1681464145.5344906-CDS-Ecto-sp13_S_contig8728:4720..48451681464145.5344906-CDS-Ecto-sp13_S_contig8728:4720..4845Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8728 4721..4845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8728.20194.1prot_Ecto-sp13_S_contig8728.20194.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8728 1506..4845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8728.20194.1

>prot_Ecto-sp13_S_contig8728.20194.1 ID=prot_Ecto-sp13_S_contig8728.20194.1|Name=mRNA_Ecto-sp13_S_contig8728.20194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
MPVSLSATQQPQQGNIFTHISKIFSSFTHRPSLWTNVAAKERSVPAYNNT
IASLRR*
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mRNA from alignment at Ecto-sp13_S_contig8728:1506..4845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8728.20194.1 ID=mRNA_Ecto-sp13_S_contig8728.20194.1|Name=mRNA_Ecto-sp13_S_contig8728.20194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3340bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8728:1506..4845- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGTTTCCTTGAGCGCAACCCAGCAGCCGCAGCAGGGCAACATCTT
CACGCACATCAGCAAGATCTTCAGCAGCTTCACCCACCGCCCCTCCCTGT
GGACAAACGTCGCTGCCAAAGAGAGGTGACTCATGAGCAAGTCGGTCGCC
ATGCCCCCCCCCCCCTCCCGCCCCTATCTTTGCCACTAGGGACCACTGCC
ACGCCTGCGTGCATCTCTCGGAGCCAGCCATACCCCGAGGTTTAATTGGA
GAGCACGATTTCTCTCCTGCGACCGTCAAAGATGCGCGTGCGTTTCAACA
TGATGAACGTTGTGCGTACAGATGTGCAGGAGTCTACAGATCTTGTGGGA
GACTCTCCAACCTCGCCAACTCTCAGCCTCGCTGCCTCCTGTCGCGCAAA
AAACTAGTAAGAGTAGCAGGGTCGACCGTTGAGATGAGCATCTTTGTAGT
GGGGTAGCAGCGGCAGCTAAGAACGAGGCGCGTGTGTGGTGCACAGAAAG
CGTGCTTTTAGGTTGAAGCTACTTGCCAGGTTTGCGGCGGGACCAGTATC
GTTCAAACCGGGCAACCGTGGCCGTGCGAGGGCCGATTGCTGGTGATCCA
GATCGCCCGCGACCTTTTCTGTACTCGTGCCAGTTTACACAGCTGCCATT
CTTTATTTCATACTAGTAGTCGCTCCATGCACCGCGGCATGGCGGCGCCG
GTCCCTGTTGACGGTGTTGATTTCGGGCGTGTGTGTTTGCAACTGCTTGA
CTGCGTGCGTCATGGTTGCTGGGTGGACAACAAGTGGACAACCACGCAAA
TACGCAAATACGCAAATACCCCCACCCGCTTTCGCAGTCTCCCCTCAGCG
CCGGAAGAGGCAGACTCGTGAGCACGACGCGTGCCTATGAGCTTGGTGGC
TCAGTGCATACTCGCGCTGCAAGTGCAGCAGCAACGTTGCACCAGCAGTG
TAGACTAATTAGCACAGAACGTGTGTTATTTTGGCTGGTTGTTGTCTACA
TTTGAAGTTGCAACGCACTCGTCCCGCTTTGAATCTGTACGGCCACCGGC
CTCTAGCTAACCCTCACCCTCCCCGCCCAGCCCCGCGCGCAGAATCTGAA
TTCCTCGTACAGCAGTGTACGTATTCTACACACATGCGGCCAGAAAACAC
AGCATTAGTGTAGTTATGTAGTTGCGTGTTCCATGTACGTAGATGGGGGT
GCTCTTGCGGCGTTCCCGAAAACAAACGTGTGTCGCGGCCTTTTTTCGGC
ATTTTCCACCGCAACCACCCGAGAGGCACTTTCAGTTCAGCACGCAATTG
TACTGCACATAAAAAATAATATAGCGCAACGAATGTTGTCGTTTGCGGGC
GCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGTTGTTGGCTCTCAGATGCCACACGTGCATTTTG
ATATTTTTTTCAATCCGTATGACAGTGTCGTCCCCTCATTGGTGGACGTC
CGTTATTTCAACGTTCGGACTATTCTACACTATTTCAATATTTCCCTTTC
CTGGACGCCGCATCACCCGGGGTACCGTAAATCGCGGAGAGATAGCATGG
GGTGGGATCGTCGTTGATGTGTTTTTTCGTCGGGTCTCTTGTCGGGGCTT
ACCCCTGTGTCATCGCTCCGACCCCGGTGCGGAAATGCAACTTAATCATT
TCGTTTTGCATGGCACCCCGTTGCGATCTCTCTGACCGATCCGATCACCG
GTGAATATATGCACAGCTATTGTACAACGTGTGCACGCACCCCGATCTCT
TCTCAGACTGACACCGGTACCAAACTGTTGGTACCACCACTGTACCGGTC
TTTGCAATGCACACGCATATCGGAGCCGCAAAAAGGCAGCGAAATATAGG
GCAAACAAATCTAGTGTGTCGGGTGTTGTGATGCGAGGTTGGCTATGACG
TGACAAGGACAACAAATGATGTGGTTTCCATCTGGGGTACCAACGTATAC
GGTGTCAGGTCTCCCGCTTTTGTTTCGGTCCATTTACTGCTGTACAGATA
CAAATACTTCCGCAGCAGTGCGATACCTTCGTTGCGTAAGGTGGGTTAGA
TTTGGGGAAGCTAGATCATGTTCGGCTTGCCATGATGTGTGCTTCGTTGA
GTGTACGGTTGGCAAACGTCCGTACCAAATAAAGAATGAAGATAACATCC
CGCGTGAACCGTGACCATGATCACGTGCATCGAGGAGTGGCACTCCGCTG
ACACGGTCCGTCTCCACATGTTAAAGGCACGCACATGTATGATGCCTCGT
TCCATCAGCTGAAAAGGAGCTCAATCTTGGATTTTGGTGTCGGGAGAGAT
TGGAGAGATGGCACCCGATGCGATCTAACCGACCGCGGTGCGGAAATCGA
ATTAAAAAATCATACCGTTGCATTTTTTTTTGCGCACCCCCGTGCCATCT
CTCCGACAAATACGTCACCACTGTGAACACGGTAACACGGAGAGGACCAA
GGCCACACGTTTTTTTCTTGGCCTTCCTCTGTGTACTGTCAACGAAGTTT
GTTGGTTGTCGTTTCTTAGATTTTTGGCTAGAAACATTCGACCGCTCCTA
GGCCAACGGCGTGGTTGCATGTCGGGGCCGCGCCTCTCCTCTCCATTCAT
CCGTCGTTTAGCACCATTTACCCATTGTTTTCGACTTACGGTAATTTTTG
TGGCCCCTCAACCTTCCTCGCCCTCCTCTGATTCACCATCACAGGTCTGT
TCCTGCCTACAACAACACCATCGCCAGCCTGCGCCGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8728:1506..4845-

>mRNA_Ecto-sp13_S_contig8728.20194.1 ID=mRNA_Ecto-sp13_S_contig8728.20194.1|Name=mRNA_Ecto-sp13_S_contig8728.20194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8728:1506..4845- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGTTTCCTTGAGCGCAACCCAGCAGCCGCAGCAGGGCAACATCTT
CACGCACATCAGCAAGATCTTCAGCAGCTTCACCCACCGCCCCTCCCTGT
GGACAAACGTCGCTGCCAAAGAGAGGTCTGTTCCTGCCTACAACAACACC
ATCGCCAGCCTGCGCCGCTAG
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